data_3NM9 # _entry.id 3NM9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NM9 pdb_00003nm9 10.2210/pdb3nm9/pdb NDB NA0647 ? ? RCSB RCSB060004 ? ? WWPDB D_1000060004 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1qrv _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NM9 _pdbx_database_status.recvd_initial_deposition_date 2010-06-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Churchill, M.E.A.' 1 'Klass, J.' 2 'Zoetewey, D.L.' 3 # _citation.id primary _citation.title 'Structural analysis of HMGD-DNA complexes reveals influence of intercalation on sequence selectivity and DNA bending.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 403 _citation.page_first 88 _citation.page_last 102 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20800069 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.08.031 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Churchill, M.E.' 1 ? primary 'Klass, J.' 2 ? primary 'Zoetewey, D.L.' 3 ? # _cell.entry_id 3NM9 _cell.length_a 44.750 _cell.length_b 71.700 _cell.length_c 89.020 _cell.angle_alpha 92.49 _cell.angle_beta 91.12 _cell.angle_gamma 107.10 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NM9 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'High mobility group protein D' 8310.396 6 ? M13A ? ? 2 polymer syn ;DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' ; 3374.210 10 ? ? ? ? 3 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HMG-D # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG A,D,G,J,M,P ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DG)(DA)(DT)(DA)(DT)(DC)(DG)(DC)' GGCGATATCGC B,C,E,F,H,I,K,L,N,O ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 LYS n 1 4 PRO n 1 5 LYS n 1 6 ARG n 1 7 PRO n 1 8 LEU n 1 9 SER n 1 10 ALA n 1 11 TYR n 1 12 ALA n 1 13 LEU n 1 14 TRP n 1 15 LEU n 1 16 ASN n 1 17 SER n 1 18 ALA n 1 19 ARG n 1 20 GLU n 1 21 SER n 1 22 ILE n 1 23 LYS n 1 24 ARG n 1 25 GLU n 1 26 ASN n 1 27 PRO n 1 28 GLY n 1 29 ILE n 1 30 LYS n 1 31 VAL n 1 32 THR n 1 33 GLU n 1 34 VAL n 1 35 ALA n 1 36 LYS n 1 37 ARG n 1 38 GLY n 1 39 GLY n 1 40 GLU n 1 41 LEU n 1 42 TRP n 1 43 ARG n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 ASP n 1 48 LYS n 1 49 SER n 1 50 GLU n 1 51 TRP n 1 52 GLU n 1 53 ALA n 1 54 LYS n 1 55 ALA n 1 56 ALA n 1 57 LYS n 1 58 ALA n 1 59 LYS n 1 60 ASP n 1 61 ASP n 1 62 TYR n 1 63 ASP n 1 64 ARG n 1 65 ALA n 1 66 VAL n 1 67 LYS n 1 68 GLU n 1 69 PHE n 1 70 GLU n 1 71 ALA n 1 72 ASN n 1 73 GLY n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DC n 2 10 DG n 2 11 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CG17950, HmgD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET13a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-D74-M13A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HMGD_DROME Q05783 1 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG 2 ? 2 PDB 3NM9 3NM9 2 GGCGATATCGC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NM9 A 1 ? 73 ? Q05783 2 ? 74 ? 2 74 2 1 3NM9 D 1 ? 73 ? Q05783 2 ? 74 ? 2 74 3 1 3NM9 G 1 ? 73 ? Q05783 2 ? 74 ? 2 74 4 1 3NM9 J 1 ? 73 ? Q05783 2 ? 74 ? 2 74 5 1 3NM9 M 1 ? 73 ? Q05783 2 ? 74 ? 2 74 6 1 3NM9 P 1 ? 73 ? Q05783 2 ? 74 ? 2 74 7 2 3NM9 B 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 8 2 3NM9 C 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 9 2 3NM9 E 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 10 2 3NM9 F 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 11 2 3NM9 H 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 12 2 3NM9 I 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 13 2 3NM9 K 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 14 2 3NM9 L 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 15 2 3NM9 N 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 16 2 3NM9 O 1 ? 11 ? 3NM9 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NM9 ALA A 12 ? UNP Q05783 MET 13 'engineered mutation' 13 1 2 3NM9 ALA D 12 ? UNP Q05783 MET 13 'engineered mutation' 13 2 3 3NM9 ALA G 12 ? UNP Q05783 MET 13 'engineered mutation' 13 3 4 3NM9 ALA J 12 ? UNP Q05783 MET 13 'engineered mutation' 13 4 5 3NM9 ALA M 12 ? UNP Q05783 MET 13 'engineered mutation' 13 5 6 3NM9 ALA P 12 ? UNP Q05783 MET 13 'engineered mutation' 13 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NM9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.26 _exptl_crystal.density_percent_sol 62.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.25 _exptl_crystal_grow.pdbx_details ;1.2 mM HMGDM13A protein, 1.18 mM duplex DNA fragment (GCGATATCGC), 5 mM MES-Na pH 5.25, 10 mM NaCl, and 7.6% PEG 3350 equilibrated against 0.5 mL 32% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 297K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2001-01-01 _diffrn_detector.details 'Blue Optics' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3NM9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 23992 _reflns.number_all ? _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.060 _reflns.pdbx_netI_over_sigmaI 21.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.91 _reflns_shell.percent_possible_all 82.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.208 _reflns_shell.meanI_over_sigI_obs 4.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NM9 _refine.ls_number_reflns_obs 21700 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 93.06 _refine.ls_R_factor_obs .24763 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work .24499 _refine.ls_R_factor_R_free .29556 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1179 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .907 _refine.correlation_coeff_Fo_to_Fc_free .855 _refine.B_iso_mean 58.037 _refine.aniso_B[1][1] -4.41 _refine.aniso_B[2][2] .40 _refine.aniso_B[3][3] 3.22 _refine.aniso_B[1][2] -.60 _refine.aniso_B[1][3] -1.28 _refine.aniso_B[2][3] -4.37 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1qrv _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free .444 _refine.overall_SU_ML .251 _refine.overall_SU_B 12.834 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3510 _refine_hist.pdbx_number_atoms_nucleic_acid 2042 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 5556 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .009 .022 ? 5861 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.334 2.402 ? 8297 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.973 5.000 ? 432 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.763 23.571 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 23.877 15.000 ? 696 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.277 15.000 ? 36 'X-RAY DIFFRACTION' ? r_chiral_restr .070 .200 ? 868 'X-RAY DIFFRACTION' ? r_gen_planes_refined .004 .020 ? 3748 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .209 .250 ? 2129 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .298 .250 ? 3569 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .186 .250 ? 230 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .167 .250 ? 80 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .346 .250 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.681 2.000 ? 2241 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.821 2.500 ? 3450 'X-RAY DIFFRACTION' ? r_scbond_it 3.078 3.500 ? 4847 'X-RAY DIFFRACTION' ? r_scangle_it 4.279 4.500 ? 4847 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.850 _refine_ls_shell.d_res_low 2.923 _refine_ls_shell.number_reflns_R_work 1429 _refine_ls_shell.R_factor_R_work .422 _refine_ls_shell.percent_reflns_obs 84.89 _refine_ls_shell.R_factor_R_free .449 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NM9 _struct.title 'HMGD(M13A)-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NM9 _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'High mobility group, DNA bending, non-sequence-specific, HMG domain, chromosomal protein, DNA, GENE REGULATION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? ASN A 26 ? SER A 10 ASN A 27 1 ? 