HEADER TRANSFERASE 08-JUL-10 3NVS TITLE 1.02 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF 3-PHOSPHOSHIKIMATE 1- TITLE 2 CARBOXYVINYLTRANSFERASE FROM VIBRIO CHOLERAE IN COMPLEX WITH TITLE 3 SHIKIMATE-3-PHOSPHATE (PARTIALLY PHOTOLYZED) AND GLYPHOSATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSP SYNTHASE, COMPND 5 EPSPS; COMPND 6 EC: 2.5.1.19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: AROA, NP_231368, VC_1732; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 (MAGIC); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, INSIDE-OUT ALPHA-BETA BARREL, EPSP SYNTHASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,S.H.LIGHT,A.HALAVATY,G.SHUVALOVA,L.PAPAZISI,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 06-SEP-23 3NVS 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3NVS 1 REMARK REVDAT 1 21-JUL-10 3NVS 0 JRNL AUTH G.MINASOV,S.H.LIGHT,A.HALAVATY,G.SHUVALOVA,L.PAPAZISI, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.02 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF JRNL TITL 2 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE FROM VIBRIO JRNL TITL 3 CHOLERAE IN COMPLEX WITH SHIKIMATE-3-PHOSPHATE (PARTIALLY JRNL TITL 4 PHOTOLYZED) AND GLYPHOSATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 169410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 620 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 747 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.012 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3787 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2503 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5191 ; 1.542 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6186 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 5.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.345 ;25.183 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;10.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4403 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 735 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2379 ; 1.687 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 961 ; 2.137 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3877 ; 2.363 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 3.523 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 5.008 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3786 ; 1.808 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82648 REMARK 200 MONOCHROMATOR : SI {1,1,1} REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 178530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.020 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G6S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 4.0 MGR/ML, 0.25M SODIUM REMARK 280 CLORIDE, 0.01M TRIS-HCL (PH 8.3), 2MM GLYPHOSATE, 1MM SHIKIMATE- REMARK 280 3-PHOSPHATE; SCREEN: CLASSICS II (G12), 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1M HEPES (PH 7.5), 25% (W/V) PEG3350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.74200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 144 -104.44 -124.53 REMARK 500 GLU A 144 -51.97 -127.23 REMARK 500 ASN A 147 7.70 84.78 REMARK 500 TYR A 221 14.91 59.32 REMARK 500 TYR A 221 14.91 59.18 REMARK 500 LYS A 341 -145.94 -104.10 REMARK 500 SER A 398 -166.86 -174.06 REMARK 500 PHE A 414 69.04 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 430 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 123 OE1 REMARK 620 2 GLN A 145 OE1 175.5 REMARK 620 3 HOH A 871 O 92.5 83.3 REMARK 620 4 HOH A 901 O 84.5 97.4 96.3 REMARK 620 5 HOH A 927 O 85.9 92.8 92.1 167.5 REMARK 620 6 HOH A1041 O 89.8 94.4 177.7 84.1 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 431 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 608 O REMARK 620 2 HOH A 732 O 173.2 REMARK 620 3 HOH A 733 O 82.3 92.1 REMARK 620 4 HOH A 734 O 86.2 99.6 168.0 REMARK 620 5 HOH A 735 O 93.4 91.0 96.0 81.4 REMARK 620 6 HOH A1102 O 85.9 90.2 89.6 92.8 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 432 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 533 O REMARK 620 2 HOH A 740 O 85.2 REMARK 620 3 HOH A 741 O 94.9 86.0 REMARK 620 4 HOH A 742 O 85.7 170.9 95.1 REMARK 620 5 