data_3NR6 # _entry.id 3NR6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NR6 pdb_00003nr6 10.2210/pdb3nr6/pdb RCSB RCSB060177 ? ? WWPDB D_1000060177 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-12-27 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site 9 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 4 'Structure model' '_struct_ref_seq_dif.details' 10 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 11 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 12 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NR6 _pdbx_database_status.recvd_initial_deposition_date 2010-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HVP 'HUMAN IMMUNODEFICIENCY VIRUS 1 (HIV-1) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE' unspecified PDB 4FIV 'FELINE IMMUNODEFICIENCY VIRUS (FIV) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE' unspecified PDB 2FMB 'EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) PROTEASE. RELATED RETROVIRAL, ASPARTIC PROTEASE' unspecified PDB 2I1A 'DAMAGE-INDUCIBLE PROTEIN, DDI1. RETROVIRAL PROTEASE-LIKE DOMAIN, RESIDUES 180-325' unspecified PDB 2RSP 'STRUCTURE OF THE ASPARTIC PROTEASE FROM ROUS SARCOMA RETROVIRUS REFINED AT 2 ANGSTROMS RESOLUTION' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubkowski, J.' 1 'Li, M.' 2 'Gustchina, A.' 3 'Zhou, D.' 4 'Dauter, Z.' 5 'Wlodawer, A.' 6 # _citation.id primary _citation.title 'Crystal structure of XMRV protease differs from the structures of other retropepsins.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 227 _citation.page_last 229 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21258323 _citation.pdbx_database_id_DOI 10.1038/nsmb.1964 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Dimaio, F.' 2 ? primary 'Zhou, D.' 3 ? primary 'Gustchina, A.' 4 ? primary 'Lubkowski, J.' 5 ? primary 'Dauter, Z.' 6 ? primary 'Baker, D.' 7 ? primary 'Wlodawer, A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protease p14' 14345.290 2 3.4.23.- ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 66 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHTLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHL ATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHTLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHL ATGKVTHSFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'PHOSPHATE ION' PO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 THR n 1 9 LEU n 1 10 GLY n 1 11 ASP n 1 12 GLN n 1 13 GLY n 1 14 GLY n 1 15 GLN n 1 16 GLY n 1 17 GLN n 1 18 GLU n 1 19 PRO n 1 20 PRO n 1 21 PRO n 1 22 GLU n 1 23 PRO n 1 24 ARG n 1 25 ILE n 1 26 THR n 1 27 LEU n 1 28 LYS n 1 29 VAL n 1 30 GLY n 1 31 GLY n 1 32 GLN n 1 33 PRO n 1 34 VAL n 1 35 THR n 1 36 PHE n 1 37 LEU n 1 38 VAL n 1 39 ASP n 1 40 THR n 1 41 GLY n 1 42 ALA n 1 43 GLN n 1 44 HIS n 1 45 SER n 1 46 VAL n 1 47 LEU n 1 48 THR n 1 49 GLN n 1 50 ASN n 1 51 PRO n 1 52 GLY n 1 53 PRO n 1 54 LEU n 1 55 SER n 1 56 ASP n 1 57 LYS n 1 58 SER n 1 59 ALA n 1 60 TRP n 1 61 VAL n 1 62 GLN n 1 63 GLY n 1 64 ALA n 1 65 THR n 1 66 GLY n 1 67 GLY n 1 68 LYS n 1 69 ARG n 1 70 TYR n 1 71 ARG n 1 72 TRP n 1 73 THR n 1 74 THR n 1 75 ASP n 1 76 ARG n 1 77 LYS n 1 78 VAL n 1 79 HIS n 1 80 LEU n 1 81 ALA n 1 82 THR n 1 83 GLY n 1 84 LYS n 1 85 VAL n 1 86 THR n 1 87 HIS n 1 88 SER n 1 89 PHE n 1 90 LEU n 1 91 HIS n 1 92 VAL n 1 93 PRO n 1 94 ASP n 1 95 CYS n 1 96 PRO n 1 97 TYR n 1 98 PRO n 1 99 LEU n 1 100 LEU n 1 101 GLY n 1 102 ARG n 1 103 ASP n 1 104 LEU n 1 105 LEU n 1 106 THR n 1 107 LYS n 1 108 LEU n 1 109 LYS n 1 110 ALA n 1 111 GLN n 1 112 ILE n 1 113 HIS n 1 114 PHE n 1 115 GLU n 1 116 GLY n 1 117 SER n 1 118 GLY n 1 119 ALA n 1 120 GLN n 1 121 VAL n 1 122 VAL n 1 123 GLY n 1 124 PRO n 1 125 MET n 