18 HELX_P HELX_P2 2 LYS A 30 ? MET A 45 ? LYS A 31 MET A 46 1 ? 16 HELX_P HELX_P3 3 LYS A 48 ? ASN A 72 ? LYS A 49 ASN A 73 1 ? 25 HELX_P HELX_P4 4 SER B 9 ? ASN B 26 ? SER D 10 ASN D 27 1 ? 18 HELX_P HELX_P5 5 LYS B 30 ? MET B 45 ? LYS D 31 MET D 46 1 ? 16 HELX_P HELX_P6 6 LYS B 48 ? ASN B 72 ? LYS D 49 ASN D 73 1 ? 25 HELX_P HELX_P7 7 SER C 9 ? SER C 17 ? SER G 10 SER G 18 1 ? 9 HELX_P HELX_P8 8 ALA C 18 ? ASN C 26 ? ALA G 19 ASN G 27 1 ? 9 HELX_P HELX_P9 9 LYS C 30 ? ALA C 44 ? LYS G 31 ALA G 45 1 ? 15 HELX_P HELX_P10 10 LYS C 48 ? GLU C 70 ? LYS G 49 GLU G 71 1 ? 23 HELX_P HELX_P11 11 SER D 9 ? ASN D 16 ? SER J 10 ASN J 17 1 ? 8 HELX_P HELX_P12 12 ALA D 18 ? ASN D 26 ? ALA J 19 ASN J 27 1 ? 9 HELX_P HELX_P13 13 LYS D 30 ? ARG D 43 ? LYS J 31 ARG J 44 1 ? 14 HELX_P HELX_P14 14 LYS D 48 ? GLU D 70 ? LYS J 49 GLU J 71 1 ? 23 HELX_P HELX_P15 15 SER E 9 ? ASN E 16 ? SER M 10 ASN M 17 1 ? 8 HELX_P HELX_P16 16 ALA E 18 ? ASN E 26 ? ALA M 19 ASN M 27 1 ? 9 HELX_P HELX_P17 17 THR E 32 ? MET E 45 ? THR M 33 MET M 46 1 ? 14 HELX_P HELX_P18 18 LYS E 48 ? ASN E 72 ? LYS M 49 ASN M 73 1 ? 25 HELX_P HELX_P19 19 SER F 9 ? GLU F 25 ? SER P 10 GLU P 26 1 ? 17 HELX_P HELX_P20 20 LYS F 30 ? ALA F 44 ? LYS P 31 ALA P 45 1 ? 15 HELX_P HELX_P21 21 LYS F 48 ? ASN F 72 ? LYS P 49 ASN P 73 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? G DG 2 N1 ? ? ? 1_555 H DC 11 N3 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? G DG 4 N1 ? ? ? 1_555 H DC 9 N3 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? G DG 4 N2 ? ? ? 1_555 H DC 9 O2 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? G DG 4 O6 ? ? ? 1_555 H DC 9 N4 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? G DA 5 N1 ? ? ? 1_555 H DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? G DA 5 N6 ? ? ? 1_555 H DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? G DT 6 O4 ? ? ? 1_555 H DA 7 N6 ? ? B DT 6 C DA 7 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog8 hydrog ? ? G DT 8 N3 ? ? ? 1_555 H DA 5 N1 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog9 hydrog ? ? G DC 9 N3 ? ? ? 1_555 H DG 4 N1 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? G DC 9 N4 ? ? ? 1_555 H DG 4 O6 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? G DC 9 O2 ? ? ? 1_555 H DG 4 N2 ? ? B DC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? G DG 10 N2 ? ? ? 1_555 H DC 3 N3 ? ? B DG 10 C DC 3 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? G DC 11 N3 ? ? ? 1_555 H DG 2 N1 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? G DC 11 N4 ? ? ? 1_555 H DG 2 O6 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? G DC 11 O2 ? ? ? 1_555 H DG 2 N2 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? I DG 2 N1 ? ? ? 1_555 J DC 11 N3 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? I DG 2 N2 ? ? ? 1_555 J DC 11 O2 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? I DG 2 O6 ? ? ? 1_555 J DC 11 N4 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? I DC 3 N3 ? ? ? 1_555 J DG 10 N1 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? I DC 3 N4 ? ? ? 1_555 J DG 10 O6 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? I DC 3 O2 ? ? ? 1_555 J DG 10 N2 ? ? E DC 3 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? I DG 4 N1 ? ? ? 1_555 J DC 9 N3 ? ? E DG 4 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? I DG 4 N2 ? ? ? 1_555 J DC 9 O2 ? ? E DG 4 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? I DG 4 O6 ? ? ? 1_555 J DC 9 N4 ? ? E DG 4 F DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? I DA 5 N1 ? ? ? 1_555 J DT 8 N3 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? I DA 5 N6 ? ? ? 1_555 J DT 8 O4 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? I DT 6 N3 ? ? ? 1_555 J DA 7 N1 ? ? E DT 6 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? I DT 6 O4 ? ? ? 1_555 J DA 7 N6 ? ? E DT 6 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? I DA 7 N1 ? ? ? 1_555 J DT 6 N3 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? I DA 7 N6 ? ? ? 1_555 J DT 6 O4 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? I DT 8 N3 ? ? ? 1_555 J DA 5 N1 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? I DT 8 O4 ? ? ? 1_555 J DA 5 N6 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? I DC 9 N3 ? ? ? 1_555 J DG 4 N1 ? ? E DC 9 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? I DC 9 N4 ? ? ? 1_555 J DG 4 O6 ? ? E DC 9 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? I DC 9 O2 ? ? ? 1_555 J DG 4 N2 ? ? E DC 9 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? I DG 10 N1 ? ? ? 1_555 J DC 3 N3 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? I DG 10 N2 ? ? ? 1_555 J DC 3 O2 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? I DG 10 O6 ? ? ? 1_555 J DC 3 N4 ? ? E DG 10 F DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? I DC 11 N3 ? ? ? 1_555 J DG 2 N1 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? I DC 11 N4 ? ? ? 1_555 J DG 2 O6 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? I DC 11 O2 ? ? ? 1_555 J DG 2 N2 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? J DG 2 O6 ? ? ? 1_555 M DC 11 N4 ? ? F DG 2 K DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog43 hydrog ? ? K DG 2 N1 ? ? ? 1_555 L DC 11 N3 ? ? H DG 2 I DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? K DG 2 N2 ? ? ? 1_555 L DC 11 O2 ? ? H DG 2 I DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? K DG 2 O6 ? ? ? 1_555 L DC 11 N4 ? ? H DG 2 I DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? K DC 3 N3 ? ? ? 1_555 L DG 10 N1 ? ? H DC 3 I DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? K DC 3 N4 ? ? ? 1_555 L DG 10 O6 ? ? H DC 3 I DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? K DC 3 O2 ? ? ? 1_555 L DG 10 N2 ? ? H DC 3 I DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? K DG 4 N1 ? ? ? 1_555 L DC 9 N3 ? ? H DG 4 I DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? K DG 4 N2 ? ? ? 1_555 L DC 9 O2 ? ? H DG 4 I DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? K DG 4 O6 ? ? ? 1_555 L DC 9 N4 ? ? H DG 4 I DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? K DA 5 N1 ? ? ? 1_555 L DT 8 N3 ? ? H DA 5 I DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? K DA 5 N6 ? ? ? 1_555 L DT 8 O4 ? ? H DA 5 I DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? K DT 6 N3 ? ? ? 1_555 L DA 7 N1 ? ? H DT 6 I DA 7 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog55 hydrog ? ? K DA 7 N1 ? ? ? 1_555 L DT 6 N3 ? ? H DA 7 I DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? K DA 7 N6 ? ? ? 1_555 L DT 6 O4 ? ? H DA 7 I DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? K DT 8 N3 ? ? ? 1_555 L DA 5 N1 ? ? H DT 8 I DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? K DT 8 O4 ? ? ? 1_555 L DA 5 N6 ? ? H DT 8 I DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? K DC 9 N3 ? ? ? 1_555 L DG 4 N1 ? ? H DC 9 I DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? K DC 9 N4 ? ? ? 1_555 L DG 4 O6 ? ? H DC 9 I DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? K DC 9 O2 ? ? ? 1_555 L DG 4 N2 ? ? H DC 9 I DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? K DG 10 N1 ? ? ? 1_555 L DC 3 N3 ? ? H DG 10 I DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? K DG 10 N2 ? ? ? 1_555 L DC 3 O2 ? ? H DG 10 I DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? K DG 10 O6 ? ? ? 1_555 L DC 3 N4 ? ? H DG 10 I DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? K DC 11 N3 ? ? ? 1_555 L DG 2 N1 ? ? H DC 11 I DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? K DC 11 N4 ? ? ? 1_555 L DG 2 O6 ? ? H DC 11 I DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? K DC 11 O2 ? ? ? 