data_3NQJ # _entry.id 3NQJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NQJ pdb_00003nqj 10.2210/pdb3nqj/pdb RCSB RCSB060154 ? ? WWPDB D_1000060154 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3NQU _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NQJ _pdbx_database_status.recvd_initial_deposition_date 2010-06-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sekulic, N.' 1 'Black, B.E.' 2 # _citation.id primary _citation.title 'The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres.' _citation.journal_abbrev Nature _citation.journal_volume 467 _citation.page_first 347 _citation.page_last 351 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20739937 _citation.pdbx_database_id_DOI 10.1038/nature09323 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sekulic, N.' 1 ? primary 'Bassett, E.A.' 2 ? primary 'Rogers, D.J.' 3 ? primary 'Black, B.E.' 4 ? # _cell.entry_id 3NQJ _cell.length_a 62.869 _cell.length_b 62.869 _cell.length_c 159.512 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NQJ _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone H3-like centromeric protein A' 9379.032 1 ? ? 'UNP residues 60-140' ? 2 polymer man 'Histone H4' 9540.251 1 ? ? 'UNP residues 21-103' ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 4 ? ? ? ? 4 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Centromere protein A, CENP-A, Centromere autoantigen A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEG LG ; ;MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEG LG ; A ? 2 'polypeptide(L)' no no ;MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY GFGG ; ;MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY GFGG ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 LEU n 1 4 ILE n 1 5 ARG n 1 6 LYS n 1 7 LEU n 1 8 PRO n 1 9 PHE n 1 10 SER n 1 11 ARG n 1 12 LEU n 1 13 ALA n 1 14 ARG n 1 15 GLU n 1 16 ILE n 1 17 CYS n 1 18 VAL n 1 19 LYS n 1 20 PHE n 1 21 THR n 1 22 ARG n 1 23 GLY n 1 24 VAL n 1 25 ASP n 1 26 PHE n 1 27 ASN n 1 28 TRP n 1 29 GLN n 1 30 ALA n 1 31 GLN n 1 32 ALA n 1 33 LEU n 1 34 LEU n 1 35 ALA n 1 36 LEU n 1 37 GLN n 1 38 GLU n 1 39 ALA n 1 40 ALA n 1 41 GLU n 1 42 ALA n 1 43 PHE n 1 44 LEU n 1 45 VAL n 1 46 HIS n 1 47 LEU n 1 48 PHE n 1 49 GLU n 1 50 ASP n 1 51 ALA n 1 52 TYR n 1 53 LEU n 1 54 LEU n 1 55 THR n 1 56 LEU n 1 57 HIS n 1 58 ALA n 1 59 GLY n 1 60 ARG n 1 61 VAL n 1 62 THR n 1 63 LEU n 1 64 PHE n 1 65 PRO n 1 66 LYS n 1 67 ASP n 1 68 VAL n 1 69 GLN n 1 70 LEU n 1 71 ALA n 1 72 ARG n 1 73 ARG n 1 74 ILE n 1 75 ARG n 1 76 GLY n 1 77 LEU n 1 78 GLU n 1 79 GLU n 1 80 GLY n 1 81 LEU n 1 82 GLY n 2 1 MET n 2 2 LYS n 2 3 VAL n 2 4 LEU n 2 5 ARG n 2 6 ASP n 2 7 ASN n 2 8 ILE n 2 9 GLN n 2 10 GLY n 2 11 ILE n 2 12 THR n 2 13 LYS n 2 14 PRO n 2 15 ALA n 2 16 ILE n 2 17 ARG n 2 18 ARG n 2 19 LEU n 2 20 ALA n 2 21 ARG n 2 22 ARG n 2 23 GLY n 2 24 GLY n 2 25 VAL n 2 26 LYS n 2 27 ARG n 2 28 ILE n 2 29 SER n 2 30 GLY n 2 31 LEU n 2 32 ILE n 2 33 TYR n 2 34 GLU n 2 35 GLU n 2 36 THR n 2 37 ARG n 2 38 GLY n 2 39 VAL n 2 40 LEU n 2 41 LYS n 2 42 VAL n 2 43 PHE n 2 44 LEU n 2 45 GLU