HEADER TRANSFERASE 28-JUN-10 3NPR
TITLE CRYSTAL STRUCTURE OF THE C(30) CAROTENOID DEHYDROSQUALENE SYNTHASE
TITLE 2 FROM S. AUREUS COMPLEXED WITH PRESQUALENE DIPHOSPHATE (PSPP)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DEHYDROSQUALENE SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS;
SOURCE 3 ORGANISM_TAXID: 585147;
SOURCE 4 GENE: CRTM, SHAG_00345;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32
KEYWDS DEHYDROSQUALENE SYNTHASE, CRTM, PRESQUALENE DIPHOSPHATE, PSPP,
KEYWDS 2 VIRULENCE FACTOR, CAROTENOID, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.-Y.LIN,C.-I.LIU,Y.-L.LIU,K.WANG,Y.ZHANG,E.OLDFIELD
REVDAT 3 06-SEP-23 3NPR 1 REMARK SEQADV LINK
REVDAT 2 06-APR-11 3NPR 1 JRNL
REVDAT 1 22-DEC-10 3NPR 0
JRNL AUTH F.Y.LIN,C.I.LIU,Y.L.LIU,Y.ZHANG,K.WANG,W.Y.JENG,T.P.KO,
JRNL AUTH 2 R.CAO,A.H.WANG,E.OLDFIELD
JRNL TITL MECHANISM OF ACTION AND INHIBITION OF DEHYDROSQUALENE
JRNL TITL 2 SYNTHASE.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 21337 2010
JRNL REFN ISSN 0027-8424
JRNL PMID 21098670
JRNL DOI 10.1073/PNAS.1010907107
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0109
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1
REMARK 3 NUMBER OF REFLECTIONS : 21778
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.201
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.268
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1176
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1291
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.49
REMARK 3 BIN R VALUE (WORKING SET) : 0.2660
REMARK 3 BIN FREE R VALUE SET COUNT : 69
REMARK 3 BIN FREE R VALUE : 0.3580
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2392
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 41
REMARK 3 SOLVENT ATOMS : 203
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.04000
REMARK 3 B22 (A**2) : 1.04000
REMARK 3 B33 (A**2) : -1.56000
REMARK 3 B12 (A**2) : 0.52000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.337
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2487 ; 0.006 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3356 ; 1.159 ; 1.947
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 6.829 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;35.768 ;24.275
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;17.109 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.572 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.090 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1907 ; 0.015 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 1.596 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2291 ; 2.723 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1072 ; 4.137 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 6.183 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3NPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10.
REMARK 100 THE DEPOSITION ID IS D_1000060126.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-APR-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21778
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1
REMARK 200 DATA REDUNDANCY : 4.100
REMARK 200 R MERGE (I) : 0.06600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASES
REMARK 200 STARTING MODEL: PDB ENRY 2ZCO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.19
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE
REMARK 280 TETRAHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3,350, PH 7.4, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.11467
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.55733
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.55733
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.11467
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A -5
REMARK 465 ALA A -4
REMARK 465 ALA A -3
REMARK 465 ALA A -2
REMARK 465 ALA A -1
REMARK 465 ALA A 0
REMARK 465 HIS A 285
REMARK 465 ARG A 286
REMARK 465 ILE A 287
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP A 114 O HOH A 304 1.77
REMARK 500 OD1 ASP A 52 O HOH A 317 1.91
REMARK 500 O HOH A 339 O HOH A 398 2.12
REMARK 500 OD1 ASP A 52 O HOH A 397 2.17
REMARK 500 O HOH A 317 O HOH A 397 2.19
REMARK 500 OD1 ASN A 61 OH TYR A 112 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 82 -98.52 -95.84
REMARK 500 ALA A 134 -35.74 -136.78
REMARK 500 GLU A 193 70.23 55.29
REMARK 500 VAL A 204 -179.09 -68.33