1_555 L DG 2 N2 ? ? H DC 11 I DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? M DG 2 N2 ? ? ? 1_555 N DC 11 N3 ? ? K DG 2 L DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog69 hydrog ? ? M DC 3 O2 ? ? ? 1_555 N DG 10 N2 ? ? K DC 3 L DG 10 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog70 hydrog ? ? M DG 4 N1 ? ? ? 1_555 N DC 9 N3 ? ? K DG 4 L DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? M DG 4 N2 ? ? ? 1_555 N DC 9 O2 ? ? K DG 4 L DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? M DG 4 O6 ? ? ? 1_555 N DC 9 N4 ? ? K DG 4 L DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? M DT 6 N3 ? ? ? 1_555 N DA 7 N1 ? ? K DT 6 L DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? M DT 6 O4 ? ? ? 1_555 N DA 7 N6 ? ? K DT 6 L DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? M DA 7 N6 ? ? ? 1_555 N DA 5 N1 ? ? K DA 7 L DA 5 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog76 hydrog ? ? M DA 7 N1 ? ? ? 1_555 N DT 6 N3 ? ? K DA 7 L DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? M DA 7 N6 ? ? ? 1_555 N DT 6 O4 ? ? K DA 7 L DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? M DC 9 O2 ? ? ? 1_555 N DG 4 N2 ? ? K DC 9 L DG 4 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog79 hydrog ? ? M DG 10 O6 ? ? ? 1_555 N DG 2 N1 ? ? K DG 10 L DG 2 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog80 hydrog ? ? M DG 10 N2 ? ? ? 1_555 N DC 3 O2 ? ? K DG 10 L DC 3 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog81 hydrog ? ? O DG 2 N1 ? ? ? 1_555 P DC 11 N3 ? ? N DG 2 O DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? O DG 2 N2 ? ? ? 1_555 P DC 11 O2 ? ? N DG 2 O DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? O DG 2 O6 ? ? ? 1_555 P DC 11 N4 ? ? N DG 2 O DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? O DC 3 N3 ? ? ? 1_555 P DG 10 N1 ? ? N DC 3 O DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? O DC 3 N4 ? ? ? 1_555 P DG 10 O6 ? ? N DC 3 O DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? O DC 3 O2 ? ? ? 1_555 P DG 10 N2 ? ? N DC 3 O DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? O DG 4 N1 ? ? ? 1_555 P DC 9 N3 ? ? N DG 4 O DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? O DG 4 N2 ? ? ? 1_555 P DC 9 O2 ? ? N DG 4 O DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? O DG 4 O6 ? ? ? 1_555 P DC 9 N4 ? ? N DG 4 O DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? O DA 5 N1 ? ? ? 1_555 P DT 8 N3 ? ? N DA 5 O DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? O DA 5 N6 ? ? ? 1_555 P DT 8 O4 ? ? N DA 5 O DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? O DT 6 N3 ? ? ? 1_555 P DA 7 N1 ? ? N DT 6 O DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? O DT 6 O4 ? ? ? 1_555 P DA 7 N6 ? ? N DT 6 O DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? O DA 7 N1 ? ? ? 1_555 P DT 6 N3 ? ? N DA 7 O DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? O DA 7 N6 ? ? ? 1_555 P DT 6 O4 ? ? N DA 7 O DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? O DT 8 N3 ? ? ? 1_555 P DA 5 N1 ? ? N DT 8 O DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? O DT 8 O4 ? ? ? 1_555 P DA 5 N6 ? ? N DT 8 O DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? O DC 9 N3 ? ? ? 1_555 P DG 4 N1 ? ? N DC 9 O DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? O DC 9 N4 ? ? ? 1_555 P DG 4 O6 ? ? N DC 9 O DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? O DC 9 O2 ? ? ? 1_555 P DG 4 N2 ? ? N DC 9 O DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? O DG 10 N1 ? ? ? 1_555 P DC 3 N3 ? ? N DG 10 O DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? O DG 10 N2 ? ? ? 1_555 P DC 3 O2 ? ? N DG 10 O DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? O DG 10 O6 ? ? ? 1_555 P DC 3 N4 ? ? N DG 10 O DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? O DC 11 O2 ? ? ? 1_555 P DG 2 N2 ? ? N DC 11 O DG 2 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3NM9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NM9 _atom_sites.fract_transf_matrix[1][1] 0.022346 _atom_sites.fract_transf_matrix[1][2] 0.006875 _atom_sites.fract_transf_matrix[1][3] 0.000792 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0.000752 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 ASP 2 3 3 ASP ASP A . n A 1 3 LYS 3 4 4 LYS LYS A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 LYS 5 6 6 LYS LYS A . n A 1 6 ARG 6 7 7 ARG ARG A . n A 1 7 PRO 7 8 8 PRO PRO A . n A 1 8 LEU 8 9 9 LEU LEU A . n A 1 9 SER 9 10 10 SER SER A . n A 1 10 ALA 10 11 11 ALA ALA A . n A 1 11 TYR 11 12 12 TYR TYR A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 TRP 14 15 15 TRP TRP A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 ASN 16 17 17 ASN ASN A . n A 1 17 SER 17 18 18 SER SER A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 ARG 19 20 20 ARG ARG A . n A 1 20 GLU 20 21 21 GLU GLU A . n A 1 21 SER 21 22 22 SER SER A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 LYS 23 24 24 LYS LYS A . n A 1 24 ARG 24 25 25 ARG ARG A . n A 1 25 GLU 25 26 26 GLU GLU A . n A 1 26 ASN 26 27 27 ASN ASN A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 LYS 30 31 31 LYS LYS A . n A 1 31 VAL 31 32 32 VAL VAL A . n A 1 32 THR 32 33 33 THR THR A . n A 1 33 GLU 33 34 34 GLU GLU A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 ALA 35 36 36 ALA ALA A . n A 1 36 LYS 36 37 37 LYS LYS A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 GLY 38 39 39 GLY GLY A . n A 1 39 GLY 39 40 40 GLY GLY A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 LEU 41 42 42 LEU LEU A . n A 1 42 TRP 42 43 43 TRP TRP A . n A 1 43 ARG 43 44 44 ARG ARG A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 MET 45 46 46 MET MET A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 LYS 48 49 49 LYS LYS A . n A 1 49 SER 49 50 50 SER SER A . n A 1 50 GLU 50 51 51 GLU GLU A . n A 1 51 TRP 51 52 52 TRP TRP A . n A 1 52 GLU 52 53 53 GLU GLU A . n A 1 53 ALA 53 54 54 ALA ALA A . n A 1 54 LYS 54 55 55 LYS LYS A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 ALA 56 57 57 ALA ALA A . n A 1 57 LYS 57 58 58 LYS LYS A . n A 1 58 ALA 58 59 59 ALA ALA A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 ASP 60 61 61 ASP ASP A . n A 1 61 ASP 61 62 62 ASP ASP A . n A 1 62 TYR 62 63 63 TYR TYR A . n A 1 63 ASP 63 64 64 ASP ASP A . n A 1 64 ARG 64 65 65 ARG ARG A . n A 1 65 ALA 65 66 66 ALA ALA A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 LYS 67 68 68 LYS LYS A . n A 1 68 GLU 68 69 69 GLU GLU A . n A 1 69 PHE 69 70 70 PHE PHE A . n A 1 70 GLU 70 71 71 GLU GLU A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 ASN 72 73 73 ASN ASN A . n A 1 73 GLY 73 74 74 GLY GLY A . n B 1 1 SER 1 2 2 SER SER D . n B 1 2 ASP 2 3 3 ASP ASP D . n B 1 3 LYS 3 4 4 LYS LYS D . n B 1 4 PRO 4 5 5 PRO PRO D . n B 1 5 LYS 5 6 6 LYS LYS D . n B 1 6 ARG 6 7 7 ARG ARG D . n B 1 7 PRO 7 8 8 PRO PRO D . n B 1 8 LEU 8 9 9 LEU LEU D . n B 1 9 SER 9 10 10 SER SER D . n B 1 10 ALA 10 11 11 ALA ALA D . n B 1 11 TYR 11 12 12 TYR TYR D . n B 1 12 ALA 12 13 13 ALA ALA D . n B 1 13 LEU 13 14 14 LEU LEU D . n B 1 14 TRP 14 15 15 TRP TRP D . n B 1 15 LEU 15 16 16 LEU LEU D . n B 1 16 ASN 16 17 17 ASN ASN D . n B 1 17 SER 17 18 18 SER SER D . n B 1 18 ALA 18 19 19 ALA ALA D . n B 1 19 ARG 19 20 20 ARG ARG D . n B 1 20 GLU 20 21 21 GLU GLU D . n B 1 21 SER 21 22 22 SER SER D . n B 1 22 ILE 22 23 23 ILE ILE D . n B 1 23 LYS 23 24 24 LYS LYS D . n B 1 24 ARG 24 25 25 ARG ARG D . n B 1 25 GLU 25 26 26 GLU GLU D . n B 1 26 ASN 26 27 27 ASN ASN D . n B 1 27 PRO 27 28 28 PRO PRO D . n B 1 28 GLY 28 29 29 GLY GLY D . n B 1 29 ILE 29 30 30 ILE ILE D . n B 1 30 LYS 30 31 31 LYS LYS D . n B 1 31 VAL 31 32 32 VAL VAL D . n B 1 32 THR 32 33 33 THR THR D . n B 1 33 GLU 33 34 34 GLU GLU D . n B 1 34 VAL 34 35 35 VAL VAL