HEADER TRANSCRIPTION 24-JUN-10 3NNR TITLE CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR TITLE 2 (MAQU_3571) FROM MARINOBACTER AQUAEOLEI VT8 AT 2.49 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOBACTER AQUAEOLEI; SOURCE 3 ORGANISM_COMMON: MARINOBACTER HYDROCARBONOCLASTICUS (STRAIN DSM SOURCE 4 11845); SOURCE 5 ORGANISM_TAXID: 351348; SOURCE 6 STRAIN: ATCC 700491 / DSM 11845 / VT8; SOURCE 7 GENE: MAQU_3571; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TETR-FAMILY TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3NNR 1 REMARK SEQADV REVDAT 3 17-JUL-19 3NNR 1 REMARK LINK REVDAT 2 08-NOV-17 3NNR 1 REMARK REVDAT 1 28-JUL-10 3NNR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (MAQU_3571) FROM MARINOBACTER AQUAEOLEI VT8 AT 2.49 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1766 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1205 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2403 ; 1.644 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2920 ; 1.280 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 3.644 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;31.484 ;23.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;14.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1936 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 383 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1029 ; 1.792 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 405 ; 0.401 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 3.281 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 5.984 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 728 ; 8.366 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3488 -2.7976 11.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.4738 REMARK 3 T33: 0.0993 T12: 0.0668 REMARK 3 T13: -0.0824 T23: 0.0932 REMARK 3 L TENSOR REMARK 3 L11: 4.4727 L22: 4.3132 REMARK 3 L33: 2.1601 L12: 2.7366 REMARK 3 L13: -0.8207 L23: -1.0378 REMARK 3 S TENSOR REMARK 3 S11: -0.2304 S12: -0.0233 S13: 0.0627 REMARK 3 S21: 0.1709 S22: -0.0730 S23: -0.3304 REMARK 3 S31: -0.2514 S32: 0.1878 S33: 0.3033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5.SULFATE (SO4) FROM THE CRYSTALLIZATION SOLUTION HAS BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. 6.AN UNIDENTIFIED LIGAND (UNL) REMARK 3 HAS BEEN MODELED AT A PUTATIVE FUNCTIONAL SITE BASED ON REMARK 3 COMPARISON TO THE HOMOLOG STRUCTURE WITH PDB ID 3G1L. REMARK 4 REMARK 4 3NNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97934,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 29.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.18700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M LITHIUM SULFATE, 1.0500M REMARK 280 POTASSIUM SODIUM TARTRATE, 0.1M CHES PH 9.5, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.32500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.37250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.48750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.37250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.37250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.16250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.37250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.37250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 129.48750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.37250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.37250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 170 REMARK 465 ALA A 171 REMARK 465 GLU A 172 REMARK 465 GLU A 173 REMARK 465 PRO A 174 REMARK 465 ALA A 175 REMARK 465 SER A 176 REMARK 465 LEU A 177 REMARK 465 SER A 178 REMARK 465 THR A 215 REMARK 465 LEU A 216 REMARK 465 PRO A 217 REMARK 465 GLU A 218 REMARK 465 ALA A 219 REMARK 465 GLN A 220 REMARK 465 GLY A 221 REMARK 465 ILE A 222 REMARK 465 SER A 223 REMARK 465 GLY A 224 REMARK 465 VAL A 225 REMARK 465 GLU A 226 REMARK 465 ALA A 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 NE CZ NH1 NH2 REMARK 470 LYS A 166 CE NZ REMARK 470 LEU A 182 CG CD1 CD2 REMARK 470 ARG A 202 NE CZ NH1 NH2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 67 31.46 -94.