n 2 46 ASN n 2 47 VAL n 2 48 ILE n 2 49 ARG n 2 50 ASP n 2 51 ALA n 2 52 VAL n 2 53 THR n 2 54 TYR n 2 55 THR n 2 56 GLU n 2 57 HIS n 2 58 ALA n 2 59 LYS n 2 60 ARG n 2 61 LYS n 2 62 THR n 2 63 VAL n 2 64 THR n 2 65 ALA n 2 66 MET n 2 67 ASP n 2 68 VAL n 2 69 VAL n 2 70 TYR n 2 71 ALA n 2 72 LEU n 2 73 LYS n 2 74 ARG n 2 75 GLN n 2 76 GLY n 2 77 ARG n 2 78 THR n 2 79 LEU n 2 80 TYR n 2 81 GLY n 2 82 PHE n 2 83 GLY n 2 84 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? CENPA ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? Human ? 'HIST1H4A, H4/A, H4FA' ? ? ? ? ? ? 'Homo Sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CENPA_HUMAN P49450 1 ;LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEEGL G ; 60 ? 2 UNP H4_HUMAN P62805 2 ;KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG FGG ; 21 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NQJ A 2 ? 82 ? P49450 60 ? 140 ? 60 140 2 2 3NQJ B 2 ? 84 ? P62805 21 ? 103 ? 20 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NQJ MET A 1 ? UNP P49450 ? ? insertion 59 1 2 3NQJ MET B 1 ? UNP P62805 ? ? insertion 19 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NQJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.17 M ammonium sulfate, 0.085 M sodium cacodylate (pH 6.5), 25.5% PEG-8000, 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 193 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 3NQJ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 54.45 _reflns.d_resolution_high 2.08 _reflns.number_obs 11585 _reflns.number_all 11876 _reflns.percent_possible_obs 97.56 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 23.39 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.22 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 87.7 _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.pdbx_Rsym_value 0.535 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 7.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1825 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NQJ _refine.ls_number_reflns_obs 10961 _refine.ls_number_reflns_all 11000 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.65 _refine.ls_R_factor_obs 0.18249 _refine.ls_R_factor_all 0.18249 _refine.ls_R_factor_R_work 0.17970 _refine.ls_R_factor_R_free 0.24141 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 550 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 38.104 _refine.aniso_B[1][1] -1.63 _refine.aniso_B[2][2] -1.63 _refine.aniso_B[3][3] 2.44 _refine.aniso_B[1][2] -0.81 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3NQU' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.179 _refine.overall_SU_ML 0.133 _refine.overall_SU_B 11.336 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1318 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1204 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.329 1.978 ? 1626 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.339 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.232 20.741 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.489 15.000 ? 