D . n B 1 35 ALA 35 36 36 ALA ALA D . n B 1 36 LYS 36 37 37 LYS LYS D . n B 1 37 ARG 37 38 38 ARG ARG D . n B 1 38 GLY 38 39 39 GLY GLY D . n B 1 39 GLY 39 40 40 GLY GLY D . n B 1 40 GLU 40 41 41 GLU GLU D . n B 1 41 LEU 41 42 42 LEU LEU D . n B 1 42 TRP 42 43 43 TRP TRP D . n B 1 43 ARG 43 44 44 ARG ARG D . n B 1 44 ALA 44 45 45 ALA ALA D . n B 1 45 MET 45 46 46 MET MET D . n B 1 46 LYS 46 47 47 LYS LYS D . n B 1 47 ASP 47 48 48 ASP ASP D . n B 1 48 LYS 48 49 49 LYS LYS D . n B 1 49 SER 49 50 50 SER SER D . n B 1 50 GLU 50 51 51 GLU GLU D . n B 1 51 TRP 51 52 52 TRP TRP D . n B 1 52 GLU 52 53 53 GLU GLU D . n B 1 53 ALA 53 54 54 ALA ALA D . n B 1 54 LYS 54 55 55 LYS LYS D . n B 1 55 ALA 55 56 56 ALA ALA D . n B 1 56 ALA 56 57 57 ALA ALA D . n B 1 57 LYS 57 58 58 LYS LYS D . n B 1 58 ALA 58 59 59 ALA ALA D . n B 1 59 LYS 59 60 60 LYS LYS D . n B 1 60 ASP 60 61 61 ASP ASP D . n B 1 61 ASP 61 62 62 ASP ASP D . n B 1 62 TYR 62 63 63 TYR TYR D . n B 1 63 ASP 63 64 64 ASP ASP D . n B 1 64 ARG 64 65 65 ARG ARG D . n B 1 65 ALA 65 66 66 ALA ALA D . n B 1 66 VAL 66 67 67 VAL VAL D . n B 1 67 LYS 67 68 68 LYS LYS D . n B 1 68 GLU 68 69 69 GLU GLU D . n B 1 69 PHE 69 70 70 PHE PHE D . n B 1 70 GLU 70 71 71 GLU GLU D . n B 1 71 ALA 71 72 72 ALA ALA D . n B 1 72 ASN 72 73 73 ASN ASN D . n B 1 73 GLY 73 74 74 GLY GLY D . n C 1 1 SER 1 2 2 SER SER G . n C 1 2 ASP 2 3 3 ASP ASP G . n C 1 3 LYS 3 4 4 LYS LYS G . n C 1 4 PRO 4 5 5 PRO PRO G . n C 1 5 LYS 5 6 6 LYS LYS G . n C 1 6 ARG 6 7 7 ARG ARG G . n C 1 7 PRO 7 8 8 PRO PRO G . n C 1 8 LEU 8 9 9 LEU LEU G . n C 1 9 SER 9 10 10 SER SER G . n C 1 10 ALA 10 11 11 ALA ALA G . n C 1 11 TYR 11 12 12 TYR TYR G . n C 1 12 ALA 12 13 13 ALA ALA G . n C 1 13 LEU 13 14 14 LEU LEU G . n C 1 14 TRP 14 15 15 TRP TRP G . n C 1 15 LEU 15 16 16 LEU LEU G . n C 1 16 ASN 16 17 17 ASN ASN G . n C 1 17 SER 17 18 18 SER SER G . n C 1 18 ALA 18 19 19 ALA ALA G . n C 1 19 ARG 19 20 20 ARG ARG G . n C 1 20 GLU 20 21 21 GLU GLU G . n C 1 21 SER 21 22 22 SER SER G . n C 1 22 ILE 22 23 23 ILE ILE G . n C 1 23 LYS 23 24 24 LYS LYS G . n C 1 24 ARG 24 25 25 ARG ARG G . n C 1 25 GLU 25 26 26 GLU GLU G . n C 1 26 ASN 26 27 27 ASN ASN G . n C 1 27 PRO 27 28 28 PRO PRO G . n C 1 28 GLY 28 29 29 GLY GLY G . n C 1 29 ILE 29 30 30 ILE ILE G . n C 1 30 LYS 30 31 31 LYS LYS G . n C 1 31 VAL 31 32 32 VAL VAL G . n C 1 32 THR 32 33 33 THR THR G . n C 1 33 GLU 33 34 34 GLU GLU G . n C 1 34 VAL 34 35 35 VAL VAL G . n C 1 35 ALA 35 36 36 ALA ALA G . n C 1 36 LYS 36 37 37 LYS LYS G . n C 1 37 ARG 37 38 38 ARG ARG G . n C 1 38 GLY 38 39 39 GLY GLY G . n C 1 39 GLY 39 40 40 GLY GLY G . n C 1 40 GLU 40 41 41 GLU GLU G . n C 1 41 LEU 41 42 42 LEU LEU G . n C 1 42 TRP 42 43 43 TRP TRP G . n C 1 43 ARG 43 44 44 ARG ARG G . n C 1 44 ALA 44 45 45 ALA ALA G . n C 1 45 MET 45 46 46 MET MET G . n C 1 46 LYS 46 47 47 LYS LYS G . n C 1 47 ASP 47 48 48 ASP ASP G . n C 1 48 LYS 48 49 49 LYS LYS G . n C 1 49 SER 49 50 50 SER SER G . n C 1 50 GLU 50 51 51 GLU GLU G . n C 1 51 TRP 51 52 52 TRP TRP G . n C 1 52 GLU 52 53 53 GLU GLU G . n C 1 53 ALA 53 54 54 ALA ALA G . n C 1 54 LYS 54 55 55 LYS LYS G . n C 1 55 ALA 55 56 56 ALA ALA G . n C 1 56 ALA 56 57 57 ALA ALA G . n C 1 57 LYS 57 58 58 LYS LYS G . n C 1 58 ALA 58 59 59 ALA ALA G . n C 1 59 LYS 59 60 60 LYS LYS G . n C 1 60 ASP 60 61 61 ASP ASP G . n C 1 61 ASP 61 62 62 ASP ASP G . n C 1 62 TYR 62 63 63 TYR TYR G . n C 1 63 ASP 63 64 64 ASP ASP G . n C 1 64 ARG 64 65 65 ARG ARG G . n C 1 65 ALA 65 66 66 ALA ALA G . n C 1 66 VAL 66 67 67 VAL VAL G . n C 1 67 LYS 67 68 68 LYS LYS G . n C 1 68 GLU 68 69 69 GLU GLU G . n C 1 69 PHE 69 70 70 PHE PHE G . n C 1 70 GLU 70 71 71 GLU GLU G . n C 1 71 ALA 71 72 72 ALA ALA G . n C 1 72 ASN 72 73 73 ASN ASN G . n C 1 73 GLY 73 74 74 GLY GLY G . n D 1 1 SER 1 2 2 SER SER J . n D 1 2 ASP 2 3 3 ASP ASP J . n D 1 3 LYS 3 4 4 LYS LYS J . n D 1 4 PRO 4 5 5 PRO PRO J . n D 1 5 LYS 5 6 6 LYS LYS J . n D 1 6 ARG 6 7 7 ARG ARG J . n D 1 7 PRO 7 8 8 PRO PRO J . n D 1 8 LEU 8 9 9 LEU LEU J . n D 1 9 SER 9 10 10 SER SER J . n D 1 10 ALA 10 11 11 ALA ALA J . n D 1 11 TYR 11 12 12 TYR TYR J . n D 1 12 ALA 12 13 13 ALA ALA J . n D 1 13 LEU 13 14 14 LEU LEU J . n D 1 14 TRP 14 15 15 TRP TRP J . n D 1 15 LEU 15 16 16 LEU LEU J . n D 1 16 ASN 16 17 17 ASN ASN J . n D 1 17 SER 17 18 18 SER SER J . n D 1 18 ALA 18 19 19 ALA ALA J . n D 1 19 ARG 19 20 20 ARG ARG J . n D 1 20 GLU 20 21 21 GLU GLU J . n D 1 21 SER 21 22 22 SER SER J . n D 1 22 ILE 22 23 23 ILE ILE J . n D 1 23 LYS 23 24 24 LYS LYS J . n D 1 24 ARG 24 25 25 ARG ARG J . n D 1 25 GLU 25 26 26 GLU GLU J . n D 1 26 ASN 26 27 27 ASN ASN J . n D 1 27 PRO 27 28 28 PRO PRO J . n D 1 28 GLY 28 29 29 GLY GLY J . n D 1 29 ILE 29 30 30 ILE ILE J . n D 1 30 LYS 30 31 31 LYS LYS J . n D 1 31 VAL 31 32 32 VAL VAL J . n D 1 32 THR 32 33 33 THR THR J . n D 1 33 GLU 33 34 34 GLU GLU J . n D 1 34 VAL 34 35 35 VAL VAL J . n D 1 35 ALA 35 36 36 ALA ALA J . n D 1 36 LYS 36 37 37 LYS LYS J . n D 1 37 ARG 37 38 38 ARG ARG J . n D 1 38 GLY 38 39 39 GLY GLY J . n D 1 39 GLY 39 40 40 GLY GLY J . n D 1 40 GLU 40 41 41 GLU GLU J . n D 1 41 LEU 41 42 42 LEU LEU J . n D 1 42 TRP 42 43 43 TRP TRP J . n D 1 43 ARG 43 44 44 ARG ARG J . n D 1 44 ALA 44 45 45 ALA ALA J . n D 1 45 MET 45 46 46 MET MET J . n D 1 46 LYS 46 47 47 LYS LYS J . n D 1 47 ASP 47 48 48 ASP ASP J . n D 1 48 LYS 48 49 49 LYS LYS J . n D 1 49 SER 49 50 50 SER SER J . n D 1 50 GLU 50 51 51 GLU GLU J . n D 1 51 TRP 51 52 52 TRP TRP J . n D 1 52 GLU 52 53 53 GLU GLU J . n D 1 53 ALA 53 54 54 ALA ALA J . n D 1 54 LYS 54 55 55 LYS LYS J . n D 1 55 ALA 55 56 56 ALA ALA J . n D 1 56 ALA 56 57 57 ALA ALA J . n D 1 57 LYS 57 58 58 LYS LYS J . n D 1 58 ALA 58 59 59 ALA ALA J . n D 1 59 LYS 59 60 60 LYS LYS J . n D 1 60 ASP 60 61 61 ASP ASP J . n D 1 61 ASP 61 62 62 ASP ASP J . n D 1 62 TYR 62 63 63 TYR TYR J . n D 1 63 ASP 63 64 64 ASP ASP J . n D 1 64 ARG 64 65 65 ARG ARG J . n D 1 65 ALA 65 66 66 ALA ALA J . n D 1 66 VAL 66 67 67 VAL VAL J . n D 1 67 LYS 67 68 68 LYS LYS J . n D 1 68 GLU 68 69 69 GLU GLU J . n D 1 69 PHE 69 70 70 PHE PHE J . n D 1 70 GLU 70 71 71 GLU GLU J . n D 1 71 ALA 71 72 72 ALA ALA J . n D 1 72 ASN 72 73 73 ASN ASN J . n D 1 73 GLY 73 74 74 GLY GLY J . n E 1 1 SER 1 2 2 SER SER M . n E 1 2 ASP 2 3 3 ASP ASP M . n E 1 3 LYS 3 4 4 LYS LYS M . n E 1 4 PRO 4 5 5 PRO PRO M . n E 1 5 LYS 5 6 6 LYS LYS M . n E 1 6 ARG 6 7 7 ARG ARG M . n E 1 7 PRO 7 8 8 PRO PRO M . n E 1 8 LEU 8 9 9 LEU LEU M . n E 1 9 SER 9 10 10 SER SER M . n E 1 10 ALA 10 11 11 ALA ALA M . n E 1 11 TYR 11 12 12 TYR TYR M . n E 1 12 ALA 12 13 13 ALA ALA M . n E 1 13 LEU 13 14 14 LEU LEU M . n E 1 14 TRP 14 15 15 TRP TRP M . n E 1 15 LEU 15 16 16 LEU LEU M . n E 1 16 ASN 16 17 17 ASN ASN M . n E 1 17 SER 17 18 18 SER SER M . n E 1 18 ALA 18 19 19 ALA ALA M . n E 1 19 ARG 19 20 20 ARG ARG M . n E 1 20 GLU 20 21 21 GLU GLU M . n E 1 21 SER 21 22 22 SER SER M . n E 1 22 ILE 22 23 23 ILE ILE M . n E 1 23 LYS 23 24 24 LYS LYS M . n E 1 24 ARG 24 25 25 ARG ARG M . n E 1 25 GLU 25 26 26 GLU GLU M . n E 1 26 ASN 26 27 27 ASN ASN M . n E 1 27 PRO 27 28 28 PRO PRO M . n E 1 28 GLY 28 29 29 GLY GLY M . n E 1 29 ILE 29 30 30 ILE ILE M . n E 1 30 LYS 30 31 31 LYS LYS M . n E 1 31 VAL 31 32 32 VAL VAL M . n E 1 32 THR 32 33 33 THR THR M . n E 1 33 GLU 33 34 34 GLU GLU M . n E 1 34 VAL 34 35 35 VAL VAL M . n E 1 35 ALA 35 36 36 ALA ALA M . n E 1 36 LYS 36 37 37 LYS LYS M . n E 1 37 ARG 37 38 38 ARG ARG M . n E 1 38 GLY 38 39 39 GLY GLY M . n E 1 39 GLY 39 40 40 GLY GLY M . n E 1 40 GLU 40 41 41 GLU GLU M . n E 1 41 LEU 41 42 42 LEU LEU M . n E 1 42 TRP 42 43 43 TRP TRP M . n E 1 43 ARG 43 44 44 ARG ARG M . n E 1 44 ALA 44 45 45 ALA ALA M . n E 1 45 MET 45 46 46 MET MET M . n E 1 46 LYS 46 47 47 LYS LYS M . n E 1 47 ASP 47 48 48 ASP ASP M . n E 1 48 LYS 