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 403231 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NNR A 1 227 UNP A1U6M1 A1U6M1_MARAV 1 227 SEQADV 3NNR GLY A 0 UNP A1U6M1 EXPRESSION TAG SEQRES 1 A 228 GLY MSE THR MSE LYS THR ARG ASP LYS ILE LEU LEU SER SEQRES 2 A 228 SER LEU GLU LEU PHE ASN ASP LYS GLY GLU ARG ASN ILE SEQRES 3 A 228 THR THR ASN HIS ILE ALA ALA HIS LEU ALA ILE SER PRO SEQRES 4 A 228 GLY ASN LEU TYR TYR HIS PHE ARG ASN LYS SER ASP ILE SEQRES 5 A 228 ILE TYR GLU ILE PHE GLN GLU TYR GLU LYS LEU VAL ASP SEQRES 6 A 228 TYR TYR LEU ASP ILE PRO GLU ASP ARG PRO ILE THR LEU SEQRES 7 A 228 GLU ASP MSE THR PHE TYR LEU GLU SER VAL PHE ASP GLY SEQRES 8 A 228 LEU TRP SER TYR ARG PHE PHE HIS ARG ASP LEU GLU TYR SEQRES 9 A 228 LEU LEU ASP SER ASP PRO ARG LEU ARG GLN ASP TYR ARG SEQRES 10 A 228 GLU PHE THR ASN ARG CYS LEU ALA ALA ILE ASN ARG ILE SEQRES 11 A 228 PHE ALA LYS LEU ALA ASP ALA GLY ILE ILE GLN PRO GLN SEQRES 12 A 228 PRO GLU ASP LEU ARG SER ALA MSE SER LEU ASN VAL TRP SEQRES 13 A 228 LEU VAL ILE THR ASN TRP MSE ALA PHE LEU LYS THR ALA SEQRES 14 A 228 HIS ALA ALA GLU GLU PRO ALA SER LEU SER LEU THR GLU SEQRES 15 A 228 LEU LYS GLN GLY ILE TYR GLN VAL LEU THR LEU GLU VAL SEQRES 16 A 228 PRO TYR LEU THR PRO GLU TYR ARG GLU ARG VAL LEU ALA SEQRES 17 A 228 LEU ARG GLU LYS TYR ARG PRO THR LEU PRO GLU ALA GLN SEQRES 18 A 228 GLY ILE SER GLY VAL GLU ALA MODRES 3NNR MSE A 3 MET SELENOMETHIONINE MODRES 3NNR MSE A 80 MET SELENOMETHIONINE MODRES 3NNR MSE A 150 MET SELENOMETHIONINE MODRES 3NNR MSE A 162 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 80 8 HET MSE A 150 8 HET MSE A 162 13 HET UNL A 230 8 HET SO4 A 231 5 HET SO4 A 232 5 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *14(H2 O) HELIX 1 1 LYS A 4 GLY A 21 1 18 HELIX 2 2 GLU A 22 ILE A 25 5 4 HELIX 3 3 THR A 26 ALA A 35 1 10 HELIX 4 4 SER A 37 PHE A 45 1 9 HELIX 5 5 ASN A 47 LEU A 67 1 21 HELIX 6 6 THR A 76 TYR A 94 1 19 HELIX 7 7 TYR A 94 ASP A 100 1 7 HELIX 8 8 ASP A 100 ASP A 108 1 9 HELIX 9 9 ASP A 108 ALA A 136 1 29 HELIX 10 10 PRO A 143 ASN A 160 1 18 HELIX 11 11 ASN A 160 HIS A 169 1 10 HELIX 12 12 GLU A 181 LYS A 183 5 3 HELIX 13 13 GLN A 184 VAL A 194 1 11 HELIX 14 14 PRO A 195 LEU A 197 5 3 HELIX 15 15 THR A 198 LYS A 211 1 14 LINK C MSE A 3 N LYS A 4 1555 1555 1.35 LINK C ASP A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N THR A 81 1555 1555 1.33 LINK C ALA A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N SER A 151 1555 1555 1.34 LINK C TRP A 161 N MSE A 162 1555 1555 1.34 LINK C MSE A 162 N ALA A 163 1555 1555 1.34 SITE 1 AC1 2 TYR A 42 TYR A 65 SITE 1 AC2 2 ASN A 18 ARG A 95 CRYST1 58.745 58.745 172.650 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017023 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005792 0.00000 HETATM 1 N MSE A 3 1.360 -24.509 26.364 1.00112.98 N ANISOU 1 N MSE A 3 13921 15480 13526 568 -740 4603 N HETATM 2 CA MSE A 3 0.562 -23.401 25.737 1.00109.29 C ANISOU 2 CA MSE A 3 13642 15184 12697 573 -568 4054 C HETATM 3 C MSE A 3 -0.948 -23.702 25.857 1.00105.54 C ANISOU 3 C MSE A 3 13360 14764 11973 496 -337 3822 C HETATM 4 O MSE A 3 -1.364 -24.829 25.523 1.00107.25 O ANISOU 4 O MSE A 3 13507 14743 12499 559 -148 3868 O HETATM 5 CB MSE A 3 0.948 -23.243 24.258 1.00107.37 C ANISOU 5 CB MSE A 3 13250 14732 12813 789 -367 3752 C HETATM 6 CG MSE A 3 0.759 -21.826 23.744 1.00109.72 C ANISOU 6 CG MSE A 3 13671 15232 12786 785 -357 3358 C HETATM 7 SE MSE A 3 1.065 -21.563 21.820 0.75114.85 SE ANISOU 7 SE MSE A 3 14185 15674 13778 992 -88 2957 SE HETATM 8 CE MSE A 3 1.555 -19.643 21.857 1.00116.49 C ANISOU 8 CE MSE A 3 14490 16172 13598 933 -312 2783 C