HEADER OXIDOREDUCTASE 08-JUL-10 3NVC TITLE CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE G106A MUTANT FROM TITLE 2 PSEUDOAMINOBACTER SALICYLATOXIDANS IN COMPLEX WITH SALICYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENTISATE 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDAMINOBACTER SALICYLATOXIDANS; SOURCE 3 ORGANISM_TAXID: 93369; SOURCE 4 STRAIN: BN12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA-BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,F.BRIGANTI,I.MATERA REVDAT 3 06-SEP-23 3NVC 1 REMARK SEQADV LINK REVDAT 2 19-APR-17 3NVC 1 JRNL REVDAT 1 13-JUL-11 3NVC 0 JRNL AUTH M.FERRARONI,I.MATERA,S.BURGER,S.REICHERT,L.STEIMER, JRNL AUTH 2 A.SCOZZAFAVA,A.STOLZ,F.BRIGANTI JRNL TITL THE SALICYLATE 1,2-DIOXYGENASE AS A MODEL FOR A CONVENTIONAL JRNL TITL 2 GENTISATE 1,2-DIOXYGENASE: CRYSTAL STRUCTURES OF THE G106A JRNL TITL 3 MUTANT AND ITS ADDUCTS WITH GENTISATE AND SALICYLATE. JRNL REF FEBS J. V. 280 1643 2013 JRNL REFN ISSN 1742-4658 JRNL PMID 23384287 JRNL DOI 10.1111/FEBS.12173 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.48000 REMARK 3 B22 (A**2) : 2.70000 REMARK 3 B33 (A**2) : -5.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2848 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3870 ; 1.877 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 7.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;35.914 ;23.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;17.988 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2222 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1738 ; 0.889 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2797 ; 1.631 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 2.424 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1072 ; 3.761 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 83.918 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : 0.47700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2PHD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG10000, PH 8.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.48850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.81300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.48850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.81300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.48850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.81300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.13650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.48850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.81300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.97700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 86.97700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 ASP A 194 REMARK 465 ARG A 195 REMARK 465 VAL A 196 REMARK 465 THR A 197 REMARK 465 LYS A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 15 CG SD CE REMARK 470 SER A 193 OG REMARK 470 ASP A 198 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE2 A 369 C1' SAL A 370 2.04 REMARK 500 O GLY A 316 O HOH A 476 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 84 70.73 -102.30 REMARK 500 VAL A 130 -60.02 -99.33 REMARK 500 TRP A 157 12.96 84.00 REMARK 500 ASP A 185 46.03 70.66 REMARK 500 TYR A 199 68.16 -107.58 REMARK 500 CYS A 212 33.26 -97.98 REMARK 500 ALA A 255 -47.69 -178.35 REMARK 500 ALA A 263 137.82 -172.21 REMARK 500 ASN A 315 24.22 48.42 REMARK 500 SER A 331 115.43 -31.