HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-10 3NPP TITLE CRYSTAL STRUCTURE OF A PFAM DUF1093 FAMILY PROTEIN (BSU39620) FROM TITLE 2 BACILLUS SUBTILIS AT 2.15 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFAM DUF1093 FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN YXEA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YXEA, BSU39620, HS74A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3NPP 1 REMARK SEQADV REVDAT 3 17-JUL-19 3NPP 1 REMARK LINK REVDAT 2 08-NOV-17 3NPP 1 REMARK REVDAT 1 28-JUL-10 3NPP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PFAM DUF1093 FAMILY PROTEIN JRNL TITL 2 (BSU39620) FROM BACILLUS SUBTILIS AT 2.15 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1515 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1041 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2037 ; 1.537 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2535 ; 1.172 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 6.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;37.313 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 254 ;13.633 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.024 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 198 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1630 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 297 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 869 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 359 ; 0.201 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1396 ; 1.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 646 ; 2.284 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 3.539 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 0 2 REMARK 3 1 B 0 B 0 2 REMARK 3 2 A 30 A 39 4 REMARK 3 2 B 30 B 39 4 REMARK 3 3 A 40 A 50 2 REMARK 3 3 B 40 B 50 2 REMARK 3 4 A 51 A 98 4 REMARK 3 4 B 51 B 98 4 REMARK 3 5 A 99 A 115 2 REMARK 3 5 B 99 B 115 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 166 ; 0.290 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 964 ; 0.770 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 166 ; 0.800 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 964 ; 1.300 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4880 16.0140 -5.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.2164 REMARK 3 T33: 0.0781 T12: 0.0314 REMARK 3 T13: 0.0136 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 3.6823 L22: 2.5537 REMARK 3 L33: 3.3943 L12: 2.4023 REMARK 3 L13: 2.4661 L23: 1.5187 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: 0.1531 S13: -0.2410 REMARK 3 S21: 0.1659 S22: -0.0389 S23: -0.2189 REMARK 3 S31: 0.3371 S32: 0.2714 S33: -0.1036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7660 12.4880 -10.9540 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.2066 REMARK 3 T33: 0.0753 T12: -0.0015 REMARK 3 T13: -0.0133 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.5923 L22: 1.9464 REMARK 3 L33: 1.5142 L12: 0.4584 REMARK 3 L13: -0.5083 L23: -0.9521 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.1013 S13: -0.2385 REMARK 3 S21: -0.2438 S22: 0.0269 S23: 0.0492 REMARK 3 S31: 0.2120 S32: -0.0195 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 37 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4100 10.5170 1.