HEADER OXIDOREDUCTASE 08-JUL-10 3NV5 TITLE CRYSTAL STRUCTURE OF CYTOCHROME P450 CYP101D2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYP101D2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444; SOURCE 5 GENE: SARO_1478; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CYTOCHROME P450 FOLD, OXIDIZING CAMPHOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YANG,S.G.BELL,H.WANG,W.H.ZHOU,M.BARTLAM,L.L.WONG,Z.RAO REVDAT 3 01-NOV-23 3NV5 1 REMARK SEQADV LINK REVDAT 2 26-FEB-14 3NV5 1 JRNL VERSN REVDAT 1 03-NOV-10 3NV5 0 JRNL AUTH W.YANG,S.G.BELL,H.WANG,W.ZHOU,M.BARTLAM,L.L.WONG,Z.RAO JRNL TITL THE STRUCTURE OF CYP101D2 UNVEILS A POTENTIAL PATH FOR JRNL TITL 2 SUBSTRATE ENTRY INTO THE ACTIVE SITE JRNL REF BIOCHEM.J. V. 433 85 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 20950270 JRNL DOI 10.1042/BJ20101017 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 19708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.74000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3309 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4494 ; 1.559 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;34.244 ;23.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;18.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2532 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1993 ; 0.680 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3218 ; 1.282 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1316 ; 2.137 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1276 ; 3.329 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LXH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 2.1M AMMONIUM SULFATE, 4% REMARK 280 PEG 400, PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.13667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.56833 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.56833 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.13667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -34 REMARK 465 GLY A -33 REMARK 465 SER A -32 REMARK 465 SER A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 SER A -24 REMARK 465 SER A -23 REMARK 465 GLY A -22 REMARK 465 LEU A -21 REMARK 465 VAL A -20 REMARK 465 PRO A -19 REMARK 465 ARG A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 THR A -12 REMARK 465 THR A -11 REMARK 465 ARG A -10 REMARK 465 MET A -9 REMARK 465 ASP A -8 REMARK 465 THR A -7 REMARK 465 PHE A -6 REMARK 465 ASN A -5 REMARK 465 PRO A -4 REMARK 465 GLN A -3 REMARK 465 GLU A -2 REMARK 465 SER A -1 REMARK 465 ARG A 0 REMARK 465 LEU A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 190 REMARK 465 ASN A 191 REMARK 465 THR A 192 REMARK 465 ILE A 415 REMARK 465 ALA A 416 REMARK 465 ARG A 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 118 OG SER A 233 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 311 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 406 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 81.11 -150.89 REMARK 500 TYR A 155 -64.44 -129.74 REMARK 500 ASP A 169 72.17 48.35 REMARK 500 GLU A 194 51.45 -108.52 REMARK 500 ASN A 232 36.33 -90.80 REMARK 500 LEU A 257 -80.93 -105.60 REMARK 500 HIS A 332 -67.71 -94.47 REMARK 500 ARG A 363 128.18 -34.46 REMARK 500 ASN A 408 82.26 64.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 418 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 364 SG REMARK 620 2 HEM A 418 NA 99.2 REMARK 620 3 HEM A 418 NB 88.3 88.1 REMARK 620 4 HEM A 418 NC 89.8 168.0 84.3 REMARK 620 5 HEM A 418 ND 101.2 91.5 170.4 94.5 REMARK 620 6 HOH A 568 O 172.2 82.6 84.2 87.