1 126 GLY n 1 127 GLN n 1 128 PRO n 1 129 LEU n 1 130 GLN n 1 131 VAL n 1 132 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain pCDNA3.1-XMRV-VP63 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'RETROVIRAL PROTEASE FROM XMRV' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xenotropic MuLV-related virus VP62' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 373193 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)tonA pRARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST-521 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -6 ? ? ? A . n A 1 2 HIS 2 -5 ? ? ? A . n A 1 3 HIS 3 -4 ? ? ? A . n A 1 4 HIS 4 -3 ? ? ? A . n A 1 5 HIS 5 -2 ? ? ? A . n A 1 6 HIS 6 -1 ? ? ? A . n A 1 7 HIS 7 0 ? ? ? A . n A 1 8 THR 8 1 1 THR THR A . n A 1 9 LEU 9 2 2 LEU LEU A . n A 1 10 GLY 10 3 3 GLY GLY A . n A 1 11 ASP 11 4 4 ASP ASP A . n A 1 12 GLN 12 5 5 GLN GLN A . n A 1 13 GLY 13 6 6 GLY GLY A . n A 1 14 GLY 14 7 7 GLY GLY A . n A 1 15 GLN 15 8 8 GLN GLN A . n A 1 16 GLY 16 9 9 GLY GLY A . n A 1 17 GLN 17 10 10 GLN GLN A . n A 1 18 GLU 18 11 11 GLU GLU A . n A 1 19 PRO 19 12 12 PRO PRO A . n A 1 20 PRO 20 13 13 PRO PRO A . n A 1 21 PRO 21 14 14 PRO PRO A . n A 1 22 GLU 22 15 15 GLU GLU A . n A 1 23 PRO 23 16 16 PRO PRO A . n A 1 24 ARG 24 17 17 ARG ARG A . n A 1 25 ILE 25 18 18 ILE ILE A . n A 1 26 THR 26 19 19 THR THR A . n A 1 27 LEU 27 20 20 LEU LEU A . n A 1 28 LYS 28 21 21 LYS LYS A . n A 1 29 VAL 29 22 22 VAL VAL A . n A 1 30 GLY 30 23 23 GLY GLY A . n A 1 31 GLY 31 24 24 GLY GLY A . n A 1 32 GLN 32 25 25 GLN GLN A . n A 1 33 PRO 33 26 26 PRO PRO A . n A 1 34 VAL 34 27 27 VAL VAL A . n A 1 35 THR 35 28 28 THR THR A . n A 1 36 PHE 36 29 29 PHE PHE A . n A 1 37 LEU 37 30 30 LEU LEU A . n A 1 38 VAL 38 31 31 VAL VAL A . n A 1 39 ASP 39 32 32 ASP ASP A . n A 1 40 THR 40 33 33 THR THR A . n A 1 41 GLY 41 34 34 GLY GLY A . n A 1 42 ALA 42 35 35 ALA ALA A . n A 1 43 GLN 43 36 36 GLN GLN A . n A 1 44 HIS 44 37 37 HIS HIS A . n A 1 45 SER 45 38 38 SER SER A . n A 1 46 VAL 46 39 39 VAL VAL A . n A 1 47 LEU 47 40 40 LEU LEU A . n A 1 48 THR 48 41 41 THR THR A . n A 1 49 GLN 49 42 42 GLN GLN A . n A 1 50 ASN 50 43 43 ASN ASN A . n A 1 51 PRO 51 44 44 PRO PRO A . n A 1 52 GLY 52 45 45 GLY GLY A . n A 1 53 PRO 53 46 46 PRO PRO A . n A 1 54 LEU 54 47 47 LEU LEU A . n A 1 55 SER 55 48 48 SER SER A . n A 1 56 ASP 56 49 49 ASP ASP A . n A 1 57 LYS 57 50 50 LYS LYS A . n A 1 58 SER 58 51 51 SER SER A . n A 1 59 ALA 59 52 52 ALA ALA A . n A 1 60 TRP 60 53 53 TRP TRP A . n A 1 61 VAL 61 54 54 VAL VAL A . n A 1 62 GLN 62 55 55 GLN GLN A . n A 1 63 GLY 63 56 ? ? ? A . n A 1 64 ALA 64 57 ? ? ? A . n A 1 65 THR 65 58 ? ? ? A . n A 1 66 GLY 66 59 ? ? ? A . n A 1 67 GLY 67 60 60 GLY GLY A . n A 1 68 LYS 68 61 61 LYS LYS A . n A 1 69 ARG 69 62 62 ARG ARG A . n A 1 70 TYR 70 63 63 TYR TYR A . n A 1 71 ARG 71 64 64 ARG ARG A . n A 1 72 TRP 72 65 65 TRP TRP A . n A 1 73 THR 73 66 66 THR THR A . n A 1 74 THR 74 67 67 THR THR A . n A 1 75 ASP 75 68 68 ASP ASP A . n A 1 76 ARG 76 69 69 ARG ARG A . n A 1 77 LYS 77 70 70 LYS LYS A . n A 1 78 VAL 78 71 71 VAL VAL A . n A 1 79 HIS 79 72 72 HIS HIS A . n A 1 80 LEU 80 73 73 LEU LEU A . n A 1 81 ALA 81 74 74 ALA ALA A . n A 1 82 THR 82 75 75 THR THR A . n A 1 83 GLY 83 76 76 GLY GLY A . n A 1 84 LYS 84 77 77 LYS LYS A . n A 1 85 VAL 85 78 78 VAL VAL A . n A 1 86 THR 86 79 79 THR THR A . n A 1 87 HIS 87 80 80 HIS HIS A . n A 1 88 SER 88 81 81 SER SER A . n A 1 89 PHE 89 82 82 PHE PHE A . n A 1 90 LEU 90 83 83 LEU LEU A . n A 1 91 HIS 91 84 84 HIS HIS A . n A 1 92 VAL 92 85 85 VAL VAL A . n A 1 93 PRO 93 86 86 PRO PRO A . n A 1 94 ASP 94 87 87 ASP ASP A . n A 1 95 CYS 95 88 88 CYS CYS A . n A 1 96 PRO 96 89 89 PRO PRO A . n A 1 