218 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.462 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 188 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 872 'X-RAY DIFFRACTION' ? r_mcbond_it 0.636 1.500 ? 721 'X-RAY DIFFRACTION' ? r_mcangle_it 1.196 2.000 ? 1157 'X-RAY DIFFRACTION' ? r_scbond_it 2.237 3.000 ? 483 'X-RAY DIFFRACTION' ? r_scangle_it 3.825 4.500 ? 468 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 771 _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.313 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NQJ _struct.title 'Crystal structure of (CENP-A/H4)2 heterotetramer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NQJ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'alpha helix, histone fold, centromere, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 5 ? ARG A 22 ? ARG A 63 ARG A 80 1 ? 18 HELX_P HELX_P2 2 GLN A 29 ? ALA A 58 ? GLN A 87 ALA A 116 1 ? 30 HELX_P HELX_P3 3 PHE A 64 ? GLY A 76 ? PHE A 122 GLY A 134 1 ? 13 HELX_P HELX_P4 4 ASN B 7 ? ILE B 11 ? ASN B 25 ILE B 29 5 ? 5 HELX_P HELX_P5 5 THR B 12 ? GLY B 23 ? THR B 30 GLY B 41 1 ? 12 HELX_P HELX_P6 6 LEU B 31 ? ALA B 58 ? LEU B 49 ALA B 76 1 ? 28 HELX_P HELX_P7 7 THR B 64 ? LYS B 73 ? THR B 82 LYS B 91 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 6 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 24 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 ASN _struct_mon_prot_cis.pdbx_label_seq_id_2 7 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASN _struct_mon_prot_cis.pdbx_auth_seq_id_2 25 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 28.42 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 27 ? TRP A 28 ? ASN A 85 TRP A 86 A 2 THR B 62 ? VAL B 63 ? THR B 80 VAL B 81 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ASN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 27 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 85 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 63 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 81 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 4 ? 7 'BINDING SITE FOR RESIDUE PO4 A 4' AC2 Software B PO4 1 ? 4 'BINDING SITE FOR RESIDUE PO4 B 1' AC3 Software B PO4 2 ? 4 'BINDING SITE FOR RESIDUE PO4 B 2' AC4 Software B PO4 3 ? 4 'BINDING SITE FOR RESIDUE PO4 B 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH G . ? HOH A 14 . ? 1_555 ? 2 AC1 7 ARG A 5 ? ARG A 63 . ? 1_555 ? 3 AC1 7 ARG A 5 ? ARG A 63 . ? 10_555 ? 4 AC1 7 LYS A 6 ? LYS A 64 . ? 1_555 ? 5 AC1 7 LYS A 6 ? LYS A 64 . ? 10_555 ? 6 AC1 7 HOH G . ? HOH A 165 . ? 10_555 ? 7 AC1 7 HOH G . ? HOH A 165 . ? 1_555 ? 8 AC2 4 PRO B 14 ? PRO B 32 . ? 1_555 ? 9 AC2 4 ARG B 17 ? ARG B 35 . ? 1_555 ? 10 AC2 4 ARG B 18 ? ARG B 36 . ? 1_555 ? 11 AC2 4 ARG B 21 ? ARG B 39 . ? 1_555 ? 12 AC3 4 HOH G . ? HOH A 144 . ? 8_565 ? 13 AC3 4 PO4 F . ? PO4 B 3 . ? 1_555 ? 14 AC3 4 LYS B 13 ? LYS B 31 . ? 1_555 ? 15 AC3 4 TYR B 33 ? TYR B 51 . ? 1_555 ? 16 AC4 4 PO4 E . ? PO4 B 2 . ? 1_555 ? 17 AC4 4 LYS B 13 ? LYS B 31 . ? 1_555 ? 18 AC4 4 PRO B 14 ? PRO B 32 . ? 1_555 ? 