HEADER HYDROLASE 02-JUL-10 3NSN TITLE CRYSTAL STRUCTURE OF INSECT BETA-N-ACETYL-D-HEXOSAMINIDASE OFHEX1 TITLE 2 COMPLEXED WITH TMG-CHITOTRIOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-594; COMPND 5 SYNONYM: BETA-N-ACETYL-D-HEXOSAMINIDASE OFHEX1; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OSTRINIA FURNACALIS; SOURCE 3 ORGANISM_COMMON: ASIAN CORN BORER; SOURCE 4 ORGANISM_TAXID: 93504; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS BETA-N-ACETYL-D-HEXOSAMINIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,T.LIU,F.LIU,Q.YANG,X.SHEN REVDAT 5 09-OCT-24 3NSN 1 REMARK REVDAT 4 01-NOV-23 3NSN 1 HETSYN LINK REVDAT 3 29-JUL-20 3NSN 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 02-MAR-11 3NSN 1 JRNL REVDAT 1 24-NOV-10 3NSN 0 JRNL AUTH T.LIU,H.ZHANG,F.LIU,Q.WU,X.SHEN,Q.YANG JRNL TITL STRUCTURAL DETERMINANTS OF AN INSECT JRNL TITL 2 {BETA}-N-ACETYL-D-HEXOSAMINIDASE SPECIALIZED AS A JRNL TITL 3 CHITINOLYTIC ENZYME JRNL REF J.BIOL.CHEM. V. 286 4049 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21106526 JRNL DOI 10.1074/JBC.M110.184796 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3101 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4803 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6533 ; 1.072 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;38.902 ;24.249 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 794 ;14.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3673 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2851 ; 0.382 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4592 ; 0.744 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 1.056 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1941 ; 1.823 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1O7A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 200MM MGCL2, 30% PEG 400, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.52333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.52333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 117.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.52333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 392 OG SER A 395 1.01 REMARK 500 NZ LYS A 229 OE2 GLU A 282 1.20 REMARK 500 C ASP A 392 OG SER A 395 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 31 CB CYS A 31 SG -0.122 REMARK 500 TYR A 222 CD1 TYR A 222 CE1 -0.103 REMARK 500 PHE A 243 CD1 PHE A 243 CE1 -0.129 REMARK 500 PHE A 243 CE2 PHE A 243 CD2 -0.133 REMARK 500 CYS A 316 CB CYS A 316 SG -0.149 REMARK 500 CYS A 326 CB CYS A 326 SG -0.113 REMARK 500 CYS A 373 CB CYS A 373 SG -0.154 REMARK 500 TYR A 480 CD1 TYR A 480 CE1 -0.103 REMARK 500 TYR A 480 CE2 TYR A 480 CD2 -0.126 REMARK 500 CYS A 585 CB CYS A 585 SG -0.132 REMARK 500 CYS A 592 CB CYS A 592 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 212 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 CYS A 478 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 534 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 536 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 141 16.00 -146.42 REMARK 500 ARG A 388 -0.59 82.30 REMARK 500 LEU A 510 -124.57 56.08 REMARK 500 ASP A 529 -159.52 -154.