97 TYR 97 90 90 TYR TYR A . n A 1 98 PRO 98 91 91 PRO PRO A . n A 1 99 LEU 99 92 92 LEU LEU A . n A 1 100 LEU 100 93 93 LEU LEU A . n A 1 101 GLY 101 94 94 GLY GLY A . n A 1 102 ARG 102 95 95 ARG ARG A . n A 1 103 ASP 103 96 96 ASP ASP A . n A 1 104 LEU 104 97 97 LEU LEU A . n A 1 105 LEU 105 98 98 LEU LEU A . n A 1 106 THR 106 99 99 THR THR A . n A 1 107 LYS 107 100 100 LYS LYS A . n A 1 108 LEU 108 101 101 LEU LEU A . n A 1 109 LYS 109 102 102 LYS LYS A . n A 1 110 ALA 110 103 103 ALA ALA A . n A 1 111 GLN 111 104 104 GLN GLN A . n A 1 112 ILE 112 105 105 ILE ILE A . n A 1 113 HIS 113 106 106 HIS HIS A . n A 1 114 PHE 114 107 107 PHE PHE A . n A 1 115 GLU 115 108 108 GLU GLU A . n A 1 116 GLY 116 109 109 GLY GLY A . n A 1 117 SER 117 110 110 SER SER A . n A 1 118 GLY 118 111 111 GLY GLY A . n A 1 119 ALA 119 112 112 ALA ALA A . n A 1 120 GLN 120 113 113 GLN GLN A . n A 1 121 VAL 121 114 114 VAL VAL A . n A 1 122 VAL 122 115 115 VAL VAL A . n A 1 123 GLY 123 116 116 GLY GLY A . n A 1 124 PRO 124 117 117 PRO PRO A . n A 1 125 MET 125 118 118 MET MET A . n A 1 126 GLY 126 119 119 GLY GLY A . n A 1 127 GLN 127 120 120 GLN GLN A . n A 1 128 PRO 128 121 121 PRO PRO A . n A 1 129 LEU 129 122 122 LEU LEU A . n A 1 130 GLN 130 123 123 GLN GLN A . n A 1 131 VAL 131 124 124 VAL VAL A . n A 1 132 LEU 132 125 ? ? ? A . n B 1 1 MET 1 -6 ? ? ? B . n B 1 2 HIS 2 -5 ? ? ? B . n B 1 3 HIS 3 -4 ? ? ? B . n B 1 4 HIS 4 -3 ? ? ? B . n B 1 5 HIS 5 -2 ? ? ? B . n B 1 6 HIS 6 -1 ? ? ? B . n B 1 7 HIS 7 0 ? ? ? B . n B 1 8 THR 8 1 1 THR THR B . n B 1 9 LEU 9 2 2 LEU LEU B . n B 1 10 GLY 10 3 3 GLY GLY B . n B 1 11 ASP 11 4 4 ASP ASP B . n B 1 12 GLN 12 5 5 GLN GLN B . n B 1 13 GLY 13 6 ? ? ? B . n B 1 14 GLY 14 7 ? ? ? B . n B 1 15 GLN 15 8 ? ? ? B . n B 1 16 GLY 16 9 ? ? ? B . n B 1 17 GLN 17 10 ? ? ? B . n B 1 18 GLU 18 11 ? ? ? B . n B 1 19 PRO 19 12 12 PRO PRO B . n B 1 20 PRO 20 13 13 PRO PRO B . n B 1 21 PRO 21 14 14 PRO PRO B . n B 1 22 GLU 22 15 15 GLU GLU B . n B 1 23 PRO 23 16 16 PRO PRO B . n B 1 24 ARG 24 17 17 ARG ARG B . n B 1 25 ILE 25 18 18 ILE ILE B . n B 1 26 THR 26 19 19 THR THR B . n B 1 27 LEU 27 20 20 LEU LEU B . n B 1 28 LYS 28 21 21 LYS LYS B . n B 1 29 VAL 29 22 22 VAL VAL B . n B 1 30 GLY 30 23 23 GLY GLY B . n B 1 31 GLY 31 24 24 GLY GLY B . n B 1 32 GLN 32 25 25 GLN GLN B . n B 1 33 PRO 33 26 26 PRO PRO B . n B 1 34 VAL 34 27 27 VAL VAL B . n B 1 35 THR 35 28 28 THR THR B . n B 1 36 PHE 36 29 29 PHE PHE B . n B 1 37 LEU 37 30 30 LEU LEU B . n B 1 38 VAL 38 31 31 VAL VAL B . n B 1 39 ASP 39 32 32 ASP ASP B . n B 1 40 THR 40 33 33 THR THR B . n B 1 41 GLY 41 34 34 GLY GLY B . n B 1 42 ALA 42 35 35 ALA ALA B . n B 1 43 GLN 43 36 36 GLN GLN B . n B 1 44 HIS 44 37 37 HIS HIS B . n B 1 45 SER 45 38 38 SER SER B . n B 1 46 VAL 46 39 39 VAL VAL B . n B 1 47 LEU 47 40 40 LEU LEU B . n B 1 48 THR 48 41 41 THR THR B . n B 1 49 GLN 49 42 42 GLN GLN B . n B 1 50 ASN 50 43 43 ASN ASN B . n B 1 51 PRO 51 44 44 PRO PRO B . n B 1 52 GLY 52 45 45 GLY GLY B . n B 1 53 PRO 53 46 46 PRO PRO B . n B 1 54 LEU 54 47 47 LEU LEU B . n B 1 55 SER 55 48 48 SER SER B . n B 1 56 ASP 56 49 49 ASP ASP B . n B 1 57 LYS 57 50 50 LYS LYS B . n B 1 58 SER 58 51 51 SER SER B . n B 1 59 ALA 59 52 52 ALA ALA B . n B 1 60 TRP 60 53 53 TRP TRP B . n B 1 61 VAL 61 54 54 VAL VAL B . n B 1 62 GLN 62 55 ? ? ? B . n B 1 63 GLY 63 56 ? ? ? B . n B 1 64 ALA 64 57 ? ? ? B . n B 1 65 THR 65 58 ? ? ? B . n B 1 66 GLY 66 59 ? ? ? B . n B 1 67 GLY 67 60 60 GLY GLY B . n B 1 68 LYS 68 61 61 LYS LYS B . n B 1 69 ARG 69 62 62 ARG ARG B . n B 1 70 TYR 70 63 63 TYR TYR B . n B 1 71 ARG 71 64 64 ARG ARG B . n B 1 72 TRP 72 65 65 TRP TRP B . n B 1 73 THR 73 66 66 THR THR B . n B 1 74 THR 74 67 67 THR THR B . n B 1 