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CAMPHOR-BOUND CYP101D2 DBREF 3NV5 A 2 417 UNP Q2G8A2 Q2G8A2_NOVAD 2 417 SEQADV 3NV5 MET A -34 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLY A -33 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -32 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -31 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -30 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -29 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -28 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -27 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -26 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -25 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -24 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -23 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLY A -22 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 LEU A -21 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 VAL A -20 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 PRO A -19 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 ARG A -18 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLY A -17 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -16 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 HIS A -15 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 MET A -14 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLY A -13 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 THR A -12 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 THR A -11 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 ARG A -10 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 MET A -9 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 ASP A -8 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 THR A -7 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 PHE A -6 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 ASN A -5 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 PRO A -4 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLN A -3 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 GLU A -2 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 SER A -1 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 ARG A 0 UNP Q2G8A2 EXPRESSION TAG SEQADV 3NV5 LEU A 1 UNP Q2G8A2 EXPRESSION TAG SEQRES 1 A 452 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 452 LEU VAL PRO ARG GLY SER HIS MET GLY THR THR ARG MET SEQRES 3 A 452 ASP THR PHE ASN PRO GLN GLU SER ARG LEU ALA THR ASN SEQRES 4 A 452 PHE ASP GLU ALA VAL ARG ALA LYS VAL GLU ARG PRO ALA SEQRES 5 A 452 ASN VAL PRO GLU ASP ARG VAL TYR GLU ILE ASP MET TYR SEQRES 6 A 452 ALA LEU ASN GLY ILE GLU ASP GLY TYR HIS GLU ALA TRP SEQRES 7 A 452 LYS LYS VAL GLN HIS PRO GLY ILE PRO ASP LEU ILE TRP SEQRES 8 A 452 THR PRO PHE THR GLY GLY HIS TRP ILE ALA THR ASN GLY SEQRES 9 A 452 ASP THR VAL LYS GLU VAL TYR SER ASP PRO THR ARG PHE SEQRES 10 A 452 SER SER GLU VAL ILE PHE LEU PRO LYS GLU ALA GLY GLU SEQRES 11 A 452 LYS TYR GLN MET VAL PRO THR LYS MET ASP PRO PRO GLU SEQRES 12 A 452 HIS THR PRO TYR ARG LYS ALA LEU ASP LYS GLY LEU ASN SEQRES 13 A 452 LEU ALA LYS ILE ARG LYS VAL GLU ASP LYS VAL ARG GLU SEQRES 14 A 452 VAL ALA SER SER LEU ILE ASP SER PHE ALA ALA ARG GLY SEQRES 15 A 452 GLU CYS ASP PHE ALA ALA GLU TYR ALA GLU LEU PHE PRO SEQRES 16 A 452 VAL HIS VAL PHE MET ALA LEU ALA ASP LEU PRO LEU GLU SEQRES 17 A 452 ASP ILE PRO VAL LEU SER GLU TYR ALA ARG GLN MET THR SEQRES 18 A 452 ARG PRO GLU GLY ASN THR PRO GLU GLU MET ALA THR ASP SEQRES 19 A 452 LEU GLU ALA GLY ASN ASN GLY PHE