REMARK 500 ASN A 205 -165.11 -160.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1002 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 18 O
REMARK 620 2 HOH A 430 O 158.7
REMARK 620 3 HOH A 467 O 117.7 83.6
REMARK 620 4 PS7 A1001 OAJ 99.1 80.4 87.7
REMARK 620 5 PS7 A1001 OAI 78.9 79.8 163.2 86.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 288 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 172 OD2
REMARK 620 2 HOH A 432 O 96.9
REMARK 620 3 HOH A 433 O 109.5 82.0
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PS7 A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 288
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2ZCP RELATED DB: PDB
REMARK 900 RELATED ID: 2ZCO RELATED DB: PDB
DBREF 3NPR A 1 287 UNP D2UVC8 D2UVC8_STAAU 1 287
SEQADV 3NPR ALA A -5 UNP D2UVC8 EXPRESSION TAG
SEQADV 3NPR ALA A -4 UNP D2UVC8 EXPRESSION TAG
SEQADV 3NPR ALA A -3 UNP D2UVC8 EXPRESSION TAG
SEQADV 3NPR ALA A -2 UNP D2UVC8 EXPRESSION TAG
SEQADV 3NPR ALA A -1 UNP D2UVC8 EXPRESSION TAG
SEQADV 3NPR ALA A 0 UNP D2UVC8 EXPRESSION TAG
SEQRES 1 A 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN
SEQRES 2 A 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS
SEQRES 3 A 293 SER PHE SER TYR ALA PHE ASP LEU LEU PRO GLU ASP GLN
SEQRES 4 A 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS
SEQRES 5 A 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE
SEQRES 6 A 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS
SEQRES 7 A 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG
SEQRES 8 A 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN
SEQRES 9 A 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL
SEQRES 10 A 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA
SEQRES 11 A 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL
SEQRES 12 A 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR
SEQRES 13 A 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER
SEQRES 14 A 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP
SEQRES 15 A 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU
SEQRES 16 A 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN
SEQRES 17 A 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR
SEQRES 18 A 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP
SEQRES 19 A 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE
SEQRES 20 A 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU
SEQRES 21 A 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE
SEQRES 22 A 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE
SEQRES 23 A 293 ASN SER LYS TYR HIS ARG ILE
HET PS7 A1001 39
HET MG A 288 1
HET MG A1002 1
HETNAM PS7 {(1R,2R,3R)-2-[(3E)-4,8-DIMETHYLNONA-3,7-DIEN-1-YL]-2-
HETNAM 2 PS7 METHYL-3-[(1E,5E)-2,6,10-TRIMETHYLUNDECA-1,5,9-TRIEN-
HETNAM 3 PS7 1-YL]CYCLOPROPYL}METHYL TRIHYDROGEN DIPHOSPHATE
HETNAM MG MAGNESIUM ION
FORMUL 2 PS7 C30 H52 O7 P2
FORMUL 3 MG 2(MG 2+)
FORMUL 5 HOH *203(H2 O)
HELIX 1 1 THR A 2 SER A 19 1 18
HELIX 2 2 SER A 19 ASP A 27 1 9
HELIX 3 3 PRO A 30 SER A 50 1 21
HELIX 4 4 ILE A 51 TYR A 54 5 4
HELIX 5 5 ILE A 57 TYR A 73 1 17
HELIX 6 6 ASP A 83 GLN A 95 1 13
HELIX 7 7 ALA A 100 GLN A 115 1 16
HELIX 8 8 THR A 122 ALA A 134 1 13
HELIX 9 9 ALA A 134 SER A 146 1 13
HELIX 10 10 THR A 150 ASP A 172 1 23
HELIX 11 11 ASP A 172 ASN A 179 1 8
HELIX 12 12 SER A 185 GLU A 193 1 9
HELIX 13 13 ASP A 195 GLY A 203 1 9
HELIX 14 14 ASN A 205 ASP A 228 1 24
HELIX 15 15 GLN A 229 PHE A 233 5 5
HELIX 16 16 GLU A 236 ALA A 258 1 23
HELIX 17 17 GLU A 269 TYR A 284 1 16
LINK O HIS A 18 MG MG A1002 1555 1555 2.37
LINK OD2 ASP A 172 MG MG A 288 1555 1555 2.37
LINK MG MG A 288 O HOH A 432 1555 1555 2.46
LINK MG MG A 288 O HOH A 433 1555 1555 2.64
LINK O HOH A 430 MG MG A1002 1555 1555 2.51
LINK O HOH A 467 MG MG A1002 1555 1555 1.81
LINK OAJ PS7 A1001 MG MG A1002 1555 1555 2.43
LINK OAI PS7 A1001 MG MG A1002 1555 1555 2.54
SITE 1 AC1 20 HIS A 18 SER A 19 PHE A 22 TYR A 41
SITE 2 AC1 20 CYS A 44 ARG A 45 VAL A 133 VAL A 137
SITE 3 AC1 20 ALA A 157 LEU A 160 ASN A 168 ARG A 171
SITE 4 AC1 20 TYR A 248 ARG A 265 HOH A 331 HOH A 430
SITE 5 AC1 20 HOH A 434 HOH A 438 HOH A 467 MG A1002
SITE 1 AC2 4 ASN A 168 ASP A 172 HOH A 432 HOH A 433
SITE 1 AC3 5 HIS A 18 ARG A 265 HOH A 430 HOH A 467
SITE 2 AC3 5 PS7 A1001
CRYST1 80.571 80.571 91.672 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012411 0.007166 0.000000 0.00000
SCALE2 0.000000 0.014331 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010908 0.00000