HEADER SIGNALING PROTEIN 25-JUN-10 3NOU TITLE LIGHT-INDUCED INTERMEDIATE STRUCTURE L3 OF P. AERUGINOSA TITLE 2 BACTERIOPHYTOCHROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: PHOTOSENSORY CORE MODULE; COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PA01; SOURCE 5 GENE: BPHP, PA4117; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS INTERMEDIATE STRUCTURE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,Z.REN,K.MOFFAT REVDAT 4 06-SEP-23 3NOU 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3NOU 1 REMARK REVDAT 2 12-FEB-14 3NOU 1 CRYST1 REVDAT 1 28-NOV-12 3NOU 0 JRNL AUTH X.YANG,Z.REN,J.KUK,K.MOFFAT JRNL TITL TEMPERATURE-SCAN CRYOCRYSTALLOGRAPHY REVEALS REACTION JRNL TITL 2 INTERMEDIATES IN BACTERIOPHYTOCHROME. JRNL REF NATURE V. 479 428 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 22002602 JRNL DOI 10.1038/NATURE10506 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYNAMIX REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 132947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS CRYO-TRAPPED STRUCTURE WAS REMARK 3 DETERMINED BASED ON DIFFERENCE FOURIER METHOD. THE L1 (3NOP), REMARK 3 L2(3NOT) AND L3(3NOU) STRUCTURES WERE REFINED JOINTLY IN REAL REMARK 3 SPACE AGAINST A SET OF (FLIGHT-FDARK) DIFFERENCE MAPS REMARK 3 REPRESENTING MIXTURES OF THE L1, L2 AND L3 STRUCTURES IN REMARK 3 VARIABLE RELATIVE CONCENTRATIONS USING SOFTWARE DYNAMIX. DYNAMIX REMARK 3 IS A COLLECTION OF SOFTWARE TOOLS FOR ANALYZING DYNAMIC REMARK 3 CRYSTALLOGRAPHIC DATA DEVELOPED BY ZHONG REN. ALGORITHMS AND REMARK 3 METHODS ARE DESCRIBED IN REN, Z ET AL. RESOLUTION OF STRUCTURAL REMARK 3 HETEROGENEITY IN DYNAMIC AND STATIC CRYSTALLOGRAPHY. MANUSCRIPT REMARK 3 IN PREPARATION. REMARK 4 REMARK 4 3NOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER METHOD REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER METHOD USING CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3NHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 0.45M AMMONIUM REMARK 280 PHOSPHATE, 0.1M TRIS BUFFER, PH 7.7, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 218.04900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 218.04900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 77.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.48950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 77.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.48950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 218.04900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 77.