19 AC4 4 ARG B 17 ? ARG B 35 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NQJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NQJ _atom_sites.fract_transf_matrix[1][1] 0.015906 _atom_sites.fract_transf_matrix[1][2] 0.009183 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018367 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006269 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 59 59 MET MET A . n A 1 2 LEU 2 60 60 LEU LEU A . n A 1 3 LEU 3 61 61 LEU LEU A . n A 1 4 ILE 4 62 62 ILE ILE A . n A 1 5 ARG 5 63 63 ARG ARG A . n A 1 6 LYS 6 64 64 LYS LYS A . n A 1 7 LEU 7 65 65 LEU LEU A . n A 1 8 PRO 8 66 66 PRO PRO A . n A 1 9 PHE 9 67 67 PHE PHE A . n A 1 10 SER 10 68 68 SER SER A . n A 1 11 ARG 11 69 69 ARG ARG A . n A 1 12 LEU 12 70 70 LEU LEU A . n A 1 13 ALA 13 71 71 ALA ALA A . n A 1 14 ARG 14 72 72 ARG ARG A . n A 1 15 GLU 15 73 73 GLU GLU A . n A 1 16 ILE 16 74 74 ILE ILE A . n A 1 17 CYS 17 75 75 CYS CYS A . n A 1 18 VAL 18 76 76 VAL VAL A . n A 1 19 LYS 19 77 77 LYS LYS A . n A 1 20 PHE 20 78 78 PHE PHE A . n A 1 21 THR 21 79 79 THR THR A . n A 1 22 ARG 22 80 80 ARG ARG A . n A 1 23 GLY 23 81 81 GLY GLY A . n A 1 24 VAL 24 82 82 VAL VAL A . n A 1 25 ASP 25 83 83 ASP ASP A . n A 1 26 PHE 26 84 84 PHE PHE A . n A 1 27 ASN 27 85 85 ASN ASN A . n A 1 28 TRP 28 86 86 TRP TRP A . n A 1 29 GLN 29 87 87 GLN GLN A . n A 1 30 ALA 30 88 88 ALA ALA A . n A 1 31 GLN 31 89 89 GLN GLN A . n A 1 32 ALA 32 90 90 ALA ALA A . n A 1 33 LEU 33 91 91 LEU LEU A . n A 1 34 LEU 34 92 92 LEU LEU A . n A 1 35 ALA 35 93 93 ALA ALA A . n A 1 36 LEU 36 94 94 LEU LEU A . n A 1 37 GLN 37 95 95 GLN GLN A . n A 1 38 GLU 38 96 96 GLU GLU A . n A 1 39 ALA 39 97 97 ALA ALA A . n A 1 40 ALA 40 98 98 ALA ALA A . n A 1 41 GLU 41 99 99 GLU GLU A . n A 1 42 ALA 42 100 100 ALA ALA A . n A 1 43 PHE 43 101 101 PHE PHE A . n A 1 44 LEU 44 102 102 LEU LEU A . n A 1 45 VAL 45 103 103 VAL VAL A . n A 1 46 HIS 46 104 104 HIS HIS A . n A 1 47 LEU 47 105 105 LEU LEU A . n A 1 48 PHE 48 106 106 PHE PHE A . n A 1 49 GLU 49 107 107 GLU GLU A . n A 1 50 ASP 50 108 108 ASP ASP A . n A 1 51 ALA 51 109 109 ALA ALA A . n A 1 52 TYR 52 110 110 TYR TYR A . n A 1 53 LEU 53 111 111 LEU LEU A . n A 1 54 LEU 54 112 112 LEU LEU A . n A 1 55 THR 55 113 113 THR THR A . n A 1 56 LEU 56 114 114 LEU LEU A . n A 1 57 HIS 57 115 115 HIS HIS A . n A 1 58 ALA 58 116 116 ALA ALA A . n A 1 59 GLY 59 117 117 GLY GLY A . n A 1 60 ARG 60 118 118 ARG ARG A . n A 1 61 VAL 61 119 119 VAL VAL A . n A 1 62 THR 62 120 120 THR THR A . n A 1 63 LEU 63 121 121 LEU LEU A . n A 1 64 PHE 64 122 122 PHE PHE A . n A 1 65 PRO 65 123 123 PRO PRO A . n A 1 66 LYS 66 124 124 LYS LYS A . n A 1 67 ASP 67 125 125 ASP ASP A . n A 1 68 VAL 68 126 126 VAL VAL A . n A 1 69 GLN 69 127 127 GLN GLN A . n A 1 70 LEU 70 128 128 LEU LEU A . n A 1 71 ALA 71 129 129 ALA ALA A . n A 1 72 ARG 72 130 130 ARG ARG A . n A 1 73 ARG 73 131 131 ARG ARG A . n A 1 74 ILE 74 132 132 ILE ILE A . n A 1 75 ARG 75 133 133 ARG ARG A . n A 1 76 GLY 76 134 134 GLY GLY A . n A 1 77 LEU 77 135 ? ? ? A . n A 1 78 GLU 78 136 ? ? ? A . n A 1 79 GLU 79 137 ? ? ? A . n A 1 80 GLY 80 138 ? ? ? A . n