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 369 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 NE2 118.2 REMARK 620 3 HIS A 160 NE2 91.5 103.4 REMARK 620 4 SAL A 370 O2' 143.6 97.8 84.2 REMARK 620 5 SAL A 370 O1' 81.8 155.2 89.7 62.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAL A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 373 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE SALICYLATE 1,2-DIOXYGENASE FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS REMARK 900 RELATED ID: 3NJZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS ADDUCTS WITH SALICYLATE REMARK 900 RELATED ID: 3NKT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS ADDUCTS WITH NAPHTHOATE REMARK 900 RELATED ID: 3NL1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS ADDUCTS WITH GENTISATE REMARK 900 RELATED ID: 3NST RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE G106A MUTANT FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS REMARK 900 RELATED ID: 3NW4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALICYLATE 1,2-DIOXYGENASE G106A MUTANT FROM REMARK 900 PSEUDOAMINOBACTER SALICYLATOXIDANS IN COMPLEX WITH GENTISATE DBREF 3NVC A 1 368 UNP Q67FT0 Q67FT0_9RHIZ 1 368 SEQADV 3NVC ALA A 106 UNP Q67FT0 GLY 106 ENGINEERED MUTATION SEQADV 3NVC MET A 163 UNP Q67FT0 HIS 163 CONFLICT SEQRES 1 A 368 MET GLN ASN GLU LYS LEU ASP HIS GLU SER VAL THR GLN SEQRES 2 A 368 ALA MET GLN PRO LYS ASP THR PRO GLU LEU ARG ALA LEU SEQRES 3 A 368 TYR LYS SER PHE GLU GLU GLU SER ILE ILE PRO LEU TRP SEQRES 4 A 368 THR GLN LEU GLY ASP LEU MET PRO ILE HIS PRO LYS SER SEQRES 5 A 368 LYS ALA VAL PRO HIS VAL TRP LYS TRP SER THR LEU LEU SEQRES 6 A 368 ARG LEU ALA ARG LYS SER GLY GLU LEU VAL PRO VAL GLY SEQRES 7 A 368 ARG GLY GLY GLU ARG ARG ALA LEU GLY LEU ALA ASN PRO SEQRES 8 A 368 GLY LEU GLY GLY ASN ALA TYR ILE SER PRO THR MET TRP SEQRES 9 A 368 ALA ALA ILE GLN TYR LEU GLY PRO ARG GLU THR ALA PRO SEQRES 10 A 368 GLU HIS ARG HIS SER GLN ASN ALA PHE ARG PHE VAL VAL SEQRES 11 A 368 GLU GLY GLU GLY VAL TRP THR VAL VAL ASN GLY ASP PRO SEQRES 12 A 368 VAL ARG MET SER ARG GLY ASP LEU LEU LEU THR PRO GLY SEQRES 13 A 368 TRP CYS PHE HIS GLY HIS MET ASN ASP THR ASP GLN PRO SEQRES 14 A 368 MET ALA TRP ILE ASP GLY LEU ASP ILE PRO PHE SER GLN SEQRES 15 A 368 GLN MET ASP VAL GLY PHE PHE GLU PHE GLY SER ASP ARG SEQRES 16 A 368 VAL THR ASP TYR ALA THR PRO ASN PHE SER ARG GLY GLU SEQRES 17 A 368 ARG LEU TRP CYS HIS PRO GLY LEU ARG PRO LEU SER GLY SEQRES 18 A 368 LEU GLN ASN THR VAL ALA SER PRO ILE GLY ALA TYR ARG SEQRES 19 A 368 TRP GLU PHE THR ASP ARG ALA LEU THR GLU GLN LEU LEU SEQRES 20 A 368 LEU GLU ASP GLU GLY GLN PRO ALA THR VAL ALA PRO GLY SEQRES 21 A 368 HIS ALA ALA ILE ARG TYR VAL ASN PRO THR THR GLY GLY SEQRES 