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.48950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 218.04900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 77.19000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.48950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 PRO C 396 REMARK 465 GLN C 397 REMARK 465 PRO C 398 REMARK 465 SER C 399 REMARK 465 GLU C 400 REMARK 465 ASP C 401 REMARK 465 SER C 402 REMARK 465 PRO C 403 REMARK 465 ASP C 404 REMARK 465 GLY C 405 REMARK 465 ALA C 497 REMARK 465 LEU C 498 REMARK 465 GLU C 499 REMARK 465 HIS C 500 REMARK 465 HIS C 501 REMARK 465 HIS C 502 REMARK 465 HIS C 503 REMARK 465 HIS C 504 REMARK 465 HIS C 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 4 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 163 CB SER C 275 1.77 REMARK 500 O GLN C 188 N ARG C 189 1.79 REMARK 500 OH TYR C 203 CBA BLA C 900 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN C 188 C ARG C 189 N -0.325 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN C 188 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 GLN C 188 O - C - N ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 43 1.41 -63.22 REMARK 500 GLU C 62 41.32 36.42 REMARK 500 PRO C 81 97.59 -32.43 REMARK 500 VAL C 97 78.40 -113.60 REMARK 500 LYS C 103 -121.29 60.61 REMARK 500 ARG C 166 -169.41 -72.59 REMARK 500 ILE C 195 88.73 -150.36 REMARK 500 LEU C 235 33.44 -89.44 REMARK 500 MET C 260 117.57 -170.01 REMARK 500 ASP C 333 -6.95 78.24 REMARK 500 ARG C 367 28.64 80.42 REMARK 500 ASP C 407 -6.60 -143.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 62 GLN C 63 139.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN C 188 12.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA C 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NHQ RELATED DB: PDB REMARK 900 DARK-ADAPTED GROUND STATE REMARK 900 RELATED ID: 3NOP RELATED DB: PDB REMARK 900 LIGHT-INDUCED STRUCTURE L1 REMARK 900 RELATED ID: 3NOT RELATED DB: PDB REMARK 900 LIGHT-INDUCED STRUCTURE L2 DBREF 3NOU C 1 499 UNP Q9HWR3 BPHY_PSEAE 1 499 SEQADV 3NOU LEU C 498 UNP Q9HWR3 ALA 498 CONFLICT SEQADV 3NOU HIS C 500 UNP Q9HWR3 EXPRESSION TAG SEQADV 3NOU HIS C 501 UNP Q9HWR3 EXPRESSION TAG SEQADV 3NOU HIS C 502 UNP Q9HWR3 EXPRESSION TAG SEQADV 3NOU HIS C 503 UNP Q9HWR3 EXPRESSION TAG SEQADV 3NOU HIS C 504 UNP Q9HWR3 EXPRESSION TAG SEQADV 3NOU HIS C 505 UNP Q9HWR3 EXPRESSION TAG SEQRES 1 C 505 MET THR SER ILE THR PRO VAL THR LEU ALA ASN CYS GLU SEQRES 2 C 505 ASP GLU PRO ILE HIS VAL PRO GLY ALA ILE GLN PRO HIS SEQRES 3 C 505 GLY ALA LEU VAL THR LEU ARG ALA ASP GLY MET VAL LEU SEQRES 4 C 505 ALA ALA SER GLU ASN ILE GLN ALA LEU LEU GLY PHE VAL SEQRES 5 C 505 ALA SER PRO GLY SER TYR LEU THR GLN GLU GLN VAL GLY SEQRES 6 C 505 PRO GLU VAL LEU ARG MET LEU GLU GLU GLY LEU THR GLY SEQRES 7 C 505 