A 1 81 LEU 81 139 ? ? ? A . n A 1 82 GLY 82 140 ? ? ? A . n B 2 1 MET 1 19 ? ? ? B . n B 2 2 LYS 2 20 ? ? ? B . n B 2 3 VAL 3 21 ? ? ? B . n B 2 4 LEU 4 22 ? ? ? B . n B 2 5 ARG 5 23 ? ? ? B . n B 2 6 ASP 6 24 24 ASP ALA B . n B 2 7 ASN 7 25 25 ASN ASN B . n B 2 8 ILE 8 26 26 ILE ILE B . n B 2 9 GLN 9 27 27 GLN GLN B . n B 2 10 GLY 10 28 28 GLY GLY B . n B 2 11 ILE 11 29 29 ILE ILE B . n B 2 12 THR 12 30 30 THR THR B . n B 2 13 LYS 13 31 31 LYS LYS B . n B 2 14 PRO 14 32 32 PRO PRO B . n B 2 15 ALA 15 33 33 ALA ALA B . n B 2 16 ILE 16 34 34 ILE ILE B . n B 2 17 ARG 17 35 35 ARG ARG B . n B 2 18 ARG 18 36 36 ARG ARG B . n B 2 19 LEU 19 37 37 LEU LEU B . n B 2 20 ALA 20 38 38 ALA ALA B . n B 2 21 ARG 21 39 39 ARG ARG B . n B 2 22 ARG 22 40 40 ARG ARG B . n B 2 23 GLY 23 41 41 GLY GLY B . n B 2 24 GLY 24 42 42 GLY GLY B . n B 2 25 VAL 25 43 43 VAL VAL B . n B 2 26 LYS 26 44 44 LYS LYS B . n B 2 27 ARG 27 45 45 ARG ARG B . n B 2 28 ILE 28 46 46 ILE ILE B . n B 2 29 SER 29 47 47 SER SER B . n B 2 30 GLY 30 48 48 GLY GLY B . n B 2 31 LEU 31 49 49 LEU LEU B . n B 2 32 ILE 32 50 50 ILE ILE B . n B 2 33 TYR 33 51 51 TYR TYR B . n B 2 34 GLU 34 52 52 GLU GLU B . n B 2 35 GLU 35 53 53 GLU GLU B . n B 2 36 THR 36 54 54 THR THR B . n B 2 37 ARG 37 55 55 ARG ARG B . n B 2 38 GLY 38 56 56 GLY GLY B . n B 2 39 VAL 39 57 57 VAL VAL B . n B 2 40 LEU 40 58 58 LEU LEU B . n B 2 41 LYS 41 59 59 LYS LYS B . n B 2 42 VAL 42 60 60 VAL VAL B . n B 2 43 PHE 43 61 61 PHE PHE B . n B 2 44 LEU 44 62 62 LEU LEU B . n B 2 45 GLU 45 63 63 GLU GLU B . n B 2 46 ASN 46 64 64 ASN ASN B . n B 2 47 VAL 47 65 65 VAL VAL B . n B 2 48 ILE 48 66 66 ILE ILE B . n B 2 49 ARG 49 67 67 ARG ARG B . n B 2 50 ASP 50 68 68 ASP ASP B . n B 2 51 ALA 51 69 69 ALA ALA B . n B 2 52 VAL 52 70 70 VAL VAL B . n B 2 53 THR 53 71 71 THR THR B . n B 2 54 TYR 54 72 72 TYR TYR B . n B 2 55 THR 55 73 73 THR THR B . n B 2 56 GLU 56 74 74 GLU GLU B . n B 2 57 HIS 57 75 75 HIS HIS B . n B 2 58 ALA 58 76 76 ALA ALA B . n B 2 59 LYS 59 77 77 LYS LYS B . n B 2 60 ARG 60 78 78 ARG ARG B . n B 2 61 LYS 61 79 79 LYS LYS B . n B 2 62 THR 62 80 80 THR THR B . n B 2 63 VAL 63 81 81 VAL VAL B . n B 2 64 THR 64 82 82 THR THR B . n B 2 65 ALA 65 83 83 ALA ALA B . n B 2 66 MET 66 84 84 MET MET B . n B 2 67 ASP 67 85 85 ASP ASP B . n B 2 68 VAL 68 86 86 VAL VAL B . n B 2 69 VAL 69 87 87 VAL VAL B . n B 2 70 TYR 70 88 88 TYR TYR B . n B 2 71 ALA 71 89 89 ALA ALA B . n B 2 72 LEU 72 90 90 LEU LEU B . n B 2 73 LYS 73 91 91 LYS LYS B . n B 2 74 ARG 74 92 92 ARG ARG B . n B 2 75 GLN 75 93 ? ? ? B . n B 2 76 GLY 76 94 ? ? ? B . n B 2 77 ARG 77 95 ? ? ? B . n B 2 78 THR 78 96 ? ? ? B . n B 2 79 LEU 79 97 ? ? ? B . n B 2 80 TYR 80 98 ? ? ? B . n B 2 81 GLY 81 99 ? ? ? B . n B 2 82 PHE 82 100 ? ? ? B . n B 2 83 GLY 83 101 ? ? ? B . n B 2 84 GLY 84 102 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 1 4 4 PO4 PO4 A . D 3 PO4 1 1 1 PO4 PO4 B . E 3 PO4 1 2 2 PO4 PO4 B . F 3 PO4 1 3 3 PO4 PO4 B . G 4 HOH 1 1 1 HOH HOH A . G 4 HOH 2 2 2 HOH HOH A . G 4 HOH 3 5 5 HOH HOH A . G 4 HOH 4 6 6 HOH HOH A . G 4 HOH 5 8 8 HOH