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND TMX IS LINKED TO CTO. IT IS CALLED AS TMG-CHITOTRIOMYCIN. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NSM RELATED DB: PDB REMARK 900 SAME PROTEIN, APO FORM DBREF 3NSN A 23 594 UNP Q06GJ0 Q06GJ0_9NEOP 23 594 SEQRES 1 A 572 GLU ASP VAL VAL TRP ARG TRP SER CYS ASP ASN GLY LYS SEQRES 2 A 572 CYS VAL LYS LEU LYS ASN ASP PRO ARG SER SER GLU PRO SEQRES 3 A 572 ALA LEU SER LEU GLU ALA CYS LYS MET PHE CYS ASN GLU SEQRES 4 A 572 TYR GLY LEU LEU TRP PRO ARG PRO THR GLY GLU ALA ASP SEQRES 5 A 572 LEU GLY ASN PHE LEU SER LYS ILE ASN LEU ASN SER ILE SEQRES 6 A 572 GLU VAL LYS ILE LEU LYS LYS GLY ALA THR ASP ASP LEU SEQRES 7 A 572 MET GLU ALA ALA ALA LYS ARG PHE LYS GLU GLN VAL SER SEQRES 8 A 572 LEU ALA ILE PRO ARG GLY SER THR PRO LYS LEU THR GLY SEQRES 9 A 572 LYS ALA VAL ASP VAL TYR LEU VAL ASN GLU ASN PRO ASN SEQRES 10 A 572 GLU LYS ALA PHE SER LEU GLU MET ASP GLU SER TYR GLY SEQRES 11 A 572 LEU ARG VAL SER PRO SER GLY ALA ASP ARG VAL ASN ALA SEQRES 12 A 572 THR ILE THR ALA ASN SER PHE PHE GLY MET ARG HIS GLY SEQRES 13 A 572 LEU GLU THR LEU SER GLN LEU PHE VAL PHE ASP ASP ILE SEQRES 14 A 572 ARG ASP HIS LEU LEU MET VAL ARG ASP VAL ASN ILE SER SEQRES 15 A 572 ASP LYS PRO VAL TYR PRO TYR ARG GLY ILE LEU LEU ASP SEQRES 16 A 572 THR ALA ARG ASN TYR TYR SER ILE GLU SER ILE LYS ARG SEQRES 17 A 572 THR ILE GLU ALA MET ALA ALA VAL LYS LEU ASN THR PHE SEQRES 18 A 572 HIS TRP HIS ILE THR ASP SER GLN SER PHE PRO PHE VAL SEQRES 19 A 572 THR THR LYS ARG PRO ASN LEU TYR LYS PHE GLY ALA LEU SEQRES 20 A 572 SER PRO GLN LYS VAL TYR THR LYS ALA ALA ILE ARG GLU SEQRES 21 A 572 VAL VAL ARG PHE GLY LEU GLU ARG GLY VAL ARG VAL LEU SEQRES 22 A 572 PRO GLU PHE ASP ALA PRO ALA HIS VAL GLY GLU GLY TRP SEQRES 23 A 572 GLN ASP THR ASP LEU THR VAL CYS PHE LYS ALA GLU PRO SEQRES 24 A 572 TRP LYS SER TYR CYS VAL GLU PRO PRO CYS GLY GLN LEU SEQRES 25 A 572 ASN PRO THR LYS ASP GLU LEU TYR GLN TYR LEU GLU ASP SEQRES 26 A 572 ILE TYR SER ASP MET ALA GLU VAL PHE ASP THR THR ASP SEQRES 27 A 572 ILE PHE HIS MET GLY GLY ASP GLU VAL SER GLU ALA CYS SEQRES 28 A 572 TRP ASN SER SER ASP SER ILE GLN ASN PHE MET MET GLN SEQRES 29 A 572 ASN ARG TRP ASP LEU ASP LYS GLU SER PHE LEU LYS LEU SEQRES 30 A 572 TRP ASN TYR PHE GLN GLN LYS ALA GLN ASP LYS ALA TYR SEQRES 31 A 572 LYS ALA PHE GLY LYS LYS LEU PRO LEU ILE LEU TRP THR SEQRES 32 A 572 SER THR LEU THR ASN TYR LYS HIS ILE ASP ASP TYR LEU SEQRES 33 A 572 ASN LYS ASP ASP TYR ILE ILE GLN VAL TRP THR THR GLY SEQRES 34 A 572 VAL ASP PRO GLN ILE LYS GLY LEU LEU GLU LYS GLY TYR SEQRES 35 A 572 ARG LEU ILE MET SER ASN TYR ASP ALA LEU TYR PHE ASP SEQRES 36 A 572 CYS GLY TYR GLY ALA TRP VAL GLY ALA GLY ASN ASN TRP SEQRES 37 A 572 CYS SER PRO TYR ILE GLY TRP GLN LYS VAL TYR ASP ASN SEQRES 38 A 572 SER PRO ALA VAL ILE ALA LEU GLU HIS ARG ASP GLN VAL SEQRES 39 A 572 LEU GLY GLY GLU ALA ALA LEU TRP SER GLU GLN SER ASP SEQRES 40 A 572 THR SER THR LEU ASP GLY ARG LEU TRP PRO ARG ALA ALA SEQRES 41 A 572 ALA LEU ALA GLU ARG LEU TRP ALA GLU PRO ALA THR SER SEQRES 42 A 572 TRP GLN ASP ALA GLU TYR ARG MET LEU HIS ILE ARG GLU SEQRES 43 A 572 ARG LEU VAL ARG MET GLY ILE GLN ALA GLU