48 49 49 LYS LYS M . n E 1 49 SER 49 50 50 SER SER M . n E 1 50 GLU 50 51 51 GLU GLU M . n E 1 51 TRP 51 52 52 TRP TRP M . n E 1 52 GLU 52 53 53 GLU GLU M . n E 1 53 ALA 53 54 54 ALA ALA M . n E 1 54 LYS 54 55 55 LYS LYS M . n E 1 55 ALA 55 56 56 ALA ALA M . n E 1 56 ALA 56 57 57 ALA ALA M . n E 1 57 LYS 57 58 58 LYS LYS M . n E 1 58 ALA 58 59 59 ALA ALA M . n E 1 59 LYS 59 60 60 LYS LYS M . n E 1 60 ASP 60 61 61 ASP ASP M . n E 1 61 ASP 61 62 62 ASP ASP M . n E 1 62 TYR 62 63 63 TYR TYR M . n E 1 63 ASP 63 64 64 ASP ASP M . n E 1 64 ARG 64 65 65 ARG ARG M . n E 1 65 ALA 65 66 66 ALA ALA M . n E 1 66 VAL 66 67 67 VAL VAL M . n E 1 67 LYS 67 68 68 LYS LYS M . n E 1 68 GLU 68 69 69 GLU GLU M . n E 1 69 PHE 69 70 70 PHE PHE M . n E 1 70 GLU 70 71 71 GLU GLU M . n E 1 71 ALA 71 72 72 ALA ALA M . n E 1 72 ASN 72 73 73 ASN ASN M . n E 1 73 GLY 73 74 74 GLY GLY M . n F 1 1 SER 1 2 2 SER SER P . n F 1 2 ASP 2 3 3 ASP ASP P . n F 1 3 LYS 3 4 4 LYS LYS P . n F 1 4 PRO 4 5 5 PRO PRO P . n F 1 5 LYS 5 6 6 LYS LYS P . n F 1 6 ARG 6 7 7 ARG ARG P . n F 1 7 PRO 7 8 8 PRO PRO P . n F 1 8 LEU 8 9 9 LEU LEU P . n F 1 9 SER 9 10 10 SER SER P . n F 1 10 ALA 10 11 11 ALA ALA P . n F 1 11 TYR 11 12 12 TYR TYR P . n F 1 12 ALA 12 13 13 ALA ALA P . n F 1 13 LEU 13 14 14 LEU LEU P . n F 1 14 TRP 14 15 15 TRP TRP P . n F 1 15 LEU 15 16 16 LEU LEU P . n F 1 16 ASN 16 17 17 ASN ASN P . n F 1 17 SER 17 18 18 SER SER P . n F 1 18 ALA 18 19 19 ALA ALA P . n F 1 19 ARG 19 20 20 ARG ARG P . n F 1 20 GLU 20 21 21 GLU GLU P . n F 1 21 SER 21 22 22 SER SER P . n F 1 22 ILE 22 23 23 ILE ILE P . n F 1 23 LYS 23 24 24 LYS LYS P . n F 1 24 ARG 24 25 25 ARG ARG P . n F 1 25 GLU 25 26 26 GLU GLU P . n F 1 26 ASN 26 27 27 ASN ASN P . n F 1 27 PRO 27 28 28 PRO PRO P . n F 1 28 GLY 28 29 29 GLY GLY P . n F 1 29 ILE 29 30 30 ILE ILE P . n F 1 30 LYS 30 31 31 LYS LYS P . n F 1 31 VAL 31 32 32 VAL VAL P . n F 1 32 THR 32 33 33 THR THR P . n F 1 33 GLU 33 34 34 GLU GLU P . n F 1 34 VAL 34 35 35 VAL VAL P . n F 1 35 ALA 35 36 36 ALA ALA P . n F 1 36 LYS 36 37 37 LYS LYS P . n F 1 37 ARG 37 38 38 ARG ARG P . n F 1 38 GLY 38 39 39 GLY GLY P . n F 1 39 GLY 39 40 40 GLY GLY P . n F 1 40 GLU 40 41 41 GLU GLU P . n F 1 41 LEU 41 42 42 LEU LEU P . n F 1 42 TRP 42 43 43 TRP TRP P . n F 1 43 ARG 43 44 44 ARG ARG P . n F 1 44 ALA 44 45 45 ALA ALA P . n F 1 45 MET 45 46 46 MET MET P . n F 1 46 LYS 46 47 47 LYS LYS P . n F 1 47 ASP 47 48 48 ASP ASP P . n F 1 48 LYS 48 49 49 LYS LYS P . n F 1 49 SER 49 50 50 SER SER P . n F 1 50 GLU 50 51 51 GLU GLU P . n F 1 51 TRP 51 52 52 TRP TRP P . n F 1 52 GLU 52 53 53 GLU GLU P . n F 1 53 ALA 53 54 54 ALA ALA P . n F 1 54 LYS 54 55 55 LYS LYS P . n F 1 55 ALA 55 56 56 ALA ALA P . n F 1 56 ALA 56 57 57 ALA ALA P . n F 1 57 LYS 57 58 58 LYS LYS P . n F 1 58 ALA 58 59 59 ALA ALA P . n F 1 59 LYS 59 60 60 LYS LYS P . n F 1 60 ASP 60 61 61 ASP ASP P . n F 1 61 ASP 61 62 62 ASP ASP P . n F 1 62 TYR 62 63 63 TYR TYR P . n F 1 63 ASP 63 64 64 ASP ASP P . n F 1 64 ARG 64 65 65 ARG ARG P . n F 1 65 ALA 65 66 66 ALA ALA P . n F 1 66 VAL 66 67 67 VAL VAL P . n F 1 67 LYS 67 68 68 LYS LYS P . n F 1 68 GLU 68 69 69 GLU GLU P . n F 1 69 PHE 69 70 70 PHE PHE P . n F 1 70 GLU 70 71 71 GLU GLU P . n F 1 71 ALA 71 72 72 ALA ALA P . n F 1 72 ASN 72 73 73 ASN ASN P . n F 1 73 GLY 73 74 74 GLY GLY P . n G 2 1 DG 1 1 ? ? ? B . n G 2 2 DG 2 2 2 DG DG B . n G 2 3 DC 3 3 3 DC DC B . n G 2 4 DG 4 4 4 DG DG B . n G 2 5 DA 5 5 5 DA DA B . n G 2 6 DT 6 6 6 DT DT B . n G 2 7 DA 7 7 7 DA DA B . n G 2 8 DT 8 8 8 DT DT B . n G 2 9 DC 9 9 9 DC DC B . n G 2 10 DG 10 10 10 DG DG B . n G 2 11 DC 11 11 11 DC DC B . n H 2 1 DG 1 1 ? ? ? C . n H 2 2 DG 2 2 2 DG DG C . n H 2 3 DC 3 3 3 DC DC C . n H 2 4 DG 4 4 4 DG DG C . n H 2 5 DA 5 5 5 DA DA C . n H 2 6 DT 6 6 6 DT DT C . n H 2 7 DA 7 7 7 DA DA C . n H 2 8 DT 8 8 8 DT DT C . n H 2 9 DC 9 9 9 DC DC C . n H 2 10 DG 10 10 10 DG DG C . n H 2 11 DC 11 11 11 DC DC C . n I 2 1 DG 1 1 ? ? ? E . n I 2 2 DG 2 2 2 DG DG E . n I 2 3 DC 3 3 3 DC DC E . n I 2 4 DG 4 4 4 DG DG E . n I 2 5 DA 5 5 5 DA DA E . n I 2 6 DT 6 6 6 DT DT E . n I 2 7 DA 7 7 7 DA DA E . n I 2 8 DT 8 8 8 DT DT E . n I 2 9 DC 9 9 9 DC DC E . n I 2 10 DG 10 10 10 DG DG E . n I 2 11 DC 11 11 11 DC DC E . n J 2 1 DG 1 1 ? ? ? F . n J 2 2 DG 2 2 2 DG DG F . n J 2 3 DC 3 3 3 DC DC F . n J 2 4 DG 4 4 4 DG DG F . n J 2 5 DA 5 5 5 DA DA F . n J 2 6 DT 6 6 6 DT DT F . n J 2 7 DA 7 7 7 DA DA F . n J 2 8 DT 8 8 8 DT DT F . n J 2 9 DC 9 9 9 DC DC F . n J 2 10 DG 10 10 10 DG DG F . n J 2 11 DC 11 11 11 DC DC F . n K 2 1 DG 1 1 ? ? ? H . n K 2 2 DG 2 2 2 DG DG H . n K 2 3 DC 3 3 3 DC DC H . n K 2 4 DG 4 4 4 DG DG H . n K 2 5 DA 5 5 5 DA DA H . n K 2 6 DT 6 6 6 DT DT H . n K 2 7 DA 7 7 7 DA DA H . n K 2 8 DT 8 8 8 DT DT H . n K 2 9 DC 9 9 9 DC DC H . n K 2 10 DG 10 10 10 DG DG H . n K 2 11 DC 11 11 11 DC DC H . n L 2 1 DG 1 1 ? ? ? I . n L 2 2 DG 2 2 2 DG DG I . n L 2 3 DC 3 3 3 DC DC I . n L 2 4 DG 4 4 4 DG DG I . n L 2 5 DA 5 5 5 DA DA I . n L 2 6 DT 6 6 6 DT DT I . n L 2 7 DA 7 7 7 DA DA I . n L 2 8 DT 8 8 8 DT DT I . n L 2 9 DC 9 9 9 DC DC I . n L 2 10 DG 10 10 10 DG DG I . n L 2 11 DC 11 11 11 DC DC I . n M 2 1 DG 1 1 ? ? ? K . n M 2 2 DG 2 2 2 DG DG K . n M 2 3 DC 3 3 3 DC DC K . n M 2 4 DG 4 4 4 DG DG K . n M 2 5 DA 5 5 5 DA DA K . n M 2 6 DT 6 6 6 DT DT K . n M 2 7 DA 7 7 7 DA DA K . n M 2 8 DT 8 8 8 DT DT K . n M 2 9 DC 9 9 9 DC DC K . n M 2 10 DG 10 10 10 DG DG K . n M 2 11 DC 11 11 11 DC DC K . n N 2 1 DG 1 1 1 DG DG L . n N 2 2 DG 2 2 2 DG DG L . n N 2 3 DC 3 3 3 DC DC L . n N 2 4 DG 4 4 4 DG DG L . n N 2 5 DA 5 5 5 DA DA L . n N 2 6 DT 6 6 6 DT DT L . n N 2 7 DA 7 7 7 DA DA L . n N 2 8 DT 8 8 8 DT DT L . n N 2 9 DC 9 9 9 DC DC L . n N 2 10 DG 10 10 10 DG DG L . n N 2 11 DC 11 11 11 DC DC L . n O 2 1 DG 1 1 ? ? ? N . n O 2 2 DG 2 2 2 DG DG N . n O 2 3 DC 3 3 3 DC DC N . n O 2 4 DG 4 4 4 DG DG N . n O 2 5 DA 5 5 5 DA DA N . n O 2 6 DT 6 6 6 DT DT N . n O 2 7 DA 7 7 7 DA DA N . n O 2 8 DT 8 8 8 DT DT N . n O 2 9 DC 9 9 9 DC DC N . n O 2 10 DG 10 10 10 DG DG N . n O 2 11 DC 11 11 11 DC DC N . n P 2 1 DG 1 1 ? ? ? O . n P 2 2 DG 2 2 2 DG DG O . n P 2 3 DC 3 3 3 DC DC O . n P 2 4 DG 4 4 4 DG DG O . n P 2 5 DA 5 5 5 DA DA O . n P 2 6 DT 6 6 6 DT DT O . n P 2 7 DA 7 7 7 DA DA O . n P 2 8 DT 8 8 8 DT DT O . n P 2 9 DC 9 9 9 DC DC O . n P 2 10 DG 10 10 10 DG DG O . n P 2 11 DC 11 11 11 DC DC O . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 HOH 1 75 75 HOH HOH D . R 3 HOH 1 75 75 HOH HOH M . S 3 HOH 1 75 75 HOH HOH P . T 3 HOH 1 75 75 HOH HOH K . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0005 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 25 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP1 _pdbx_validate_close_contact.auth_asym_id_2 O _pdbx_validate_close_contact.auth_comp_id_2 DG _pdbx_validate_close_contact.auth_seq_id_2 10 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DT 6 ? ? C7 B DT 6 ? ? 1.622 1.496 0.126 0.006 N 2 1 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.535 1.496 0.039 0.006 N 3 1 C5 C DT 8 ? ? C7 C DT 8 ? ? 1.603 1.496 0.107 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 110.54 108.30 2.24 0.30 N 2 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 110.24 108.30 1.94 0.30 N 3 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1 B DT 6 ? ? 112.29 108.30 3.99 0.30 N 4 1 "O4'" C DA 5 ? ? "C1'" C DA 5 ? ? N9 C DA 5 ? ? 111.23 108.30 2.93 0.30 N 5 1 "O4'" C DT 8 ? ? "C1'" C DT 8 ? ? N1 C DT 8 ? ? 111.54 108.30 3.24 0.30 N 6 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? N1 C DC 11 ? ? 111.49 108.30 3.19 0.30 N 7 1 "O4'" E DT 8 ? ? "C1'" E DT 8 ? ? N1 E DT 8 ? ? 112.76 108.30 4.46 0.30 N 8 1 "O4'" E DC 9 ? ? "C1'" E DC 9 ? ? N1 E DC 9 ? ? 110.69 108.30 2.39 0.30 N 9 1 "O4'" E DC 11 ? ? "C1'" E DC 11 ? ? N1 E DC 11 ? ? 