ASN GLY PRO TRP SER ASN SER VAL GLU THR ARG ILE GLY SEQRES 8 C 505 GLU HIS LEU PHE ASP VAL ILE GLY HIS SER TYR LYS GLU SEQRES 9 C 505 VAL PHE TYR LEU GLU PHE GLU ILE ARG THR ALA ASP THR SEQRES 10 C 505 LEU SER ILE THR SER PHE THR LEU ASN ALA GLN ARG ILE SEQRES 11 C 505 ILE ALA GLN VAL GLN LEU HIS ASN ASP THR ALA SER LEU SEQRES 12 C 505 LEU SER ASN VAL THR ASP GLU LEU ARG ARG MET THR GLY SEQRES 13 C 505 TYR ASP ARG VAL MET ALA TYR ARG PHE ARG HIS ASP ASP SEQRES 14 C 505 SER GLY GLU VAL VAL ALA GLU SER ARG ARG GLU ASP LEU SEQRES 15 C 505 GLU SER TYR LEU GLY GLN ARG TYR PRO ALA SER ASP ILE SEQRES 16 C 505 PRO ALA GLN ALA ARG ARG LEU TYR ILE GLN ASN PRO ILE SEQRES 17 C 505 ARG LEU ILE ALA ASP VAL ALA TYR THR PRO MET ARG VAL SEQRES 18 C 505 PHE PRO ALA LEU ASN PRO GLU THR ASN GLU SER PHE ASP SEQRES 19 C 505 LEU SER TYR SER VAL LEU ARG SER VAL SER PRO ILE HIS SEQRES 20 C 505 CYS GLU TYR LEU THR ASN MET GLY VAL ARG ALA SER MET SEQRES 21 C 505 SER ILE SER ILE VAL VAL GLY GLY LYS LEU TRP GLY LEU SEQRES 22 C 505 PHE SER CYS HIS HIS MET SER PRO LYS LEU ILE PRO TYR SEQRES 23 C 505 PRO VAL ARG MET SER PHE GLN ILE PHE SER GLN VAL CYS SEQRES 24 C 505 SER ALA ILE VAL GLU ARG LEU GLU GLN GLY ARG ILE ALA SEQRES 25 C 505 GLU LEU LEU ARG VAL SER THR GLU ARG ARG LEU ALA LEU SEQRES 26 C 505 ALA ARG ARG ALA ARG ASP ALA ASP ASP LEU PHE GLY ALA SEQRES 27 C 505 LEU ALA HIS PRO ASP ASP GLY ILE ALA ALA LEU ILE PRO SEQRES 28 C 505 CYS ASP GLY ALA LEU VAL MET LEU GLY GLY ARG THR LEU SEQRES 29 C 505 SER ILE ARG GLY ASP PHE GLU ARG GLN ALA GLY ASN VAL SEQRES 30 C 505 LEU GLN ARG LEU GLN ARG ASP PRO GLU ARG ASP ILE TYR SEQRES 31 C 505 HIS THR ASP ASN TRP PRO GLN PRO SER GLU ASP SER PRO SEQRES 32 C 505 ASP GLY GLY ASP CYS CYS GLY VAL LEU ALA ILE ARG PHE SEQRES 33 C 505 HIS ARG GLN GLU SER GLY TRP ILE PHE TRP PHE ARG HIS SEQRES 34 C 505 GLU GLU VAL HIS ARG ILE ARG TRP GLY GLY LYS PRO GLU SEQRES 35 C 505 LYS LEU LEU THR ILE GLY PRO SER GLY PRO ARG LEU THR SEQRES 36 C 505 PRO ARG GLY SER PHE GLU ALA TRP GLU GLU VAL VAL ARG SEQRES 37 C 505 GLY HIS SER THR PRO TRP SER GLU THR ASP LEU ALA ILE SEQRES 38 C 505 ALA GLU LYS LEU ARG LEU ASP LEU MET GLU LEU CYS LEU SEQRES 39 C 505 ASN HIS ALA LEU GLU HIS HIS HIS HIS HIS HIS HET BLA C 900 43 HETNAM BLA BILIVERDINE IX ALPHA FORMUL 2 BLA C33 H34 N4 O6 HELIX 1 1 ASN C 11 GLU C 15 5 5 HELIX 2 2 ASN C 44 LEU C 49 1 6 HELIX 3 3 GLY C 65 THR C 77 1 13 HELIX 4 4 LEU C 118 ALA C 132 1 15 HELIX 5 5 GLN C 133 GLN C 135 5 3 HELIX 6 6 ASP C 139 GLY C 156 1 18 HELIX 7 7 PRO C 191 ILE C 195 5 5 HELIX 8 8 PRO C 196 ASN C 206 1 11 HELIX 9 9 SER C 244 GLY C 255 1 12 HELIX 10 10 PRO C 285 ASP C 333 1 49 HELIX 11 11 ASP C 334 ALA C 340 1 7 