HOH A . G 4 HOH 6 9 9 HOH HOH A . G 4 HOH 7 10 10 HOH HOH A . G 4 HOH 8 13 13 HOH HOH A . G 4 HOH 9 14 14 HOH HOH A . G 4 HOH 10 17 17 HOH HOH A . G 4 HOH 11 22 22 HOH HOH A . G 4 HOH 12 27 27 HOH HOH A . G 4 HOH 13 28 28 HOH HOH A . G 4 HOH 14 29 29 HOH HOH A . G 4 HOH 15 30 30 HOH HOH A . G 4 HOH 16 31 31 HOH HOH A . G 4 HOH 17 36 36 HOH HOH A . G 4 HOH 18 37 37 HOH HOH A . G 4 HOH 19 38 38 HOH HOH A . G 4 HOH 20 41 41 HOH HOH A . G 4 HOH 21 42 42 HOH HOH A . G 4 HOH 22 43 43 HOH HOH A . G 4 HOH 23 45 45 HOH HOH A . G 4 HOH 24 46 46 HOH HOH A . G 4 HOH 25 47 47 HOH HOH A . G 4 HOH 26 48 48 HOH HOH A . G 4 HOH 27 49 49 HOH HOH A . G 4 HOH 28 50 50 HOH HOH A . G 4 HOH 29 52 52 HOH HOH A . G 4 HOH 30 53 53 HOH HOH A . G 4 HOH 31 54 54 HOH HOH A . G 4 HOH 32 56 56 HOH HOH A . G 4 HOH 33 57 57 HOH HOH A . G 4 HOH 34 58 58 HOH HOH A . G 4 HOH 35 141 60 HOH HOH A . G 4 HOH 36 142 61 HOH HOH A . G 4 HOH 37 143 63 HOH HOH A . G 4 HOH 38 144 65 HOH HOH A . G 4 HOH 39 145 66 HOH HOH A . G 4 HOH 40 146 67 HOH HOH A . G 4 HOH 41 147 68 HOH HOH A . G 4 HOH 42 148 69 HOH HOH A . G 4 HOH 43 149 71 HOH HOH A . G 4 HOH 44 150 72 HOH HOH A . G 4 HOH 45 151 73 HOH HOH A . G 4 HOH 46 152 74 HOH HOH A . G 4 HOH 47 153 76 HOH HOH A . G 4 HOH 48 154 81 HOH HOH A . G 4 HOH 49 155 82 HOH HOH A . G 4 HOH 50 156 83 HOH HOH A . G 4 HOH 51 157 84 HOH HOH A . G 4 HOH 52 158 85 HOH HOH A . G 4 HOH 53 159 88 HOH HOH A . G 4 HOH 54 160 95 HOH HOH A . G 4 HOH 55 161 96 HOH HOH A . G 4 HOH 56 162 101 HOH HOH A . G 4 HOH 57 163 102 HOH HOH A . G 4 HOH 58 164 104 HOH HOH A . G 4 HOH 59 165 106 HOH HOH A . G 4 HOH 60 166 107 HOH HOH A . G 4 HOH 61 167 110 HOH HOH A . G 4 HOH 62 168 111 HOH HOH A . G 4 HOH 63 169 112 HOH HOH A . G 4 HOH 64 170 113 HOH HOH A . G 4 HOH 65 171 114 HOH HOH A . G 4 HOH 66 172 116 HOH HOH A . G 4 HOH 67 173 117 HOH HOH A . G 4 HOH 68 174 118 HOH HOH A . G 4 HOH 69 175 123 HOH HOH A . G 4 HOH 70 176 124 HOH HOH A . G 4 HOH 71 177 126 HOH HOH A . G 4 HOH 72 178 128 HOH HOH A . G 4 HOH 73 179 130 HOH HOH A . G 4 HOH 74 180 133 HOH HOH A . G 4 HOH 75 181 134 HOH HOH A . G 4 HOH 76 182 135 HOH HOH A . H 4 HOH 1 4 4 HOH HOH B . H 4 HOH 2 7 7 HOH HOH B . H 4 HOH 3 11 11 HOH HOH B . H 4 HOH 4 12 12 HOH HOH B . H 4 HOH 5 15 15 HOH HOH B . H 4 HOH 6 16 16 HOH HOH B . H 4 HOH 7 18 18 HOH HOH B . H 4 HOH 8 103 103 HOH HOH B . H 4 HOH 9 104 3 HOH HOH B . H 4 HOH 10 105 105 HOH HOH B . H 4 HOH 11 106 19 HOH HOH B . H 4 HOH 12 107 20 HOH HOH B . H 4 HOH 13 108 108 HOH HOH B . H 4 HOH 14 109 109 HOH HOH B . H 4 HOH 15 110 21 HOH HOH B . H 4 HOH 16 111 23 HOH HOH B . H 4 HOH 17 112 24 HOH HOH B . H 4 HOH 18 113 25 HOH HOH B . H 4 HOH 19 114 26 HOH HOH B . H 4 HOH 20 115 115 HOH HOH B . H 4 HOH 21 116 32 HOH HOH B . H 4 HOH 22 117 33 HOH HOH B . H 4 HOH 23 118 34 HOH HOH B . H 4 HOH 24 119 119 HOH HOH B . H 4 HOH 25 120 120 HOH HOH B . H 4 HOH 26 121 121 HOH HOH B . H 4 HOH 27 122 122 HOH HOH B . H 4 HOH 28 123 35 HOH HOH B . H 4 HOH 29 124 39 HOH HOH B . H 4 HOH 30 125 125 HOH HOH B . H 4 HOH 31 126 40 HOH HOH B . H 4 HOH 32 127 127 HOH HOH B . H 4 HOH 33 128 44 