75 ASP 75 68 68 ASP ASP B . n B 1 76 ARG 76 69 69 ARG ARG B . n B 1 77 LYS 77 70 70 LYS LYS B . n B 1 78 VAL 78 71 71 VAL VAL B . n B 1 79 HIS 79 72 72 HIS HIS B . n B 1 80 LEU 80 73 73 LEU LEU B . n B 1 81 ALA 81 74 74 ALA ALA B . n B 1 82 THR 82 75 75 THR THR B . n B 1 83 GLY 83 76 76 GLY GLY B . n B 1 84 LYS 84 77 77 LYS LYS B . n B 1 85 VAL 85 78 78 VAL VAL B . n B 1 86 THR 86 79 79 THR THR B . n B 1 87 HIS 87 80 80 HIS HIS B . n B 1 88 SER 88 81 81 SER SER B . n B 1 89 PHE 89 82 82 PHE PHE B . n B 1 90 LEU 90 83 83 LEU LEU B . n B 1 91 HIS 91 84 84 HIS HIS B . n B 1 92 VAL 92 85 85 VAL VAL B . n B 1 93 PRO 93 86 86 PRO PRO B . n B 1 94 ASP 94 87 87 ASP ASP B . n B 1 95 CYS 95 88 88 CYS CYS B . n B 1 96 PRO 96 89 89 PRO PRO B . n B 1 97 TYR 97 90 90 TYR TYR B . n B 1 98 PRO 98 91 91 PRO PRO B . n B 1 99 LEU 99 92 92 LEU LEU B . n B 1 100 LEU 100 93 93 LEU LEU B . n B 1 101 GLY 101 94 94 GLY GLY B . n B 1 102 ARG 102 95 95 ARG ARG B . n B 1 103 ASP 103 96 96 ASP ASP B . n B 1 104 LEU 104 97 97 LEU LEU B . n B 1 105 LEU 105 98 98 LEU LEU B . n B 1 106 THR 106 99 99 THR THR B . n B 1 107 LYS 107 100 100 LYS LYS B . n B 1 108 LEU 108 101 101 LEU LEU B . n B 1 109 LYS 109 102 102 LYS LYS B . n B 1 110 ALA 110 103 103 ALA ALA B . n B 1 111 GLN 111 104 104 GLN GLN B . n B 1 112 ILE 112 105 105 ILE ILE B . n B 1 113 HIS 113 106 106 HIS HIS B . n B 1 114 PHE 114 107 107 PHE PHE B . n B 1 115 GLU 115 108 108 GLU GLU B . n B 1 116 GLY 116 109 109 GLY GLY B . n B 1 117 SER 117 110 110 SER SER B . n B 1 118 GLY 118 111 111 GLY GLY B . n B 1 119 ALA 119 112 112 ALA ALA B . n B 1 120 GLN 120 113 113 GLN GLN B . n B 1 121 VAL 121 114 114 VAL VAL B . n B 1 122 VAL 122 115 115 VAL VAL B . n B 1 123 GLY 123 116 116 GLY GLY B . n B 1 124 PRO 124 117 117 PRO PRO B . n B 1 125 MET 125 118 118 MET MET B . n B 1 126 GLY 126 119 119 GLY GLY B . n B 1 127 GLN 127 120 120 GLN GLN B . n B 1 128 PRO 128 121 121 PRO PRO B . n B 1 129 LEU 129 122 122 LEU LEU B . n B 1 130 GLN 130 123 123 GLN GLN B . n B 1 131 VAL 131 124 124 VAL VAL B . n B 1 132 LEU 132 125 125 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 126 1 K K A . D 3 PO4 1 127 1 PO4 PO4 A . E 4 HOH 1 128 4 HOH HOH A . E 4 HOH 2 129 6 HOH HOH A . E 4 HOH 3 130 7 HOH HOH A . E 4 HOH 4 131 8 HOH HOH A . E 4 HOH 5 132 9 HOH HOH A . E 4 HOH 6 133 12 HOH HOH A . E 4 HOH 7 134 15 HOH HOH A . E 4 HOH 8 135 16 HOH HOH A . E 4 HOH 9 136 18 HOH HOH A . E 4 HOH 10 137 19 HOH HOH A . E 4 HOH 11 138 21 HOH HOH A . E 4 HOH 12 139 22 HOH HOH A . E 4 HOH 13 140 23 HOH HOH A . E 4 HOH 14 141 24 HOH HOH A . E 4 HOH 15 142 25 HOH HOH A . E 4 HOH 16 143 26 HOH HOH A . E 4 HOH 17 144 27 HOH HOH A . E 4 HOH 18 145 28 HOH HOH A . E 4 HOH 19 146 30 HOH HOH A . E 4 HOH 20 147 31 HOH HOH A . E 4 HOH 21 148 32 HOH HOH A . E 4 HOH 22 149 33 HOH HOH A . E 4 HOH 23 150 35 HOH HOH A . E 4 HOH 24 151 36 HOH HOH A . E 4 HOH 25 152 37 HOH HOH A . E 4 HOH 26 153 46 HOH HOH A . E 4 HOH 27 154 48 HOH HOH A . E 4 HOH 28 155 49 HOH HOH A . E 4 HOH 29 156 50 HOH HOH A . E 4 HOH 30 157 59 HOH HOH A . E 4 HOH 31 158 62 HOH HOH A . E 4 HOH 32 159 63 HOH HOH A . E 4 HOH 33 160 64 HOH HOH A . E 4 HOH 34 161 65 HOH HOH A . E 4 HOH 35 162 66 HOH HOH A . F 4 HOH 1 126 1 HOH HOH B . F 4 HOH 2 127 2 HOH HOH B . F 4 HOH 3 128 3 HOH HOH B . F 4 HOH 4 129 5 HOH HOH B . F 4 HOH 5 130 10 HOH HOH B . F 4 HOH 6 131 11 HOH HOH B . F 4 HOH 7 132 13 HOH HOH B . F 4 HOH 8 133 14 HOH HOH B . F 4 HOH 9 134 17 HOH HOH B . F 4 HOH 10 135 20 HOH HOH B . F 4 HOH 11 136 29 HOH HOH B . F 4 HOH 12 137 34 HOH HOH B . F 4 HOH 13 138 38 HOH HOH B . F 4 HOH 14 139 39 HOH HOH B . F 4 HOH 15 140 40 HOH HOH B . F 4 HOH 16 141 41 HOH HOH B . F 4 HOH 17 142 42 HOH HOH B . F 4 HOH 18 143 43 HOH HOH B . F 4 HOH 19 144 44 HOH HOH B . F 4 HOH 20 145 45 HOH HOH B . F 4 HOH 21 146 47 HOH HOH B . F 4 HOH 22 147 51 HOH HOH B . F 4 HOH 23 148 52 HOH HOH B . F 4 HOH 24 149 53 HOH HOH B . F 4 HOH 25 150 54 HOH HOH B . F 4 HOH 26 151 55 HOH HOH B . F 4 HOH 27 152 56 HOH HOH B . F 4 HOH 28 153 57 HOH HOH B . F 4 HOH 29 154 58 HOH HOH B . F 4 HOH 30 155 60 HOH HOH B . F 4 HOH 31 156 61 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 Rosetta 'model building' . ? 