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: 0.3459 REMARK 3 T33: 0.2675 T12: -0.0511 REMARK 3 T13: -0.0589 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 3.8790 L22: 4.5249 REMARK 3 L33: 24.9731 L12: 4.7260 REMARK 3 L13: 3.6746 L23: -0.1553 REMARK 3 S TENSOR REMARK 3 S11: 0.6522 S12: -0.4826 S13: -0.1943 REMARK 3 S21: 0.7080 S22: -0.5855 S23: -0.3106 REMARK 3 S31: -0.0690 S32: 0.5298 S33: -0.0667 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5640 25.2980 16.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.4586 T22: 0.3878 REMARK 3 T33: 0.0780 T12: -0.0826 REMARK 3 T13: -0.0373 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.5270 L22: 1.5487 REMARK 3 L33: 9.3168 L12: -0.5020 REMARK 3 L13: -1.3336 L23: -0.2078 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: -0.3128 S13: 0.0492 REMARK 3 S21: 0.6006 S22: -0.0649 S23: -0.1261 REMARK 3 S31: 0.3470 S32: 0.0079 S33: -0.1126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 5. GLYCEROL (GOL) AND SULFATE (SO4) FROM REMARK 3 THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED REMARK 3 INTO THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3NPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 29.962 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.200000000M (NH4)2SO4, 0.1M BICINE PH REMARK 280 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -406.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 91.53500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.76750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 79.27164 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 210 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A 210 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 288 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 30 CZ NH1 NH2 REMARK 470 ARG A 81 NE CZ NH1 NH2 REMARK 470 LYS A 82 CD CE NZ REMARK 470 LYS A 93 CD CE NZ REMARK 470 ARG B 46 NH1 NH2 REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 69 CE NZ REMARK 470 LYS B 78 CE NZ REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 82 NZ REMARK 470 LYS B 113 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 87 CE LYS A 87 NZ 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 87 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 34 60.78 -106.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416515 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (30-115) WAS EXPRESSED WITH THE PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NPP A 30 115 UNP P54940 YXEA_BACSU 30 115 DBREF 3NPP B 30 115 UNP P54940 YXEA_BACSU 30 115 SEQADV 3NPP GLY A 0 UNP P54940 EXPRESSION TAG SEQADV 3NPP GLY B 0 UNP P54940 EXPRESSION TAG SEQRES 1 A 87 GLY ARG PHE ASN PRO PHE ILE HIS GLN GLN ASP VAL TYR SEQRES 2 A 87 VAL GLN ILE ASP ARG ASP GLY ARG HIS LEU SER PRO GLY SEQRES 3 A 87 GLY THR GLU TYR THR LEU ASP GLY TYR ASN ALA SER GLY SEQRES 4 A 87 LYS LYS GLU GLU VAL THR PHE PHE ALA GLY LYS GLU LEU SEQRES 5 A 87 ARG LYS ASN ALA TYR LEU LYS VAL LYS ALA LYS GLY LYS SEQRES 6 A 87 TYR VAL GLU THR TRP GLU GLU VAL LYS PHE GLU ASP MSE SEQRES 7 A 87 PRO ASP SER VAL GLN SER LYS LEU LYS SEQRES 1 B 87 GLY ARG PHE ASN PRO PHE ILE HIS GLN GLN ASP VAL TYR SEQRES 2 B 87 VAL GLN ILE ASP ARG ASP GLY