22 A 368 ASP VAL MET PRO THR LEU ARG CYS GLU PHE HIS ARG LEU SEQRES 23 A 368 ARG ALA GLY THR GLU THR ALA THR ARG ASN GLU VAL GLY SEQRES 24 A 368 SER THR VAL PHE GLN VAL PHE GLU GLY ALA GLY ALA VAL SEQRES 25 A 368 VAL MET ASN GLY GLU THR THR LYS LEU GLU LYS GLY ASP SEQRES 26 A 368 MET PHE VAL VAL PRO SER TRP VAL PRO TRP SER LEU GLN SEQRES 27 A 368 ALA GLU THR GLN PHE ASP LEU PHE ARG PHE SER ASP ALA SEQRES 28 A 368 PRO ILE MET GLU ALA LEU SER PHE MET ARG THR LYS ILE SEQRES 29 A 368 GLU GLY GLN LYS HET FE2 A 369 1 HET SAL A 370 10 HET GOL A 371 6 HET GOL A 372 6 HET GOL A 373 6 HETNAM FE2 FE (II) ION HETNAM SAL 2-HYDROXYBENZOIC ACID HETNAM GOL GLYCEROL HETSYN SAL SALICYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 SAL C7 H6 O3 FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *173(H2 O) HELIX 1 1 THR A 20 SER A 34 1 15 HELIX 2 2 PRO A 37 GLN A 41 5 5 HELIX 3 3 LEU A 42 MET A 46 5 5 HELIX 4 4 LYS A 60 VAL A 75 1 16 HELIX 5 5 ASP A 177 ASP A 185 1 9 HELIX 6 6 SER A 205 CYS A 212 1 8 HELIX 7 7 PRO A 218 LEU A 222 5 5 HELIX 8 8 ARG A 234 GLU A 251 1 18 HELIX 9 9 ASP A 350 LEU A 357 1 8 SHEET 1 A 6 HIS A 57 TRP A 59 0 SHEET 2 A 6 MET A 326 VAL A 329 -1 O MET A 326 N TRP A 59 SHEET 3 A 6 THR A 301 GLU A 307 -1 N PHE A 303 O PHE A 327 SHEET 4 A 6 PHE A 343 SER A 349 -1 O PHE A 348 N VAL A 302 SHEET 5 A 6 ARG A 280 LEU A 286 -1 N HIS A 284 O LEU A 345 SHEET 6 A 6 HIS A 261 ARG A 265 -1 N ILE A 264 O PHE A 283 SHEET 1 B 6 ALA A 85 GLY A 87 0 SHEET 2 B 6 TRP A 104 LEU A 110 -1 O ILE A 107 N LEU A 86 SHEET 3 B 6 MET A 170 LEU A 176 -1 O MET A 170 N LEU A 110 SHEET 4 B 6 ALA A 125 GLU A 131 -1 N PHE A 128 O ILE A 173 SHEET 5 B 6 LEU A 151 THR A 154 -1 O LEU A 152 N ARG A 127 SHEET 6 B 6 ALA A 232 TYR A 233 -1 O TYR A 233 N LEU A 151 SHEET 1 C 2 HIS A 119 HIS A 121 0 SHEET 2 C 2 PHE A 189 PHE A 191 -1 O GLU A 190 N ARG A 120 SHEET 1 D 3 ASP A 142 MET A 146 0 SHEET 2 D 3 VAL A 135 VAL A 139 -1 N THR A 137 O VAL A 144 SHEET 3 D 3 HIS A 160 ASN A 164 -1 O GLY A 161 N VAL A 138 SHEET 1 E 2 ARG A 295 GLU A 297 0 SHEET 2 E 2 THR A 362 ILE A 364 -1 O LYS A 363 N ASN A 296 SHEET 1 F 3 GLU A 317 LEU A 321 0 SHEET 2 F 3 GLY A 310 MET A 314 -1 N GLY A 310 O LEU A 321 SHEET 3 F 3 TRP A 335 ALA A 339 -1 O GLN A 338 N ALA A 311 LINK NE2 HIS A 119 FE FE2 A 369 1555 1555 2.12 LINK NE2 HIS A 121 FE FE2 A 369 1555 1555 2.29 LINK NE2 HIS A 160 FE FE2 A 369 1555 1555 2.23 LINK FE FE2 A 369 O2' SAL A 370 1555 1555 2.08 LINK FE FE2 A 369 O1' SAL A 370 1555 1555 2.24 SITE 1 AC1 4 HIS A 119 HIS A 121 HIS A 160 SAL A 370 SITE 1 AC2 11 LEU A 38 MET A 46 GLN A 108 HIS A 119 SITE 2 AC2 11 HIS A 121 ARG A 127 HIS A 160 ASP A 174 SITE 3 AC2 11 FE2 A 369 HOH A 415 HOH A 537 SITE 1 AC3 9 LEU A 219 ARG A 265 GLU A 282 ARG A 295 SITE 2 AC3 9 GLU A 297 ARG A 347 HOH A 457 HOH A 484 SITE 3 AC3 9 HOH A 487 SITE 1 AC4 8 LEU A 38 GLN A 41 LEU A 42 GLY A 43 SITE 2 AC4 8 LEU A 45 ARG A 83 GOL A 373 HOH A 445 SITE 1 AC5 5 GLY A 43 MET A 46 ILE A 48 GOL A 372 SITE 2 AC5 5 HOH A 546 CRYST1 74.273 86.977 167.626 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005966 0.00000