3 REFMAC refinement 5.5.0104 ? 4 HKL-3000 'data reduction' . ? 5 HKL-3000 'data scaling' . ? 6 Rosetta phasing . ? 7 # _cell.entry_id 3NR6 _cell.length_a 63.915 _cell.length_b 63.915 _cell.length_c 106.509 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NR6 _symmetry.space_group_name_H-M 'P 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NR6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;PROTEIN CONCENTRATION: 10 MG/ML PRECIPITANT: 0.06 M KH2PO4, 1.34 M NA2HPO4, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-04-10 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI-220' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3NR6 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -1.74 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.97 _reflns.number_obs 16141 _reflns.number_all 16141 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_netI_over_sigmaI 32.1 _reflns.B_iso_Wilson_estimate 37.8 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 82.1 _reflns_shell.Rmerge_I_obs 0.257 _reflns_shell.pdbx_Rsym_value 0.257 _reflns_shell.meanI_over_sigI_obs 3.23 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 667 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NR6 _refine.ls_number_reflns_obs 15336 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.97 _refine.ls_percent_reflns_obs 98.46 _refine.ls_R_factor_obs 0.19737 _refine.ls_R_factor_all 0.19737 _refine.ls_R_factor_R_work 0.19568 _refine.ls_R_factor_R_free 0.23322 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 815 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 47.871 _refine.aniso_B[1][1] 0.48 _refine.aniso_B[2][2] 0.48 _refine.aniso_B[3][3] -0.97 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'ASSEMBLY OF RETROVIRAL PROTEASES' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.164 _refine.overall_SU_ML 0.108 _refine.overall_SU_B 8.324 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1791 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1863 _refine_hist.d_res_high 1.97 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1863 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.837 1.975 ? 2538 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.603 5.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.578 24.211 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.844 15.000 ? 302 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.200 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.145 0.200 ? 283 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.022 ? 1408 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.739 2.000 ? 1168 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.062 3.000 ? 1898 'X-RAY DIFFRACTION' ? r_scbond_it 3.676 2.000 ? 695 'X-RAY DIFFRACTION' ? r_scangle_it 5.066 3.000 ? 