HOH HOH B . H 4 HOH 34 129 129 HOH HOH B . H 4 HOH 35 130 51 HOH HOH B . H 4 HOH 36 131 131 HOH HOH B . H 4 HOH 37 132 132 HOH HOH B . H 4 HOH 38 133 55 HOH HOH B . H 4 HOH 39 134 59 HOH HOH B . H 4 HOH 40 135 62 HOH HOH B . H 4 HOH 41 136 136 HOH HOH B . H 4 HOH 42 137 64 HOH HOH B . H 4 HOH 43 138 70 HOH HOH B . H 4 HOH 44 139 75 HOH HOH B . H 4 HOH 45 140 77 HOH HOH B . H 4 HOH 46 141 78 HOH HOH B . H 4 HOH 47 142 79 HOH HOH B . H 4 HOH 48 143 80 HOH HOH B . H 4 HOH 49 144 86 HOH HOH B . H 4 HOH 50 145 87 HOH HOH B . H 4 HOH 51 146 89 HOH HOH B . H 4 HOH 52 147 90 HOH HOH B . H 4 HOH 53 148 91 HOH HOH B . H 4 HOH 54 149 92 HOH HOH B . H 4 HOH 55 150 93 HOH HOH B . H 4 HOH 56 151 94 HOH HOH B . H 4 HOH 57 152 97 HOH HOH B . H 4 HOH 58 153 98 HOH HOH B . H 4 HOH 59 154 99 HOH HOH B . H 4 HOH 60 155 100 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 9990 ? 1 MORE -117 ? 1 'SSA (A^2)' 15390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 31.4345000000 -0.8660254038 -0.5000000000 0.0000000000 54.4461511105 0.0000000000 0.0000000000 -1.0000000000 26.5853333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -16.1086 15.5363 9.1895 0.3686 0.2606 0.4620 -0.1632 -0.0388 0.0947 3.9194 5.4504 4.9519 -0.7914 -4.2889 0.1347 -0.2719 -0.2361 -0.4127 0.2232 0.0253 0.0607 0.4334 0.1302 0.2465 'X-RAY DIFFRACTION' 2 ? refined -4.4669 17.4676 -3.0661 0.1464 0.1947 0.1831 0.0087 0.0371 -0.0451 9.1871 1.6449 6.5841 0.8002 -6.2388 -0.8837 -0.1197 0.5343 -0.3518 0.1962 -0.0483 0.0632 0.4121 -0.3178 0.1681 'X-RAY DIFFRACTION' 3 ? refined -2.5271 11.6430 7.4629 0.5320 0.1679 0.2294 0.1338 0.0877 0.0985 14.2305 8.2168 10.3339 2.9612 -11.0494 1.3474 -0.6536 0.1307 -1.0842 0.2740 -0.1744 -0.2504 0.7513 -0.1853 0.8280 'X-RAY DIFFRACTION' 4 ? refined -12.4029 25.8134 14.6913 0.1612 0.1612 0.1231 -0.0419 0.0210 0.0415 5.6611 7.0741 2.7596 -5.3601 -2.3258 4.0992 -0.2095 -0.3939 -0.1120 0.3878 0.1672 0.0785 0.2585 -0.0275 0.0424 'X-RAY DIFFRACTION' 5 ? refined -19.1774 40.8242 11.9966 0.1180 0.1350 0.1221 -0.0172 -0.0083 -0.0329 2.7999 4.0611 3.8816 1.1202 -0.8215 0.8953 -0.0462 -0.1471 0.1265 -0.0676 0.0020 -0.0867 -0.0552 -0.1463 0.0442 'X-RAY DIFFRACTION' 6 ? refined -21.8476 20.7323 3.6178 0.2596 0.1285 0.2264 -0.0358 0.0104 -0.0579 17.3932 10.0294 11.2098 -4.6950 -11.7923 2.3012 0.3143 0.7447 -0.0422 -0.4691 -0.2931 -0.3032 0.6470 -0.5274 -0.0212 'X-RAY DIFFRACTION' 7 ? refined -24.1955 27.3387 16.2331 0.1447 0.2447 0.1736 -0.0983 0.0529 0.0199 1.7507 5.9434 6.8332 -1.4091 2.3160 2.3878 -0.0453 -0.2959 -0.1072 0.5238 -0.1708 0.4664 0.3809 -0.7180 0.2162 'X-RAY DIFFRACTION' 8 ? refined -27.5675 33.9889 9.2773 0.0983 0.2312 0.1485 -0.0323 -0.0120 -0.0153 4.0871 8.6820 11.8255 1.3220 4.6773 -1.5159 -0.0078 -0.0938 -0.1164 0.2840 -0.0962 0.4125 -0.2120 -0.7287 0.1040 'X-RAY DIFFRACTION' 9 ? refined -11.2423 26.8150 4.3738 0.1322 0.1341 0.1268 -0.0338 0.0229 0.0013 13.0179 2.2762 0.8560 -4.6802 0.4674 -0.3162 -0.0209 0.1909 0.4262 -0.0984 -0.0796 -0.0461 0.1424 0.0205 0.1005 'X-RAY DIFFRACTION' 10 ? refined 6.7430 15.7834 5.1418 0.2828 0.3582 0.2644 