110.40 108.30 2.10 0.30 N 10 1 "O4'" F DG 2 ? ? "C1'" F DG 2 ? ? N9 F DG 2 ? ? 112.01 108.30 3.71 0.30 N 11 1 "O4'" F DG 4 ? ? "C1'" F DG 4 ? ? N9 F DG 4 ? ? 110.22 108.30 1.92 0.30 N 12 1 "C3'" H DG 4 ? ? "C2'" H DG 4 ? ? "C1'" H DG 4 ? ? 97.09 102.40 -5.31 0.80 N 13 1 "O4'" H DG 4 ? ? "C1'" H DG 4 ? ? N9 H DG 4 ? ? 110.10 108.30 1.80 0.30 N 14 1 "O4'" H DA 7 ? ? "C1'" H DA 7 ? ? N9 H DA 7 ? ? 111.20 108.30 2.90 0.30 N 15 1 "O4'" H DC 9 ? ? "C1'" H DC 9 ? ? N1 H DC 9 ? ? 113.38 108.30 5.08 0.30 N 16 1 "O4'" I DG 2 ? ? "C1'" I DG 2 ? ? N9 I DG 2 ? ? 111.03 108.30 2.73 0.30 N 17 1 "O4'" I DC 3 ? ? "C1'" I DC 3 ? ? N1 I DC 3 ? ? 112.16 108.30 3.86 0.30 N 18 1 "O4'" I DA 5 ? ? "C1'" I DA 5 ? ? N9 I DA 5 ? ? 111.04 108.30 2.74 0.30 N 19 1 "O4'" I DT 6 ? ? "C1'" I DT 6 ? ? N1 I DT 6 ? ? 110.98 108.30 2.68 0.30 N 20 1 "O4'" I DT 8 ? ? "C4'" I DT 8 ? ? "C3'" I DT 8 ? ? 101.77 104.50 -2.73 0.40 N 21 1 "O4'" I DT 8 ? ? "C1'" I DT 8 ? ? N1 I DT 8 ? ? 112.50 108.30 4.20 0.30 N 22 1 "O4'" K DG 2 ? ? "C1'" K DG 2 ? ? N9 K DG 2 ? ? 110.96 108.30 2.66 0.30 N 23 1 "O4'" K DC 3 ? ? "C1'" K DC 3 ? ? N1 K DC 3 ? ? 110.12 108.30 1.82 0.30 N 24 1 "C3'" K DG 4 ? ? "C2'" K DG 4 ? ? "C1'" K DG 4 ? ? 97.20 102.40 -5.20 0.80 N 25 1 "O4'" K DG 4 ? ? "C1'" K DG 4 ? ? N9 K DG 4 ? ? 112.19 108.30 3.89 0.30 N 26 1 "O4'" K DA 5 ? ? "C1'" K DA 5 ? ? N9 K DA 5 ? ? 112.66 108.30 4.36 0.30 N 27 1 "O4'" K DT 6 ? ? "C1'" K DT 6 ? ? N1 K DT 6 ? ? 114.33 108.30 6.03 0.30 N 28 1 "O4'" K DA 7 ? ? "C1'" K DA 7 ? ? N9 K DA 7 ? ? 111.70 108.30 3.40 0.30 N 29 1 "O4'" K DC 11 ? ? "C4'" K DC 11 ? ? "C3'" K DC 11 ? ? 101.51 104.50 -2.99 0.40 N 30 1 "O4'" K DC 11 ? ? "C1'" K DC 11 ? ? N1 K DC 11 ? ? 113.32 108.30 5.02 0.30 N 31 1 "O4'" L DG 2 ? ? "C1'" L DG 2 ? ? N9 L DG 2 ? ? 110.20 108.30 1.90 0.30 N 32 1 "O4'" L DC 3 ? ? "C1'" L DC 3 ? ? N1 L DC 3 ? ? 112.43 108.30 4.13 0.30 N 33 1 "O4'" L DG 4 ? ? "C1'" L DG 4 ? ? N9 L DG 4 ? ? 110.33 108.30 2.03 0.30 N 34 1 "O4'" L DG 10 ? ? "C1'" L DG 10 ? ? N9 L DG 10 ? ? 110.22 108.30 1.92 0.30 N 35 1 "O4'" L DC 11 ? ? "C4'" L DC 11 ? ? "C3'" L DC 11 ? ? 101.97 104.50 -2.53 0.40 N 36 1 "O4'" L DC 11 ? ? "C1'" L DC 11 ? ? N1 L DC 11 ? ? 112.38 108.30 4.08 0.30 N 37 1 "O4'" N DC 3 ? ? "C1'" N DC 3 ? ? N1 N DC 3 ? ? 111.73 108.30 3.43 0.30 N 38 1 "O4'" N DG 10 ? ? "C1'" N DG 10 ? ? N9 N DG 10 ? ? 112.59 108.30 4.29 0.30 N 39 1 "C3'" O DT 6 ? ? "O3'" O DT 6 ? ? P O DA 7 ? ? 127.06 119.70 7.36 1.20 Y 40 1 "O4'" O DC 9 ? ? "C1'" O DC 9 ? ? N1 O DC 9 ? ? 110.92 108.30 2.62 0.30 N 41 1 "O4'" O DG 10 ? ? "C1'" O DG 10 ? ? N9 O DG 10 ? ? 111.32 108.30 3.02 0.30 N 42 1 "O4'" O DC 11 ? ? "C1'" O DC 11 ? ? N1 O DC 11 ? ? 115.61 108.30 7.31 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -35.32 125.65 2 1 ALA A 72 ? ? -79.40 -70.02 3 1 ASP D 61 ? ? -64.71 -70.13 4 1 ASP D 62 ? ? -28.14 -57.12 5 1 ALA G 72 ? ? -174.45 -47.37 6 1 ASN G 73 ? ? -97.64 37.49 7 1 ASP J 3 ? ? -74.31 -127.23 8 1 ALA J 19 ? ? -146.09 -10.15 9 1 VAL J 32 ? ? -37.04 -37.30 10 1 GLU J 41 ? ? -47.80 -17.54 11 1 ARG J 44 ? ? -56.08 39.80 12 1 ALA J 45 ? ? -167.01 -12.81 13 1 LYS J 47 ? ? -90.85 -82.37 14 1 ASN J 73 ? ? -90.08 -131.98 15 1 ALA M 19 ? ? -140.51 -1.91 16 1 VAL M 32 ? ? -67.02 4.36 17 1 LYS M 47 ? ? -138.36 -54.68 18 1 ASN M 73 ? ? -80.86 47.06 19 1 LYS P 4 ? ? -32.62 115.93 20 1 SER P 50 ? ? -68.63 -75.35 21 1 ALA P 72 ? ? -75.27 -81.78 22 1 ASN P 73 ? ? -79.34 -116.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DG 2 ? P ? G DG 2 P 2 1 Y 1 B DG 2 ? OP1 ? G DG 2 OP1 3 1 Y 1 B DG 2 ? OP2 ? G DG 2 OP2 4 1 Y 1 C DG 2 ? P ? H DG 2 P 5 1 Y 1 C DG 2 ? OP1 ? H DG 2 OP1 6 1 Y 1 C DG 2 ? OP2 ? H DG 2 OP2 7 1 Y 1 E DG 2 ? P ? I DG 2 P 8 1 Y 1 E DG 2 ? OP1 ? I DG 2 OP1 9 1 Y 1 E DG 2 ? OP2 ? I DG 2 OP2 10 1 Y 1 F DG 2 ? P ? J DG 2 P 11 1 Y 1 F DG 2 ? OP1 ? J DG 2 OP1 12 1 Y 1 F DG 2 ? OP2 ? J DG 2 OP2 13 1 Y 1 H DG 2 ? P ? K DG 2 P 14 1 Y 1 H DG 2 ? OP1 ? K DG 2 OP1 15 1 Y 1 H DG 2 ? OP2 ? K DG 2 OP2 16 1 Y 1 I DG 2 ? P ? L DG 2 P 17 1 Y 1 I DG 2 ? OP1 ? L DG 2 OP1 18 1 Y 1 I DG 2 ? OP2 ? L DG 2 OP2 19 1 Y 1 K DG 2 ? P ? M DG 2 P 20 1 Y 1 K DG 2 ? OP1 ? M DG 2 OP1 21 1 Y 1 K DG 2 ? OP2 ? M DG 2 OP2 22 1 Y 1 N DG 2 ? P ? O DG 2 P 23 1 Y 1 N DG 2 ? OP1 ? O DG 2 OP1 24 1 Y 1 N DG 2 ? OP2 ? O DG 2 OP2 25 1 Y 1 O DG 2 ? P ? P DG 2 P 26 1 Y 1 O DG 2 ? OP1 ? P DG 2 OP1 27 1 Y 1 O DG 2 ? OP2 ? P DG 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DG 1 ? G DG 1 2 1 Y 1 C DG 1 ? H DG 1 3 1 Y 1 E DG 1 ? I DG 1 4 1 Y 1 F DG 1 ? J DG 1 5 1 Y 1 H DG 1 ? K DG 1 6 1 Y 1 I DG 1 ? L DG 1 7 1 Y 1 K DG 1 ? M DG 1 8 1 Y 1 N DG 1 ? O DG 1 9 1 Y 1 O DG 1 ? P DG 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLU N N N N 217 GLU CA C N S 218 GLU C C N N 219 GLU O O N N 220 GLU CB C N N 221 GLU CG C N N 222 GLU CD C N N 223 GLU OE1 O N N 224 GLU OE2 O N N 225 GLU OXT O N N 226 GLU H H N N 227 GLU H2 H N N 228 GLU HA H N N 229 GLU HB2 H N N 230 GLU HB3 H N N 231 GLU HG2 H N N 232 GLU HG3 H N N 233 GLU HE2 H N N 234 GLU HXT H N N 235 GLY N N N N 236 GLY CA C N N 237 GLY C C N N 238 GLY O O N N 239 GLY OXT O N N 240 GLY H H N N 241 GLY H2 H N N 242 GLY HA2 H N N 243 GLY HA3 H N N 244 GLY HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 MET N N N N 318 MET CA C N S 319 MET C C N N 320 MET O O N N 321 MET CB C N N 322 MET CG C N N 323 MET SD S N N 324 MET CE C N N 325 MET OXT O N N 326 MET H H N N 327 MET H2 H N N 328 MET HA H N N 329 MET HB2 H N N 330 MET HB3 H N N 331 MET HG2 H N N 332 MET HG3 H N N 333 MET HE1 H N N 334 MET HE2 H N N 335 MET HE3 H N N 336 MET HXT H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TRP N N N N 409 TRP CA C N S 410 TRP C C N N 411 TRP O O N N 412 TRP CB C N N 413 TRP CG C Y N 414 TRP CD1 C Y N 415 TRP CD2 C Y N 416 TRP NE1 N Y N 417 TRP CE2 C Y N 418 TRP CE3 C Y N 419 TRP CZ2 C Y N 420 TRP CZ3 C Y N 421 TRP CH2 C Y N 422 TRP OXT O N N 423 TRP H H N N 424 TRP H2 H N N 425 TRP HA H N N 426 TRP HB2 H N N 427 TRP HB3 H N N 428 TRP HD1 H N N 429 TRP HE1 H N N 430 TRP HE3 H N N 431 TRP HZ2 H N N 432 TRP HZ3 H N N 433 TRP HH2 H N N 434 TRP HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 VAL N N N N 460 VAL CA C N S 461 VAL C C N N 462 VAL O O N N 463 VAL CB C N N 464 VAL CG1 C N N 465 VAL CG2 C N N 466 VAL OXT O N N 467 VAL H H N N 468 VAL H2 H N N 469 VAL HA H N N 470 VAL HB H N N 471 VAL HG11 H N N 472 VAL HG12 H N N 473 VAL HG13 H N N 474 VAL HG21 H N N 475 VAL HG22 H N N 476 VAL HG23 H N N 477 VAL HXT H N N 478 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLU N CA sing N N 219 GLU N H sing N N 220 GLU N H2 sing N N 221 GLU CA C sing N N 222 GLU CA CB sing N N 223 GLU CA HA sing N N 224 GLU C O doub N N 225 GLU C OXT sing N N 226 GLU CB CG sing N N 227 GLU CB HB2 sing N N 228 GLU CB HB3 sing N N 229 GLU CG CD sing N N 230 GLU CG HG2 sing N N 231 GLU CG HG3 sing N N 232 GLU CD OE1 doub N N 233 GLU CD OE2 sing N N 234 GLU OE2 HE2 sing N N 235 GLU OXT HXT sing N N 236 GLY N CA sing N N 237 GLY N H sing N N 238 GLY N H2 sing N N 239 GLY CA C sing N N 240 GLY CA HA2 sing N N 241 GLY CA HA3 sing N N 242 GLY C O doub N N 243 GLY C OXT sing N N 244 GLY OXT HXT sing N N 245 HOH O H1 sing N N 246 HOH O H2 sing N N 247 ILE N CA sing N N 248 ILE N H sing N N 249 ILE N H2 sing N N 250 ILE CA C sing N N 251 ILE CA CB sing N N 252 ILE CA HA sing N N 253 ILE C O doub N N 254 ILE C OXT sing N N 255 ILE CB CG1 sing N N 256 ILE CB CG2 sing N N 257 ILE CB HB sing N N 258 ILE CG1 CD1 sing N N 259 ILE CG1 HG12 sing N N 260 ILE CG1 HG13 sing N N 261 ILE CG2 HG21 sing N N 262 ILE CG2 HG22 sing N N 263 ILE CG2 HG23 sing N N 264 ILE CD1 HD11 sing N N 265 ILE CD1 HD12 sing N N 266 ILE CD1 HD13 sing N N 267 ILE OXT HXT sing N N 268 LEU N CA sing N N 269 LEU N H sing N N 270 LEU N H2 sing N N 271 LEU CA C sing N N 272 LEU CA CB sing N N 273 LEU CA HA sing N N 274 LEU C O doub N N 275 LEU C OXT sing N N 276 LEU CB CG sing N