639 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.965 _refine_ls_shell.d_res_low 2.016 _refine_ls_shell.number_reflns_R_work 920 _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.percent_reflns_obs 83.76 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 980 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3NR6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NR6 _struct.title 'Crystal structure of xenotropic murine leukemia virus-related virus (XMRV) protease' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NR6 _struct_keywords.pdbx_keywords HYDROLASE/INHIBITOR _struct_keywords.text 'DIMER, PROTEASE, HYDROLASE-INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_XMRV6 _struct_ref.pdbx_db_accession A1Z651 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLGDQGGQGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTH SFLHVPDCPYPLLGRDLLTKLKAQIHFEGSGAQVVGPMGQPLQVL ; _struct_ref.pdbx_align_begin 533 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NR6 A 8 ? 132 ? A1Z651 533 ? 657 ? 1 125 2 1 3NR6 B 8 ? 132 ? A1Z651 533 ? 657 ? 1 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NR6 MET A 1 ? UNP A1Z651 ? ? 'expression tag' -6 1 1 3NR6 HIS A 2 ? UNP A1Z651 ? ? 'expression tag' -5 2 1 3NR6 HIS A 3 ? UNP A1Z651 ? ? 'expression tag' -4 3 1 3NR6 HIS A 4 ? UNP A1Z651 ? ? 'expression tag' -3 4 1 3NR6 HIS A 5 ? UNP A1Z651 ? ? 'expression tag' -2 5 1 3NR6 HIS A 6 ? UNP A1Z651 ? ? 'expression tag' -1 6 1 3NR6 HIS A 7 ? UNP A1Z651 ? ? 'expression tag' 0 7 2 3NR6 MET B 1 ? UNP A1Z651 ? ? 'expression tag' -6 8 2 3NR6 HIS B 2 ? UNP A1Z651 ? ? 'expression tag' -5 9 2 3NR6 HIS B 3 ? UNP A1Z651 ? ? 'expression tag' -4 10 2 3NR6 HIS B 4 ? UNP A1Z651 ? ? 'expression tag' -3 11 2 3NR6 HIS B 5 ? UNP A1Z651 ? ? 'expression tag' -2 12 2 3NR6 HIS B 6 ? UNP A1Z651 ? ? 'expression tag' -1 13 2 3NR6 HIS B 7 ? UNP A1Z651 ? ? 'expression tag' 0 14 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1960 ? 1 MORE -13 ? 1 'SSA (A^2)' 11290 ? 2 'ABSA (A^2)' 15020 ? 2 MORE -57 ? 2 'SSA (A^2)' 37980 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2,3,4 A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 63.9150000000 0.0000000000 -1.0000000000 0.0000000000 63.9150000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 63.9150000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 63.9150000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 14 ? GLU A 18 ? GLY A 7 GLU A 11 5 ? 5 HELX_P HELX_P2 2 GLY A 101 ? LYS A 109 ? GLY A 94 LYS A 102 1 ? 9 HELX_P HELX_P3 3 GLY B 101 ? LYS B 109 ? GLY B 94 LYS B 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLN 12 O ? ? ? 1_555 C K . K ? ? A GLN 5 A K 126 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc2 metalc ? ? A GLN 15 OE1 ? ? ? 1_555 C K . K ? ? A GLN 8 A K 126 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc3 metalc ? ? A PRO 33 O ? ? ? 1_555 C K . K ? ? A PRO 26 A K 126 1_555 ? ? ? ? ? ? ? 2.952 ? ? metalc4 metalc ? ? C K . K ? ? ? 1_555 E HOH . O ? ? A K 126 A HOH 139 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc5 metalc ? ? C K . K ? ? ? 1_555 E HOH . O ? ? A K 126 A HOH 153 1_555 ? ? ? ? ? ? ? 2.575 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLN 12 ? A GLN 5 ? 1_555 K ? C K . ? A K 126 ? 1_555 OE1 ? A GLN 15 ? A GLN 8 ? 1_555 89.3 ? 2 O ? A GLN 12 ? A GLN 5 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? A PRO 33 ? A PRO 26 ? 1_555 105.4 ? 3 OE1 ? A GLN 15 ? A GLN 8 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? A PRO 33 ? A PRO 26 ? 1_555 105.1 ? 4 O ? A GLN 12 ? A GLN 5 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 139 ? 1_555 72.0 ? 5 OE1 ? A GLN 15 ? A GLN 8 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 139 ? 1_555 95.5 ? 6 O ? A PRO 33 ? A PRO 26 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 139 ? 1_555 159.2 ? 7 O ? A GLN 12 ? A GLN 5 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 153 ? 1_555 159.9 ? 8 OE1 ? A GLN 15 ? A GLN 8 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 153 ? 1_555 80.5 ? 9 O ? A PRO 33 ? A PRO 26 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 153 ? 1_555 94.0 ? 10 O ? E HOH . ? A HOH 139 ? 1_555 K ? C K . ? A K 126 ? 1_555 O ? E HOH . ? A HOH 153 ? 