0.2095 0.0504 0.1201 12.7015 9.8344 8.3169 -2.3414 -8.1754 -3.8295 -0.3743 -0.8291 -0.1659 -0.1370 -0.2495 -0.6872 0.4505 0.8551 0.6237 'X-RAY DIFFRACTION' 11 ? refined 1.8644 22.2983 12.6272 0.1283 0.2824 0.0499 0.0773 -0.0153 0.0360 10.6922 36.8109 10.8630 -3.3354 0.5084 5.2283 -0.2169 -0.6478 0.2801 0.3350 -0.0884 -0.9963 0.2334 1.0618 0.3052 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 59 ? ? A 71 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 72 ? ? A 82 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 83 ? ? A 91 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 92 ? ? A 106 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 107 ? ? A 134 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 24 ? ? B 32 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 33 ? ? B 44 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 45 ? ? B 50 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 51 ? ? B 69 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 70 ? ? B 81 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 82 ? ? B 92 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3NQJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'MET AT N-TERMINUS WAS INTRODUCED IN SEQUENCE BECAUSE IT IS NEEDED TO INITIATE TRANSCRIPTION' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 25 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 168.28 _pdbx_validate_torsion.psi 135.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 59 ? CG ? A MET 1 CG 2 1 Y 1 A MET 59 ? SD ? A MET 1 SD 3 1 Y 1 A MET 59 ? CE ? A MET 1 CE 4 1 Y 1 B ASP 24 ? CG ? B ASP 6 CG 5 1 Y 1 B ASP 24 ? OD1 ? B ASP 6 OD1 6 1 Y 1 B ASP 24 ? OD2 ? B ASP 6 OD2 7 1 Y 1 B MET 84 ? CG ? B MET 66 CG 8 1 Y 1 B MET 84 ? SD ? B MET 66 SD 9 1 Y 1 B MET 84 ? CE ? B MET 66 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 135 ? A LEU 77 2 1 Y 1 A GLU 136 ? A GLU 78 3 1 Y 1 A GLU 137 ? A GLU 79 4 1 Y 1 A GLY 138 ? A GLY 80 5 1 Y 1 A LEU 139 ? A LEU 81 6 1 Y 1 A GLY 140 ? A GLY 82 7 1 Y 1 B MET 19 ? B MET 1 8 1 Y 1 B LYS 20 ? B LYS 2 9 1 Y 1 B VAL 21 ? B VAL 3 10 1 Y 1 B LEU 22 ? B LEU 4 11 1 Y 1 B ARG 23 ? B ARG 5 12 1 Y 1 B GLN 93 ? B GLN 75 13 1 Y 1 B GLY 94 ? B GLY 76 14 1 Y 1 B ARG 95 ? B ARG 77 15 1 Y 1 B THR 96 ? B THR 78 16 1 Y 1 B LEU 97 ? B LEU 79 17 1 Y 1 B TYR 98 ? B TYR 80 18 1 Y 1 B GLY 99 ? B GLY 81 19 1 Y 1 B PHE 100 ? B PHE 82 20 1 Y 1 B GLY 101 ? B GLY 83 21 1 Y 1 B GLY 102 ? B GLY 84 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PO4 P P N N 273 PO4 O1 O N N 274 PO4 O2 O N N 275 PO4 O3 O N N 276 PO4 O4 O N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SER N N N N 295 SER CA C N S 296 SER C C N N 297 SER O O N N 298 SER CB C N N 299 SER OG O N N 300 SER OXT O N N 301 SER H H N N 302 SER H2 H N N 303 SER HA H N N 304 SER HB2 H N N 305 SER HB3 H N N 306 SER HG H N N 307 SER HXT H N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PO4 P O1 doub N N 260 PO4 P O2 sing N N 261 PO4 P O3 sing N N 262 PO4 P O4 sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NQU _pdbx_initial_refinement_model.details 'PDB ENTRY 3NQU' #