TYR ALA TYR VAL ASP SEQRES 20 A 452 PRO ILE ILE ARG ALA ARG VAL GLY GLY ASP GLY ASP ASP SEQRES 21 A 452 LEU ILE THR LEU MET VAL ASN SER GLU ILE ASN GLY GLU SEQRES 22 A 452 ARG ILE ALA HIS ASP LYS ALA GLN GLY LEU ILE SER LEU SEQRES 23 A 452 LEU LEU LEU GLY GLY LEU ASP THR VAL VAL ASN PHE LEU SEQRES 24 A 452 SER PHE PHE MET ILE HIS LEU ALA ARG HIS PRO GLU LEU SEQRES 25 A 452 VAL ALA GLU LEU ARG SER ASP PRO LEU LYS LEU MET ARG SEQRES 26 A 452 GLY ALA GLU GLU MET PHE ARG ARG PHE PRO VAL VAL SER SEQRES 27 A 452 GLU ALA ARG MET VAL ALA LYS ASP GLN GLU TYR LYS GLY SEQRES 28 A 452 VAL PHE LEU LYS ARG GLY ASP MET ILE LEU LEU PRO THR SEQRES 29 A 452 ALA LEU HIS GLY LEU ASP ASP ALA ALA ASN PRO GLU PRO SEQRES 30 A 452 TRP LYS LEU ASP PHE SER ARG ARG SER ILE SER HIS SER SEQRES 31 A 452 THR PHE GLY GLY GLY PRO HIS ARG CYS ALA GLY MET HIS SEQRES 32 A 452 LEU ALA ARG MET GLU VAL ILE VAL THR LEU GLU GLU TRP SEQRES 33 A 452 LEU LYS ARG ILE PRO GLU PHE SER PHE LYS GLU GLY GLU SEQRES 34 A 452 THR PRO ILE TYR HIS SER GLY ILE VAL ALA ALA VAL GLU SEQRES 35 A 452 ASN VAL PRO LEU VAL TRP PRO ILE ALA ARG HET HEM A 418 43 HET PEG A 419 7 HET PEG A 420 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 HOH *149(H2 O) HELIX 1 1 PRO A 20 VAL A 24 5 5 HELIX 2 2 GLY A 34 ASP A 37 5 4 HELIX 3 3 GLY A 38 LYS A 45 1 8 HELIX 4 4 PRO A 58 GLY A 62 5 5 HELIX 5 5 ASN A 68 SER A 77 1 10 HELIX 6 6 GLU A 108 ASN A 121 1 14 HELIX 7 7 ASN A 121 LYS A 127 1 7 HELIX 8 8 VAL A 128 SER A 142 1 15 HELIX 9 9 PHE A 143 ARG A 146 5 4 HELIX 10 10 PHE A 151 TYR A 155 1 5 HELIX 11 11 LEU A 158 ALA A 168 1 11 HELIX 12 12 PRO A 171 GLU A 173 5 3 HELIX 13 13 ASP A 174 ARG A 187 1 14 HELIX 14 14 MET A 196 VAL A 219 1 24 HELIX 15 15 ASP A 225 ASN A 232 1 8 HELIX 16 16 ALA A 241 GLY A 256 1 16 HELIX 17 17 LEU A 257 ARG A 273 1 17 HELIX 18 18 HIS A 274 ASP A 284 1 11 HELIX 19 19 ASP A 284 GLY A 291 1 8 HELIX 20 20 GLY A 291 PHE A 299 1 9 HELIX 21 21 THR A 329 LEU A 334 1 6 HELIX 22 22 GLY A 359 ARG A 363 5 5 HELIX 23 23 GLY A 366 ILE A 385 1 20 SHEET 1 A 5 LEU A 54 THR A 57 0 SHEET 2 A 5 HIS A 63 ALA A 66 -1 O HIS A 63 N THR A 57 SHEET 3 A 5 MET A 324 PRO A 328 1 O MET A 324 N TRP A 64 SHEET 4 A 5 SER A 303 VAL A 308 -1 N GLU A 304 O LEU A 327 SHEET 5 A 5 PHE A 82 SER A 83 -1 N SER A 83 O MET A 307 SHEET 1 B 3 GLU A 148 ASP A 150 0 SHEET 2 B 3 PRO A 410 VAL A 412 -1 O LEU A 411 N CYS A 149 SHEET 3 B 3 SER A 389 PHE A 390 -1 N SER A 389 O VAL A 412 SHEET 1 C 2 GLU A 234 ILE A 235 0 SHEET 2 C 2 GLU A 238 ARG A 239 -1 O GLU A 238 N ILE A 235 SHEET 1 D 2 GLN A 312 TYR A 314 0 SHEET 2 D 2 VAL A 317 LEU A 319 -1 O LEU A 319 N GLN A 312 SHEET 1 E 2 ILE A 397 HIS A 399 0 SHEET 2 E 2 ALA A 405 GLU A 407 -1 O ALA A 405 N HIS A 399 LINK SG CYS A 364 FE HEM A 418 1555 1555 2.26 LINK FE HEM A 418 O HOH A 568 1555 1555 2.16 CISPEP 1 LEU A 89 PRO A 90 0 3.66 CISPEP 2 VAL A 100 PRO A 101 0 7.50 CISPEP 3 PRO A 106 PRO A 107 0 13.01 CISPEP 4 PRO A 193 GLU A 194 0 -3.93 SITE 1 AC1 22 TYR A 76 HIS A 109 ARG A 113 LEU A 252 SITE 2 AC1 22 GLY A 255 GLY A 256 THR A 259 PHE A 263 SITE 3 AC1 22 GLU A 304 ARG A 306 THR A 356 PHE A 357 SITE 4 AC1 22 GLY A 358 HIS A 362 CYS A 364 GLY A 366 SITE 5 AC1 22 ALA A 370 GLU A 373 PEG A 419 HOH A 436 SITE 6 AC1 22 HOH A 565 HOH A 568 SITE 1 AC2 4 LEU A 251 GLU A 304 HEM A 418 HOH A 568 SITE 1 AC3 3 GLU A 41 LYS A 45 TYR A 210 CRYST1 86.653 86.653 124.705 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011540 0.006663 0.000000 0.00000 SCALE2 0.000000 0.013326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008019 0.00000