HELIX 12 12 GLY C 345 ILE C 350 1 6 HELIX 13 13 PHE C 370 LEU C 381 1 12 HELIX 14 14 GLN C 382 ASP C 384 5 3 HELIX 15 15 GLY C 451 LEU C 454 5 4 HELIX 16 16 THR C 455 ARG C 468 1 14 HELIX 17 17 SER C 475 HIS C 496 1 22 SHEET 1 A 7 ALA C 22 ILE C 23 0 SHEET 2 A 7 MET C 219 PHE C 222 -1 O MET C 219 N ILE C 23 SHEET 3 A 7 VAL C 38 SER C 42 -1 N ALA C 41 O PHE C 222 SHEET 4 A 7 GLY C 27 LEU C 32 -1 N THR C 31 O LEU C 39 SHEET 5 A 7 VAL C 105 ILE C 112 -1 O PHE C 106 N LEU C 32 SHEET 6 A 7 HIS C 93 TYR C 102 -1 N HIS C 100 O TYR C 107 SHEET 7 A 7 SER C 83 ILE C 90 -1 N THR C 88 O PHE C 95 SHEET 1 B 6 ARG C 189 TYR C 190 0 SHEET 2 B 6 GLY C 171 ARG C 178 -1 N GLY C 171 O TYR C 190 SHEET 3 B 6 ARG C 159 PHE C 165 -1 N ALA C 162 O VAL C 174 SHEET 4 B 6 LYS C 269 HIS C 278 -1 O HIS C 277 N ARG C 159 SHEET 5 B 6 ALA C 258 VAL C 266 -1 N ILE C 262 O PHE C 274 SHEET 6 B 6 ILE C 208 ILE C 211 -1 N ILE C 211 O SER C 259 SHEET 1 C 5 ARG C 362 ILE C 366 0 SHEET 2 C 5 GLY C 354 LEU C 359 -1 N VAL C 357 O LEU C 364 SHEET 3 C 5 GLY C 422 ARG C 428 -1 O TRP C 423 N MET C 358 SHEET 4 C 5 GLY C 410 HIS C 417 -1 N HIS C 417 O GLY C 422 SHEET 5 C 5 ILE C 389 THR C 392 -1 N TYR C 390 O ALA C 413 LINK SG CYS C 12 CBC BLA C 900 1555 1555 1.68 CISPEP 1 PHE C 222 PRO C 223 0 -0.43 SITE 1 AC1 18 CYS C 12 ILE C 17 TYR C 163 VAL C 173 SITE 2 AC1 18 GLN C 188 TYR C 190 SER C 193 ASP C 194 SITE 3 AC1 18 ILE C 195 PRO C 196 ALA C 199 TYR C 203 SITE 4 AC1 18 ARG C 209 HIS C 247 TYR C 250 SER C 261 SITE 5 AC1 18 SER C 275 ARG C 453 CRYST1 154.380 162.979 436.098 90.00 90.00 90.00 C 2 2 21 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002293 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.950180 -0.181630 -0.253320 49.36829 MTRIX2 2 0.102240 0.949330 -0.297170 -15.39839 MTRIX3 2 0.294460 0.256470 0.920610 34.53864 MTRIX1 3 -0.606380 -0.189510 -0.772260 -2.77281 MTRIX2 3 -0.169080 -0.918250 0.358100 16.08975 MTRIX3 3 -0.776990 0.347720 0.524760 -3.47570 MTRIX1 4 -0.821800 -0.238360 -0.517520 -56.34828 MTRIX2 4 -0.179920 -0.753250 0.632640 32.87178 MTRIX3 4 -0.540620 0.613020 0.576140 -30.58517 MTRIX1 5 0.153830 0.969490 -0.190880 -88.86876 MTRIX2 5 0.971320 -0.183820 -0.150840 121.50987 MTRIX3 5 -0.181320 -0.162200 -0.969960 77.39897 MTRIX1 6 -0.278190 -0.883930 0.375880 -61.45194 MTRIX2 6 -0.672770 -0.099990 -0.733070 64.60500 MTRIX3 6 0.685560 -0.456810 -0.566860 113.99367 MTRIX1 7 0.024870 0.994750 0.099320 -77.39406 MTRIX2 7 0.994380 -0.034840 0.099990 68.65884 MTRIX3 7 0.102920 0.096270 -0.990020 109.27385 MTRIX1 8 -0.256930 -0.690270 0.676400 -49.73023 MTRIX2 8 -0.864510 -0.148690 -0.480120 8.51341 MTRIX3 8 0.431980 -0.708110 -0.558540 136.80702