1_555 91.7 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 22 A . ? GLU 15 A PRO 23 A ? PRO 16 A 1 -0.30 2 GLU 22 B . ? GLU 15 B PRO 23 B ? PRO 16 B 1 -3.22 3 GLU 22 B . ? GLU 15 B PRO 23 B ? PRO 16 B 1 -2.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 4 ? E ? 5 ? F ? 2 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? parallel F 1 2 ? parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 83 ? HIS A 87 ? GLY A 76 HIS A 80 A 2 ARG A 76 ? LEU A 80 ? ARG A 69 LEU A 73 A 3 ARG A 24 ? VAL A 29 ? ARG A 17 VAL A 22 A 4 GLN A 32 ? VAL A 38 ? GLN A 25 VAL A 31 A 5 LEU A 99 ? LEU A 100 ? LEU A 92 LEU A 93 B 1 VAL A 46 ? LEU A 47 ? VAL A 39 LEU A 40 B 2 LEU A 90 ? HIS A 91 ? LEU A 83 HIS A 84 C 1 LEU A 54 ? VAL A 61 ? LEU A 47 VAL A 54 C 2 LYS A 68 ? THR A 73 ? LYS A 61 THR A 66 D 1 ALA A 119 ? VAL A 122 ? ALA A 112 VAL A 115 D 2 GLN A 111 ? PHE A 114 ? GLN A 104 PHE A 107 D 3 GLN B 111 ? GLU B 115 ? GLN B 104 GLU B 108 D 4 GLY B 118 ? VAL B 122 ? GLY B 111 VAL B 115 E 1 GLY B 83 ? HIS B 87 ? GLY B 76 HIS B 80 E 2 ARG B 76 ? LEU B 80 ? ARG B 69 LEU B 73 E 3 ARG B 24 ? VAL B 29 ? ARG B 17 VAL B 22 E 4 GLN B 32 ? VAL B 38 ? GLN B 25 VAL B 31 E 5 LEU B 99 ? LEU B 100 ? LEU B 92 LEU B 93 F 1 VAL B 46 ? LEU B 47 ? VAL B 39 LEU B 40 F 2 LEU B 90 ? HIS B 91 ? LEU B 83 HIS B 84 G 1 LEU B 54 ? TRP B 60 ? LEU B 47 TRP B 53 G 2 ARG B 69 ? THR B 73 ? ARG B 62 THR B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 85 ? O VAL A 78 N VAL A 78 ? N VAL A 71 A 2 3 O HIS A 79 ? O HIS A 72 N LYS A 28 ? N LYS A 21 A 3 4 N LEU A 27 ? N LEU A 20 O VAL A 34 ? O VAL A 27 A 4 5 N LEU A 37 ? N LEU A 30 O LEU A 100 ? O LEU A 93 B 1 2 N LEU A 47 ? N LEU A 40 O LEU A 90 ? O LEU A 83 C 1 2 N VAL A 61 ? N VAL A 54 O LYS A 68 ? O LYS A 61 D 1 2 O GLN A 120 ? O GLN A 113 N HIS A 113 ? N HIS A 106 D 2 3 N ILE A 112 ? N ILE A 105 O ILE B 112 ? O ILE B 105 D 3 4 N HIS B 113 ? N HIS B 106 O GLN B 120 ? O GLN B 113 E 1 2 O VAL B 85 ? O VAL B 78 N VAL B 78 ? N VAL B 71 E 2 3 O HIS B 79 ? O HIS B 72 N LYS B 28 ? N LYS B 21 E 3 4 N LEU B 27 ? N LEU B 20 O VAL B 34 ? O VAL B 27 E 4 5 N LEU B 37 ? N LEU B 30 O LEU B 100 ? O LEU B 93 F 1 2 N LEU B 47 ? N LEU B 40 O LEU B 90 ? O LEU B 83 G 1 2 N SER B 55 ? N SER B 48 O TRP B 72 ? O TRP B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 126 ? 5 'BINDING SITE FOR RESIDUE K A 126' AC2 Software A PO4 127 ? 3 'BINDING SITE FOR RESIDUE PO4 A 127' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 12 ? GLN A 5 . ? 1_555 ? 2 AC1 5 GLN A 15 ? GLN A 8 . ? 1_555 ? 3 AC1 5 PRO A 33 ? PRO A 26 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 139 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 153 . ? 1_555 ? 6 AC2 3 GLY A 13 ? GLY A 6 . ? 1_555 ? 7 AC2 3 GLY A 14 ? GLY A 7 . ? 1_555 ? 8 AC2 3 LYS A 57 ? LYS A 50 . ? 3_655 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 136 ? ? O B HOH 143 ? ? 2.11 2 1 O A HOH 159 ? ? O A HOH 162 ? ? 2.16 3 1 O B LEU 125 ? ? O B HOH 139 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 137 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 137 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_565 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 87 ? ? -76.89 32.07 2 1 ASN B 43 ? ? 