N 277 LEU CB HB2 sing N N 278 LEU CB HB3 sing N N 279 LEU CG CD1 sing N N 280 LEU CG CD2 sing N N 281 LEU CG HG sing N N 282 LEU CD1 HD11 sing N N 283 LEU CD1 HD12 sing N N 284 LEU CD1 HD13 sing N N 285 LEU CD2 HD21 sing N N 286 LEU CD2 HD22 sing N N 287 LEU CD2 HD23 sing N N 288 LEU OXT HXT sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 MET N CA sing N N 314 MET N H sing N N 315 MET N H2 sing N N 316 MET CA C sing N N 317 MET CA CB sing N N 318 MET CA HA sing N N 319 MET C O doub N N 320 MET C OXT sing N N 321 MET CB CG sing N N 322 MET CB HB2 sing N N 323 MET CB HB3 sing N N 324 MET CG SD sing N N 325 MET CG HG2 sing N N 326 MET CG HG3 sing N N 327 MET SD CE sing N N 328 MET CE HE1 sing N N 329 MET CE HE2 sing N N 330 MET CE HE3 sing N N 331 MET OXT HXT sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 THR N CA sing N N 386 THR N H sing N N 387 THR N H2 sing N N 388 THR CA C sing N N 389 THR CA CB sing N N 390 THR CA HA sing N N 391 THR C O doub N N 392 THR C OXT sing N N 393 THR CB OG1 sing N N 394 THR CB CG2 sing N N 395 THR CB HB sing N N 396 THR OG1 HG1 sing N N 397 THR CG2 HG21 sing N N 398 THR CG2 HG22 sing N N 399 THR CG2 HG23 sing N N 400 THR OXT HXT sing N N 401 TRP N CA sing N N 402 TRP N H sing N N 403 TRP N H2 sing N N 404 TRP CA C sing N N 405 TRP CA CB sing N N 406 TRP CA HA sing N N 407 TRP C O doub N N 408 TRP C OXT sing N N 409 TRP CB CG sing N N 410 TRP CB HB2 sing N N 411 TRP CB HB3 sing N N 412 TRP CG CD1 doub Y N 413 TRP CG CD2 sing Y N 414 TRP CD1 NE1 sing Y N 415 TRP CD1 HD1 sing N N 416 TRP CD2 CE2 doub Y N 417 TRP CD2 CE3 sing Y N 418 TRP NE1 CE2 sing Y N 419 TRP NE1 HE1 sing N N 420 TRP CE2 CZ2 sing Y N 421 TRP CE3 CZ3 doub Y N 422 TRP CE3 HE3 sing N N 423 TRP CZ2 CH2 doub Y N 424 TRP CZ2 HZ2 sing N N 425 TRP CZ3 CH2 sing Y N 426 TRP CZ3 HZ3 sing N N 427 TRP CH2 HH2 sing N N 428 TRP OXT HXT sing N N 429 TYR N CA sing N N 430 TYR N H sing N N 431 TYR N H2 sing N N 432 TYR CA C sing N N 433 TYR CA CB sing N N 434 TYR CA HA sing N N 435 TYR C O doub N N 436 TYR C OXT sing N N 437 TYR CB CG sing N N 438 TYR CB HB2 sing N N 439 TYR CB HB3 sing N N 440 TYR CG CD1 doub Y N 441 TYR CG CD2 sing Y N 442 TYR CD1 CE1 sing Y N 443 TYR CD1 HD1 sing N N 444 TYR CD2 CE2 doub Y N 445 TYR CD2 HD2 sing N N 446 TYR CE1 CZ doub Y N 447 TYR CE1 HE1 sing N N 448 TYR CE2 CZ sing Y N 449 TYR CE2 HE2 sing N N 450 TYR CZ OH sing N N 451 TYR OH HH sing N N 452 TYR OXT HXT sing N N 453 VAL N CA sing N N 454 VAL N H sing N N 455 VAL N H2 sing N N 456 VAL CA C sing N N 457 VAL CA CB sing N N 458 VAL CA HA sing N N 459 VAL C O doub N N 460 VAL C OXT sing N N 461 VAL CB CG1 sing N N 462 VAL CB CG2 sing N N 463 VAL CB HB sing N N 464 VAL CG1 HG11 sing N N 465 VAL CG1 HG12 sing N N 466 VAL CG1 HG13 sing N N 467 VAL CG2 HG21 sing N N 468 VAL CG2 HG22 sing N N 469 VAL CG2 HG23 sing N N 470 VAL OXT HXT sing N N 471 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NM9 'double helix' 3NM9 'b-form double helix' 3NM9 'bulge loop' 3NM9 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 H DG 2 1_555 G DC 11 1_555 1.579 0.001 0.145 -1.450 7.346 5.406 1 C_DG2:DC11_B C 2 ? B 11 ? 19 1 1 H DC 3 1_555 G DG 10 1_555 -2.695 0.181 -0.833 13.987 -5.784 -4.178 2 C_DC3:DG10_B C 3 ? B 10 ? ? ? 1 H DG 4 1_555 G DC 9 1_555 -2.036 -0.596 0.717 20.302 -13.428 -2.132 3 C_DG4:DC9_B C 4 ? B 9 ? 19 1 1 H DA 5 1_555 G DT 8 1_555 0.401 0.401 0.788 13.661 -13.251 4.268 4 C_DA5:DT8_B C 5 ? B 8 ? ? ? 1 H DA 7 1_555 G DT 6 1_555 1.103 0.792 -0.422 -5.000 -15.868 -12.783 5 C_DA7:DT6_B C 7 ? B 6 ? ? ? 1 H DT 8 1_555 G DA 5 1_555 1.222 -0.014 0.645 2.819 -12.430 -5.728 6 C_DT8:DA5_B C 8 ? B 5 ? 20 1 1 H DC 9 1_555 G DG 4 1_555 -0.252 -0.154 0.498 -12.028 -0.245 3.184 7 C_DC9:DG4_B C 9 ? B 4 ? 19 1 1 H DC 11 1_555 G DG 2 1_555 -0.718 -0.008 -0.085 8.146 -4.304 -24.509 8 C_DC11:DG2_B C 11 ? B 2 ? ? ? 1 P DG 2 1_555 O DC 11 1_555 0.009 0.436 -0.419 3.381 -6.404 6.289 9 O_DG2:DC11_N O 2 ? N 11 ? ? 1 1 P DC 3 1_555 O DG 10 1_555 0.226 -0.066 0.086 8.488 -10.088 6.955 10 O_DC3:DG10_N O 3 ? N 10 ? 19 1 1 P DG 4 1_555 O DC 9 1_555 0.350 -0.223 -0.093 -0.310 -12.896 -4.913 11 O_DG4:DC9_N O 4 ? N 9 ? 19 1 1 P DA 5 1_555 O DT 8 1_555 -0.028 -0.525 0.237 -2.200 -10.242 -2.706 12 O_DA5:DT8_N O 5 ? N 8 ? 20 1 1 P DT 6 1_555 O DA 7 1_555 -0.045 -0.172 0.152 6.237 -5.464 2.814 13 O_DT6:DA7_N O 6 ? N 7 ? 20 1 1 P DA 7 1_555 O DT 6 1_555 0.448 -0.111 0.028 -6.130 -4.348 1.722 14 O_DA7:DT6_N O 7 ? N 6 ? 20 1 1 P DT 8 1_555 O DA 5 1_555 0.390 -0.168 -0.449 6.841 -20.040 -2.824 15 O_DT8:DA5_N O 8 ? N 5 ? 20 1 1 P DC 9 1_555 O DG 4 1_555 0.343 -0.611 -0.171 7.855 -22.658 -1.077 16 O_DC9:DG4_N O 9 ? N 4 ? 19 1 1 P DG 10 1_555 O DC 3 1_555 -1.071 -0.529 0.155 5.188 -4.302 2.029 17 O_DG10:DC3_N O 10 ? N 3 ? 19 1 1 P DC 11 1_555 O DG 2 1_555 0.312 -0.140 -0.235 5.175 -3.557 2.181 18 O_DC11:DG2_N O 11 ? N 2 ? 19 1 1 L DG 2 1_555 K DC 11 1_555 -1.051 -0.479 0.082 3.597 -9.586 -2.922 19 I_DG2:DC11_H I 2 ? H 11 ? 19 1 1 L DC 3 1_555 K DG 10 1_555 0.464 -0.161 0.327 3.786 -5.397 -6.119 20 I_DC3:DG10_H I 3 ? H 10 ? 19 1 1 L DG 4 1_555 K DC 9 1_555 0.736 -0.041 0.161 2.020 -6.836 -3.680 21 I_DG4:DC9_H I 4 ? H 9 ? 19 1 1 L DA 5 1_555 K DT 8 1_555 0.400 -0.232 -0.038 0.001 -8.506 -4.928 22 I_DA5:DT8_H I 5 ? H 8 ? 20 1 1 L DT 6 1_555 K DA 7 1_555 -0.208 -0.386 -0.393 4.099 -4.541 0.427 23 I_DT6:DA7_H I 6 ? H 7 ? 20 1 1 L DA 7 1_555 K DT 6 1_555 0.309 0.092 0.370 -5.245 -1.798 12.501 24 I_DA7:DT6_H I 7 ? H 6 ? ? 1 1 L DT 8 1_555 K DA 5 1_555 0.123 -0.114 0.212 6.864 -14.497 11.281 25 I_DT8:DA5_H I 8 ? H 5 ? 20 1 1 L DC 9 1_555 K DG 4 1_555 0.830 -0.039 -0.722 24.195 -12.311 3.829 26 I_DC9:DG4_H I 9 ? H 4 ? 19 1 1 L DG 10 1_555 K DC 3 1_555 -0.584 -0.258 -0.183 -9.278 -3.723 0.248 27 I_DG10:DC3_H I 10 ? H 3 ? 19 1 1 L DC 11 1_555 K DG 2 1_555 0.833 0.004 0.205 8.789 0.343 0.739 28 I_DC11:DG2_H I 11 ? H 2 ? 19 1 1 I DG 2 1_555 J DC 11 1_555 0.145 0.000 0.135 2.419 3.414 -4.354 29 E_DG2:DC11_F E 2 ? F 11 ? 19 1 1 I DC 3 1_555 J DG 10 1_555 -0.691 -0.149 0.722 -8.248 -5.376 -3.611 30 E_DC3:DG10_F E 3 ? F 10 ? 19 1 1 I DG 4 1_555 J DC 9 1_555 -0.055 -0.406 -0.069 3.219 -13.574 -1.146 31 E_DG4:DC9_F E 4 ? F 9 ? 19 1 1 I DA 5 1_555 J DT 8 1_555 0.440 -0.228 -0.621 -18.610 -22.324 1.995 32 E_DA5:DT8_F E 5 ? F 8 ? 20 1 1 I DT 6 1_555 J DA 7 1_555 -0.187 -0.110 -0.270 -9.566 -6.146 1.365 33 E_DT6:DA7_F E 6 ? F 7 ? 20 1 1 I DA 7 1_555 J DT 6 1_555 0.296 -0.159 -0.855 -3.628 -5.841 8.463 34 E_DA7:DT6_F E 7 ? F 6 ? 20 1 1 I DT 8 1_555 J DA 5 1_555 -0.217 -0.058 -0.533 8.424 -12.667 -6.059 35 E_DT8:DA5_F E 8 ? F 5 ? 20 1 1 I DC 9 1_555 J DG 4 1_555 0.220 -0.102 0.244 -0.204 -11.391 -0.628 36 E_DC9:DG4_F E 9 ? F 4 ? 19 1 1 I DG 10 1_555 J DC 3 1_555 0.084 -0.012 -0.366 -15.212 -9.861 -2.601 37 E_DG10:DC3_F E 10 ? F 3 ? 19 1 1 I DC 11 1_555 J DG 2 1_555 0.462 0.076 0.091 -0.467 -6.614 1.917 38 E_DC11:DG2_F E 11 ? F 2 ? 19 1 1 N DG 2 1_555 M DG 10 1_555 0.937 1.571 -1.011 -2.538 -34.240 -24.433 39 L_DG2:DG10_K L 2 ? K 10 ? ? ? 1 N DG 4 1_555 M DC 9 1_555 1.228 0.752 1.336 -1.842 -16.283 20.806 40 L_DG4:DC9_K L 4 ? K 9 ? ? 1 1 N DT 6 1_555 M DA 7 1_555 0.935 -0.360 0.749 10.483 -14.685 -3.709 41 L_DT6:DA7_K L 6 ? K 7 ? 20 1 1 N DA 7 1_555 M DT 6 1_555 1.795 -0.165 -0.112 6.988 -20.961 -2.113 42 L_DA7:DT6_K L 7 ? K 6 ? 20 1 1 N DC 9 1_555 M DG 4 1_555 0.740 -0.391 -0.488 5.965 -20.014 -2.839 43 L_DC9:DG4_K L 9 ? K 4 ? 19 1 1 N DG 10 1_555 M DC 3 1_555 0.745 0.519 -0.956 -21.562 -21.290 11.434 44 L_DG10:DC3_K L 10 ? K 3 ? ? 1 1 N DC 11 1_555 M DG 2 1_555 -2.518 0.531 -0.114 5.524 1.539 0.129 45 L_DC11:DG2_K L 11 ? K 2 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 H DG 2 1_555 G DC 11 1_555 H DC 3 1_555 G DG 10 1_555 -1.916 0.057 2.757 4.869 2.962 12.821 -1.849 11.271 1.871 12.487 -20.529 14.025 1 CC_DG2DC3:DG10DC11_BB C 2 ? B 11 ? C 3 ? B 10 ? 