SER LEU GLN SEQRES 44 A 572 PRO GLU TRP CYS TYR GLN ASN GLU GLY TYR CYS TYR SER HET NAG B 1 15 HET NAG B 2 14 HET NAG B 3 14 HET TMX B 4 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TMX 2-DEOXY-2-(TRIMETHYLAMMONIO)-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN TMX 2-DEOXY-2-(TRIMETHYLAMMONIO)-BETA-D-GLUCOSE; 2-DEOXY-2- HETSYN 2 TMX (TRIMETHYLAMMONIO)-D-GLUCOSE; 2-DEOXY-2- HETSYN 3 TMX (TRIMETHYLAMMONIO)-GLUCOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 TMX C9 H20 N O5 1+ FORMUL 3 HOH *425(H2 O) HELIX 1 1 SER A 51 ASN A 60 1 10 HELIX 2 2 THR A 97 LEU A 114 1 18 HELIX 3 3 SER A 171 GLN A 184 1 14 HELIX 4 4 SER A 224 VAL A 238 1 15 HELIX 5 5 PRO A 261 ALA A 268 1 8 HELIX 6 6 THR A 276 ARG A 290 1 15 HELIX 7 7 PRO A 321 TYR A 325 5 5 HELIX 8 8 ASP A 339 PHE A 356 1 18 HELIX 9 9 SER A 370 SER A 376 1 7 HELIX 10 10 SER A 377 GLN A 386 1 10 HELIX 11 11 ASP A 392 GLY A 416 1 25 HELIX 12 12 HIS A 433 LEU A 438 1 6 HELIX 13 13 ASP A 453 LYS A 462 1 10 HELIX 14 14 ASN A 470 TYR A 475 1 6 HELIX 15 15 GLY A 496 ASN A 503 1 8 HELIX 16 16 SER A 504 LEU A 510 1 7 HELIX 17 17 GLU A 511 ASP A 514 5 4 HELIX 18 18 THR A 532 TRP A 538 1 7 HELIX 19 19 PRO A 539 GLU A 551 1 13 HELIX 20 20 SER A 555 MET A 573 1 19 HELIX 21 21 PRO A 582 ASN A 588 1 7 SHEET 1 A 2 TRP A 27 ASP A 32 0 SHEET 2 A 2 LYS A 35 LYS A 40 -1 O LEU A 39 N ARG A 28 SHEET 1 B 8 ALA A 73 ASP A 74 0 SHEET 2 B 8 VAL A 201 ASP A 205 -1 O ASN A 202 N ASP A 74 SHEET 3 B 8 TYR A 151 SER A 158 -1 N LEU A 153 O ILE A 203 SHEET 4 B 8 ARG A 162 ALA A 169 -1 O THR A 166 N ARG A 154 SHEET 5 B 8 LYS A 127 ASN A 135 1 N TYR A 132 O ALA A 165 SHEET 6 B 8 LEU A 79 ILE A 91 1 N LYS A 90 O VAL A 131 SHEET 7 B 8 HIS A 194 VAL A 198 -1 O MET A 197 N SER A 80 SHEET 8 B 8 PHE A 186 ASP A 189 -1 N ASP A 189 O HIS A 194 SHEET 1 C 9 TYR A 211 ASP A 217 0 SHEET 2 C 9 THR A 242 HIS A 246 1 O HIS A 244 N ILE A 214 SHEET 3 C 9 ARG A 293 ALA A 300 1 O ARG A 293 N PHE A 243 SHEET 4 C 9 PHE A 362 GLY A 365 1 O HIS A 363 N PHE A 298 SHEET 5 C 9 LEU A 421 TRP A 424 1 O TRP A 424 N GLY A 365 SHEET 6 C 9 TYR A 443 VAL A 447 1 O ILE A 444 N LEU A 421 SHEET 7 C 9 LEU A 466 MET A 468 1 O ILE A 467 N VAL A 447 SHEET 8 C 9 VAL A 516 LEU A 523 1 O GLY A 518 N MET A 468 SHEET 9 C 9 TYR A 211 ASP A 217 1 N LEU A 215 O ALA A 521 SHEET 1 D 2 THR A 314 VAL A 315 0 SHEET 2 D 2 GLN A 333 LEU A 334 -1 O GLN A 333 N VAL A 315 SSBOND 1 CYS A 31 CYS A 59 1555 1555 2.25 SSBOND 2 CYS A 36 CYS A 55 1555 1555 2.80 SSBOND 3 CYS A 316 CYS A 373 1555 1555 2.97 SSBOND 4 CYS A 326 CYS A 331 1555 1555 1.93 SSBOND 5 CYS A 478 CYS A 491 1555 1555 2.05 SSBOND 6 CYS A 585 CYS A 592 1555 1555 2.33 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.45 LINK O4 NAG B 3 C1 TMX B 4 1555 1555 1.46 CISPEP 1 TRP A 66 PRO A 67 0 -5.89 CISPEP 2 ALA A 300 PRO A 301 0 0.63 CISPEP 3 GLU A 320 PRO A 321 0 -6.61 CISPEP 4 PRO A 329 PRO A 330 0 0.64 CISPEP 5 SER A 492 PRO A 493 0 10.43 CISPEP 6 TRP A 538 PRO A 539 0 10.45 CRYST1 108.500 108.500 175.570 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009217 0.005321 0.000000 0.00000 SCALE2 0.000000 0.010642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005696 0.00000