29.93 70.26 3 1 ASP B 87 ? ? -83.29 33.40 4 1 GLU B 108 ? ? -101.59 -169.98 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.1122 21.3554 14.6024 0.0545 0.0701 0.0406 0.0191 -0.0131 -0.0094 3.2387 4.0084 4.5200 0.4637 -1.4235 -0.9411 -0.0732 0.0230 -0.1454 -0.0354 0.0143 0.1128 0.1332 -0.1435 0.0589 'X-RAY DIFFRACTION' 2 ? refined 9.3748 22.8382 38.6955 0.1154 0.0901 0.0480 0.0489 0.0362 0.0470 6.7048 2.9177 5.5570 -1.3269 2.1263 0.4850 -0.1293 -0.3786 -0.1642 0.2565 0.0793 0.1573 0.0569 -0.2462 0.0499 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 124 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 125 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -6 ? A MET 1 2 1 Y 1 A HIS -5 ? A HIS 2 3 1 Y 1 A HIS -4 ? A HIS 3 4 1 Y 1 A HIS -3 ? A HIS 4 5 1 Y 1 A HIS -2 ? A HIS 5 6 1 Y 1 A HIS -1 ? A HIS 6 7 1 Y 1 A HIS 0 ? A HIS 7 8 1 Y 1 A GLY 56 ? A GLY 63 9 1 Y 1 A ALA 57 ? A ALA 64 10 1 Y 1 A THR 58 ? A THR 65 11 1 Y 1 A GLY 59 ? A GLY 66 12 1 Y 1 A LEU 125 ? A LEU 132 13 1 Y 1 B MET -6 ? B MET 1 14 1 Y 1 B HIS -5 ? B HIS 2 15 1 Y 1 B HIS -4 ? B HIS 3 16 1 Y 1 B HIS -3 ? B HIS 4 17 1 Y 1 B HIS -2 ? B HIS 5 18 1 Y 1 B HIS -1 ? B HIS 6 19 1 Y 1 B HIS 0 ? B HIS 7 20 1 Y 1 B GLY 6 ? B GLY 13 21 1 Y 1 B GLY 7 ? B GLY 14 22 1 Y 1 B GLN 8 ? B GLN 15 23 1 Y 1 B GLY 9 ? B GLY 16 24 1 Y 1 B GLN 10 ? B GLN 17 25 1 Y 1 B GLU 11 ? B GLU 18 26 1 Y 1 B GLN 55 ? B GLN 62 27 1 Y 1 B GLY 56 ? B GLY 63 28 1 Y 1 B ALA 57 ? B ALA 64 29 1 Y 1 B THR 58 ? B THR 65 30 1 Y 1 B GLY 59 ? B GLY 66 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 K K K N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PO4 P P N N 274 PO4 O1 O N N 275 PO4 O2 O N N 276 PO4 O3 O N N 277 PO4 O4 O N N 278 PRO N N N N 279 PRO CA C N S 280 PRO C C N N 281 PRO O O N N 282 PRO CB C N N 283 PRO CG C N N 284 PRO CD C N N 285 PRO OXT O N N 286 PRO H H N N 287 PRO HA H N N 288 PRO HB2 H N N 289 PRO HB3 H N N 290 PRO HG2 H N N 291 PRO HG3 H N N 292 PRO HD2 H N N 293 PRO HD3 H N N 294 PRO HXT H N N 295 SER N N N N 296 SER CA C N S 297 SER C C N N 298 SER O O N N 299 SER CB C N N 300 SER OG O N N 301 SER OXT O N N 302 SER H H N N 303 SER H2 H N N 304 SER HA H N N 305 SER HB2 H N N 306 SER HB3 H N N 307 SER HG H N N 308 SER HXT H N N 309 THR N N N N 310 THR CA C N S 311 THR C C N N 312 THR O O N N 313 THR CB C N R 314 THR OG1 O N N 315 THR CG2 C N N 316 THR OXT O N N 317 THR H H N N 318 THR H2 H N N 319 THR HA H N N 320 THR HB H N N 321 THR HG1 H N N 322 THR HG21 H N N 323 THR HG22 H N N 324 THR HG23 H N N 325 THR HXT H N N 326 TRP N N N N 327 TRP CA C N S 328 TRP C C N N 329 TRP O O N N 330 TRP CB C N N 331 TRP CG C Y N 332 TRP CD1 C Y N 333 TRP CD2 C Y N 334 TRP NE1 N Y N 335 TRP CE2 C Y N 336 TRP CE3 C Y N 337 TRP CZ2 C Y N 338 TRP CZ3 C Y N 339 TRP CH2 C Y N 340 TRP OXT O N N 341 TRP H H N N 342 TRP H2 H N N 343 TRP HA H N N 344 TRP HB2 H N N 345 TRP HB3 H N N 346 TRP HD1 H N N 347 TRP HE1 H N N 348 TRP HE3 H N N 349 TRP HZ2 H N N 350 TRP HZ3 H N N 351 TRP HH2 H N N 352 TRP HXT H N N 353 TYR N N N N 354 TYR CA C N S 355 TYR C C N N 356 TYR O O N N 357 TYR CB C N N 358 TYR CG C Y N 359 TYR CD1 C Y N 360 TYR CD2 C Y N 361 TYR CE1 C Y N 362 TYR CE2 C Y N 363 TYR CZ C Y N 364 TYR OH O N N 365 TYR OXT O N N 366 TYR H H N N 367 TYR H2 H N N 368 TYR HA H N N 369 TYR HB2 H N N 370 TYR HB3 H N N 371 TYR HD1 H N N 372 TYR HD2 H N N 373 TYR HE1 H N N 374 TYR HE2 H N N 375 TYR HH H N N 376 TYR HXT H N N 377 VAL N N N N 378 VAL CA C N S 379 VAL C C N N 380 VAL O O N N 381 VAL CB C N N 382 VAL CG1 C N N 383 VAL CG2 C N N 384 VAL OXT O N N 385 VAL H H N N 386 VAL H2 H N N 387 VAL HA H N N 388 VAL HB H N N 389 VAL HG11 H N N 390 VAL HG12 H N N 391 VAL HG13 H N N 392 VAL HG21 H N N 393 VAL HG22 H N N 394 VAL HG23 H N N 395 VAL HXT H N N 396 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PO4 P O1 doub N N 260 PO4 P O2 sing N N 261 PO4 P O3 sing N N 262 PO4 P O4 sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'ASSEMBLY OF RETROVIRAL PROTEASES' # _atom_sites.entry_id 3NR6 _atom_sites.fract_transf_matrix[1][1] 0.015646 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015646 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009389 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P S # loop_