1 H DC 3 1_555 G DG 10 1_555 H DG 4 1_555 G DC 9 1_555 0.233 0.443 3.601 -0.923 -3.350 40.896 1.031 -0.442 3.550 -4.784 1.318 41.037 2 CC_DC3DG4:DC9DG10_BB C 3 ? B 10 ? C 4 ? B 9 ? 1 H DG 4 1_555 G DC 9 1_555 H DA 5 1_555 G DT 8 1_555 0.003 -0.616 3.146 -2.292 10.723 42.500 -1.786 -0.209 2.912 14.505 3.100 43.828 3 CC_DG4DA5:DT8DC9_BB C 4 ? B 9 ? C 5 ? B 8 ? 1 H DA 5 1_555 G DT 8 1_555 H DA 7 1_555 G DT 6 1_555 -1.048 -1.912 6.843 4.203 -1.146 81.827 -1.398 1.019 6.814 -0.874 -3.206 81.923 4 CC_DA5DA7:DT6DT8_BB C 5 ? B 8 ? C 7 ? B 6 ? 1 H DA 7 1_555 G DT 6 1_555 H DT 8 1_555 G DA 5 1_555 0.179 -1.110 3.242 -8.825 -1.924 27.955 -1.778 -2.244 3.110 -3.858 17.693 29.351 5 CC_DA7DT8:DA5DT6_BB C 7 ? B 6 ? C 8 ? B 5 ? 1 H DT 8 1_555 G DA 5 1_555 H DC 9 1_555 G DG 4 1_555 0.144 -0.849 3.429 0.209 9.809 35.014 -2.753 -0.202 3.088 15.921 -0.338 36.321 6 CC_DT8DC9:DG4DA5_BB C 8 ? B 5 ? C 9 ? B 4 ? 1 H DC 9 1_555 G DG 4 1_555 H DC 11 1_555 G DG 2 1_555 -0.166 0.322 6.221 0.004 1.988 64.009 0.141 0.156 6.227 1.875 -0.003 64.037 7 CC_DC9DC11:DG2DG4_BB C 9 ? B 4 ? C 11 ? B 2 ? 1 H DC 11 1_555 G DG 2 1_555 P DG 2 1_555 O DC 11 1_555 0.429 0.794 3.626 4.163 -1.288 -35.267 -1.093 1.375 3.580 2.116 6.839 -35.527 8 CO_DC11DG2:DC11DG2_NB C 11 ? B 2 ? O 2 ? N 11 ? 1 P DG 2 1_555 O DC 11 1_555 P DC 3 1_555 O DG 10 1_555 -0.650 -0.249 3.058 -6.841 2.916 34.456 -0.823 0.106 3.096 4.854 11.385 35.226 9 OO_DG2DC3:DG10DC11_NN O 2 ? N 11 ? O 3 ? N 10 ? 1 P DC 3 1_555 O DG 10 1_555 P DG 4 1_555 O DC 9 1_555 -0.778 0.294 3.480 -0.346 12.309 35.981 -1.250 1.149 3.404 19.245 0.540 37.964 10 OO_DC3DG4:DC9DG10_NN O 3 ? N 10 ? O 4 ? N 9 ? 1 P DG 4 1_555 O DC 9 1_555 P DA 5 1_555 O DT 8 1_555 0.301 -0.356 3.354 -2.088 -0.207 32.011 -0.607 -0.928 3.331 -0.374 3.781 32.077 11 OO_DG4DA5:DT8DC9_NN O 4 ? N 9 ? O 5 ? N 8 ? 1 P DA 5 1_555 O DT 8 1_555 P DT 6 1_555 O DA 7 1_555 0.269 -0.756 3.102 1.738 -1.643 31.269 -1.103 -0.185 3.146 -3.043 -3.218 31.358 12 OO_DA5DT6:DA7DT8_NN O 5 ? N 8 ? O 6 ? N 7 ? 1 P DT 6 1_555 O DA 7 1_555 P DA 7 1_555 O DT 6 1_555 0.027 -0.614 3.453 1.121 -1.539 45.245 -0.653 0.070 3.471 -2.000 -1.457 45.283 13 OO_DT6DA7:DT6DA7_NN O 6 ? N 7 ? O 7 ? N 6 ? 1 P DA 7 1_555 O DT 6 1_555 P DT 8 1_555 O DA 5 1_555 -0.256 -0.474 3.157 1.726 7.356 28.630 -2.400 0.847 2.926 14.556 -3.415 29.590 14 OO_DA7DT8:DA5DT6_NN O 7 ? N 6 ? O 8 ? N 5 ? 1 P DT 8 1_555 O DA 5 1_555 P DC 9 1_555 O DG 4 1_555 -0.205 -0.286 3.277 -3.931 9.940 26.929 -2.760 -0.455 2.985 20.356 8.049 28.937 15 OO_DT8DC9:DG4DA5_NN O 8 ? N 5 ? O 9 ? N 4 ? 1 P DC 9 1_555 O DG 4 1_555 P DG 10 1_555 O DC 3 1_555 0.187 0.310 3.427 -0.418 7.193 34.618 -0.612 -0.374 3.418 11.928 0.693 35.337 16 OO_DC9DG10:DC3DG4_NN O 9 ? N 4 ? O 10 ? N 3 ? 1 P DG 10 1_555 O DC 3 1_555 P DC 11 1_555 O DG 2 1_555 0.239 -0.354 3.196 3.771 0.977 40.405 -0.617 0.067 3.195 1.410 -5.444 40.584 17 OO_DG10DC11:DG2DC3_NN O 10 ? N 3 ? O 11 ? N 2 ? 1 L DG 2 1_555 K DC 11 1_555 L DC 3 1_555 K DG 10 1_555 -0.316 -0.558 3.314 -4.405 -1.095 43.242 -0.645 -0.007 3.341 -1.481 5.958 43.469 18 II_DG2DC3:DG10DC11_HH I 2 ? H 11 ? I 3 ? H 10 ? 1 L DC 3 1_555 K DG 10 1_555 L DG 4 1_555 K DC 9 1_555 -0.026 0.559 3.397 2.092 6.279 39.973 0.068 0.284 3.437 9.109 -3.036 40.495 19 II_DC3DG4:DC9DG10_HH I 3 ? H 10 ? I 4 ? H 9 ? 1 L DG 4 1_555 K DC 9 1_555 L DA 5 1_555 K DT 8 1_555 -0.431 -0.456 3.331 -0.305 0.106 30.190 -0.898 0.764 3.333 0.204 0.585 30.192 20 II_DG4DA5:DT8DC9_HH I 4 ? H 9 ? I 5 ? H 8 ? 1 L DA 5 1_555 K DT 8 1_555 L DT 6 1_555 K DA 7 1_555 -0.043 -1.142 3.129 3.273 4.704 31.501 -2.862 0.628 2.913 8.576 -5.968 32.005 21 II_DA5DT6:DA7DT8_HH I 5 ? H 8 ? I 6 ? H 7 ? 1 L DT 6 1_555 K DA 7 1_555 L DA 7 1_555 K DT 6 1_555 0.312 -0.548 3.451 -6.010 3.701 38.826 -1.266 -1.202 3.304 5.512 8.950 39.438 22 II_DT6DA7:DT6DA7_HH I 6 ? H 7 ? I 7 ? H 6 ? 1 L DA 7 1_555 K DT 6 1_555 L DT 8 1_555 K DA 5 1_555 -0.030 -0.622 3.147 2.388 0.400 25.159 -1.532 0.735 3.121 0.914 -5.467 25.274 23 II_DA7DT8:DA5DT6_HH I 7 ? H 6 ? I 8 ? H 5 ? 1 L DT 8 1_555 K DA 5 1_555 L DC 9 1_555 K DG 4 1_555 0.973 2.106 2.932 17.490 -0.756 43.108 2.736 0.177 3.053 -0.982 -22.717 46.370 24 II_DT8DC9:DG4DA5_HH I 8 ? H 5 ? I 9 ? H 4 ? 1 L DC 9 1_555 K DG 4 1_555 L DG 10 1_555 K DC 3 1_555 -1.200 1.835 4.859 -3.630 53.586 10.768 -4.820 0.844 2.864 79.320 5.373 54.698 25 II_DC9DG10:DC3DG4_HH I 9 ? H 4 ? I 10 ? H 3 ? 1 L DG 10 1_555 K DC 3 1_555 L DC 11 1_555 K DG 2 1_555 0.097 0.298 2.871 -4.862 -2.769 33.565 0.894 -0.844 2.797 -4.753 8.347 34.015 26 II_DG10DC11:DG2DC3_HH I 10 ? H 3 ? I 11 ? H 2 ? 1 L DC 11 1_555 K DG 2 1_555 I DG 2 1_555 J DC 11 1_555 -0.135 1.046 3.562 0.312 -0.273 -34.158 -1.734 -0.176 3.572 0.465 0.531 -34.161 27 IE_DC11DG2:DC11DG2_FH I 11 ? H 2 ? E 2 ? F 11 ? 1 I DG 2 1_555 J DC 11 1_555 I DC 3 1_555 J DG 10 1_555 -0.708 -0.535 3.576 -6.640 2.819 29.002 -1.688 -0.159 3.579 5.522 13.006 29.867 28 EE_DG2DC3:DG10DC11_FF E 2 ? F 11 ? E 3 ? F 10 ? 1 I DC 3 1_555 J DG 10 1_555 I DG 4 1_555 J DC 9 1_555 -0.089 0.167 2.989 5.626 6.921 36.495 -0.570 0.813 2.926 10.853 -8.822 37.533 29 EE_DC3DG4:DC9DG10_FF E 3 ? F 10 ? E 4 ? F 9 ? 1 I DG 4 1_555 J DC 9 1_555 I DA 5 1_555 J DT 8 1_555 0.671 -0.358 3.848 4.578 4.639 37.178 -1.262 -0.338 3.830 7.208 -7.113 37.725 30 EE_DG4DA5:DT8DC9_FF E 4 ? F 9 ? E 5 ? F 8 ? 1 I DA 5 1_555 J DT 8 1_555 I DT 6 1_555 J DA 7 1_555 -0.589 -0.309 3.003 -4.319 7.622 31.417 -1.772 0.359 2.903 13.744 7.787 32.586 31 EE_DA5DT6:DA7DT8_FF E 5 ? F 8 ? E 6 ? F 7 ? 1 I DT 6 1_555 J DA 7 1_555 I DA 7 1_555 J DT 6 1_555 0.322 0.113 3.434 2.643 10.871 29.862 -1.902 -0.074 3.289 20.224 -4.916 31.844 32 EE_DT6DA7:DT6DA7_FF E 6 ? F 7 ? E 7 ? F 6 ? 1 I DA 7 1_555 J DT 6 1_555 I DT 8 1_555 J DA 5 1_555 -0.636 -0.183 3.128 -2.891 13.827 18.013 -5.172 0.620 2.442 37.549 7.851 22.855 33 EE_DA7DT8:DA5DT6_FF E 7 ? F 6 ? E 8 ? F 5 ? 1 I DT 8 1_555 J DA 5 1_555 I DC 9 1_555 J DG 4 1_555 0.474 -0.434 3.750 -3.904 19.610 31.849 -3.537 -1.308 2.934 32.091 6.389 37.467 34 EE_DT8DC9:DG4DA5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 I DC 9 1_555 J DG 4 1_555 I DG 10 1_555 J DC 3 1_555 0.210 -1.387 3.701 5.626 12.558 30.344 -4.649 0.629 2.909 22.589 -10.121 33.251 35 EE_DC9DG10:DC3DG4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 I DG 10 1_555 J DC 3 1_555 I DC 11 1_555 J DG 2 1_555 0.776 -1.363 2.947 -1.089 -1.595 35.711 -2.012 -1.407 2.979 -2.599 1.774 35.761 36 EE_DG10DC11:DG2DC3_FF E 10 ? F 3 ? E 11 ? F 2 ? 1 I DC 11 1_555 J DG 2 1_555 N DG 2 1_555 M DG 10 1_555 0.043 -1.441 6.583 -2.198 2.860 103.488 -1.000 -0.091 6.552 1.821 1.399 103.533 37 EL_DC11DG2:DG10DG2_KF E 11 ? F 2 ? L 2 ? K 10 ? 1 N DG 2 1_555 M DG 10 1_555 N DG 4 1_555 M DC 9 1_555 -0.074 0.726 4.767 10.835 14.362 49.373 -0.591 1.151 4.685 16.572 -12.502 52.355 38 LL_DG2DG4:DC9DG10_KK L 2 ? K 10 ? L 4 ? K 9 ? 1 N DG 4 1_555 M DC 9 1_555 N DT 6 1_555 M DA 7 1_555 0.364 -0.852 6.183 10.891 20.756 55.625 -2.785 0.650 5.560 21.227 -11.138 59.996 39 LL_DG4DT6:DA7DC9_KK L 4 ? K 9 ? L 6 ? K 7 ? 1 N DT 6 1_555 M DA 7 1_555 N DA 7 1_555 M DT 6 1_555 -0.113 -0.145 3.497 6.482 -1.479 44.013 -0.046 0.788 3.451 -1.960 -8.591 44.487 40 LL_DT6DA7:DT6DA7_KK L 6 ? K 7 ? L 7 ? K 6 ? 1 N DA 7 1_555 M DT 6 1_555 N DC 9 1_555 M DG 4 1_555 -0.950 0.677 6.498 4.087 15.017 58.928 -0.786 1.335 6.414 14.982 -4.077 60.769 41 LL_DA7DC9:DG4DT6_KK L 7 ? K 6 ? L 9 ? K 4 ? 1 N DC 9 1_555 M DG 4 1_555 N DG 10 1_555 M DC 3 1_555 0.173 0.194 4.041 5.313 22.053 28.649 -3.601 0.666 3.342 37.947 -9.143 36.394 42 LL_DC9DG10:DC3DG4_KK L 9 ? K 4 ? L 10 ? K 3 ? 1 N DG 10 1_555 M DC 3 1_555 N DC 11 1_555 M DG 2 1_555 0.739 -0.299 2.589 -8.249 -4.003 16.192 0.697 -5.628 1.996 -12.946 26.681 18.593 43 LL_DG10DC11:DG2DC3_KK L 10 ? K 3 ? L 11 ? K 2 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QRV _pdbx_initial_refinement_model.details ? #