ARG HIS LEU SER PRO GLY SEQRES 3 B 87 GLY THR GLU TYR THR LEU ASP GLY TYR ASN ALA SER GLY SEQRES 4 B 87 LYS LYS GLU GLU VAL THR PHE PHE ALA GLY LYS GLU LEU SEQRES 5 B 87 ARG LYS ASN ALA TYR LEU LYS VAL LYS ALA LYS GLY LYS SEQRES 6 B 87 TYR VAL GLU THR TRP GLU GLU VAL LYS PHE GLU ASP MSE SEQRES 7 B 87 PRO ASP SER VAL GLN SER LYS LEU LYS MODRES 3NPP MSE A 106 MET SELENOMETHIONINE MODRES 3NPP MSE B 106 MET SELENOMETHIONINE HET MSE A 106 8 HET MSE B 106 8 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 A 211 5 HET SO4 A 213 5 HET GOL B 201 6 HET GOL B 202 6 HET SO4 B 212 5 HET SO4 B 214 5 HET SO4 B 215 5 HET SO4 B 216 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 GOL 7(C3 H8 O3) FORMUL 8 SO4 9(O4 S 2-) FORMUL 19 HOH *117(H2 O) HELIX 1 1 LYS A 102 MSE A 106 5 5 HELIX 2 2 PRO A 107 LYS A 115 1 9 HELIX 3 3 LYS B 102 MSE B 106 5 5 HELIX 4 4 PRO B 107 LYS B 115 1 9 SHEET 1 A 4 ARG A 30 PHE A 31 0 SHEET 2 A 4 LYS B 69 ALA B 76 1 O GLU B 71 N PHE A 31 SHEET 3 A 4 GLY B 55 ASN B 64 -1 N TYR B 58 O PHE B 74 SHEET 4 A 4 ARG B 49 LEU B 51 -1 N ARG B 49 O GLU B 57 SHEET 1 B 6 ARG A 30 PHE A 31 0 SHEET 2 B 6 LYS B 69 ALA B 76 1 O GLU B 71 N PHE A 31 SHEET 3 B 6 GLY B 55 ASN B 64 -1 N TYR B 58 O PHE B 74 SHEET 4 B 6 GLN B 37 GLN B 43 -1 N TYR B 41 O TYR B 63 SHEET 5 B 6 TYR B 85 LYS B 91 -1 O VAL B 88 N VAL B 40 SHEET 6 B 6 TYR B 94 VAL B 101 -1 O THR B 97 N LYS B 89 SHEET 1 C 3 GLN A 37 GLN A 43 0 SHEET 2 C 3 TYR A 85 LYS A 91 -1 O ALA A 90 N GLN A 38 SHEET 3 C 3 TYR A 94 VAL A 101 -1 O GLU A 96 N LYS A 89 SHEET 1 D 4 ARG A 49 LEU A 51 0 SHEET 2 D 4 GLY A 55 TYR A 63 -1 O GLU A 57 N ARG A 49 SHEET 3 D 4 LYS A 69 ALA A 76 -1 O GLU A 70 N GLY A 62 SHEET 4 D 4 ARG B 30 PHE B 31 1 O PHE B 31 N GLU A 71 LINK C ASP A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N PRO A 107 1555 1555 1.34 LINK C ASP B 105 N MSE B 106 1555 1555 1.34 LINK C MSE B 106 N PRO B 107 1555 1555 1.36 CISPEP 1 SER A 52 PRO A 53 0 -2.95 CISPEP 2 SER B 52 PRO B 53 0 1.31 SITE 1 AC1 10 PRO A 33 ILE A 35 PHE A 74 PHE A 75 SITE 2 AC1 10 VAL A 95 GLU A 96 THR A 97 TRP A 98 SITE 3 AC1 10 HOH A 264 PRO B 33 SITE 1 AC2 4 LYS A 68 HOH A 236 HOH A 265 GLY B 0 SITE 1 AC3 6 LYS A 102 GLU A 104 SER A 109 HOH A 223 SITE 2 AC3 6 ASP B 108 LYS B 115 SITE 1 AC4 3 LYS A 78 ARG A 81 HOH A 237 SITE 1 AC5 4 GLN A 43 TYR A 85 HOH A 262 GOL B 202 SITE 1 AC6 3 GLY A 0 HOH A 315 HOH B 308 SITE 1 AC7 5 HIS A 50 SER A 52 PRO A 53 GLY A 54 SITE 2 AC7 5 HOH A 322 SITE 1 AC8 4 GLN A 37 LYS A 89 SO4 A 211 HOH A 235 SITE 1 AC9 4 LYS A 89 LYS A 91 SO4 A 210 HOH A 231 SITE 1 BC1 5 ARG A 49 GLU A 57 HOH A 257 LEU B 51 SITE 2 BC1 5 SER B 52 SITE 1 BC2 7 PRO A 33 GLN B 37 PHE B 75 LYS B 91 SITE 2 BC2 7 GLU B 96 TRP B 98 HOH B 324 SITE 1 BC3 3 TYR A 85 GOL A 207 TYR B 85 SITE 1 BC4 8 PHE A 34 HIS A 36 HOH A 219 HOH A 232 SITE 2 BC4 8 LYS B 93 TYR B 94 HOH B 238 HOH B 254 SITE 1 BC5 7 GLU A 71 HOH A 301 ARG B 30 HIS B 50 SITE 2 BC5 7 SER B 52 PRO B 53 GLY B 54 SITE 1 BC6 2 GLY B 0 ARG B 30 SITE 1 BC7 5 ARG A 49 HIS A 50 SER A 52 HOH A 299 SITE 2 BC7 5 ARG B 49 CRYST1 91.535 91.535 59.130 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010925 0.006307 0.000000 0.00000 SCALE2 0.000000 0.012615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016912 0.00000