HOH A 743 O 174.5 92.0 89.6 97.0 REMARK 620 6 HOH A 744 O 90.6 87.7 171.2 92.1 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3P A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SKM A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GPJ A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 438 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90626 RELATED DB: TARGETDB DBREF 3NVS A 1 426 UNP Q9KRB0 AROA_VIBCH 1 426 SEQADV 3NVS MET A -23 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -22 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -21 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -20 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -19 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -18 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS HIS A -17 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS SER A -16 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS SER A -15 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS GLY A -14 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS VAL A -13 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS ASP A -12 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS LEU A -11 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS GLY A -10 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS THR A -9 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS GLU A -8 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS ASN A -7 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS LEU A -6 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS TYR A -5 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS PHE A -4 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS GLN A -3 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS SER A -2 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS ASN A -1 UNP Q9KRB0 EXPRESSION TAG SEQADV 3NVS ALA A 0 UNP Q9KRB0 EXPRESSION TAG SEQRES 1 A 450 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 450 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET GLU SEQRES 3 A 450 SER LEU THR LEU GLN PRO ILE GLU LEU ILE SER GLY GLU SEQRES 4 A 450 VAL ASN LEU PRO GLY SER LYS SER VAL SER ASN ARG ALA SEQRES 5 A 450 LEU LEU LEU ALA ALA LEU ALA SER GLY THR THR ARG LEU SEQRES 6 A 450 THR ASN LEU LEU ASP SER ASP ASP ILE ARG HIS MET LEU SEQRES 7 A 450 ASN ALA LEU THR LYS LEU GLY VAL ASN TYR ARG LEU SER SEQRES 8 A 450 ALA ASP LYS THR THR CYS GLU VAL GLU GLY LEU GLY GLN SEQRES 9 A 450 ALA PHE HIS THR THR GLN PRO LEU GLU LEU PHE LEU GLY SEQRES 10 A 450 ASN ALA GLY THR ALA MET ARG PRO LEU ALA ALA ALA LEU SEQRES 11 A 450 CYS LEU GLY GLN GLY ASP TYR VAL LEU THR GLY GLU PRO SEQRES 12 A 450 ARG MET LYS GLU ARG PRO ILE GLY HIS LEU VAL ASP ALA SEQRES 13 A 450 LEU ARG GLN ALA GLY ALA GLN ILE GLU TYR LEU GLU GLN SEQRES 14 A 450 GLU ASN PHE PRO PRO LEU ARG ILE GLN GLY THR GLY LEU SEQRES 15 A 450 GLN ALA GLY THR VAL THR ILE ASP GLY SER ILE SER SER SEQRES 16 A 450 GLN PHE LEU THR ALA PHE LEU MET SER ALA PRO LEU ALA SEQRES 17 A 450 GLN GLY LYS VAL THR ILE LYS ILE VAL GLY GLU LEU VAL SEQRES 18 A 450 SER LYS PRO TYR ILE ASP ILE THR LEU HIS ILE MET GLU SEQRES 19 A 450 GLN PHE GLY VAL GLN VAL ILE ASN HIS ASP TYR GLN GLU SEQRES 20 A 450 PHE VAL ILE PRO ALA GLY GLN SER TYR VAL SER PRO GLY SEQRES 21 A 450 GLN PHE LEU VAL GLU GLY ASP ALA SER SER ALA SER TYR SEQRES 22 A 450 PHE LEU ALA ALA ALA ALA ILE LYS GLY GLY GLU VAL LYS SEQRES 23 A 450 VAL THR GLY ILE GLY LYS ASN SER ILE GLN GLY ASP ILE SEQRES 24 A 450 GLN PHE ALA ASP ALA LEU GLU LYS MET GLY ALA GLN ILE SEQRES 25 A 450 GLU TRP GLY ASP ASP TYR VAL ILE ALA ARG ARG GLY GLU SEQRES 26 A 450 LEU ASN ALA VAL ASP LEU ASP PHE ASN HIS ILE PRO ASP SEQRES 27 A 450 ALA ALA MET THR ILE ALA THR THR ALA LEU PHE ALA LYS SEQRES 28 A 450 GLY THR THR ALA ILE ARG ASN VAL TYR ASN TRP ARG VAL SEQRES 29 A 450 LYS GLU THR ASP ARG LEU ALA ALA MET ALA THR GLU LEU SEQRES 30 A 450 ARG LYS VAL GLY ALA THR VAL GLU GLU GLY GLU ASP PHE SEQRES 31 A 450 ILE VAL ILE THR PRO PRO THR LYS LEU ILE HIS ALA ALA SEQRES 32 A 450 ILE ASP THR TYR ASP ASP HIS ARG MET ALA MET CYS PHE SEQRES 33 A 450 SER LEU VAL ALA LEU SER ASP THR PRO VAL THR ILE ASN SEQRES 34 A 450 ASP PRO LYS CYS THR SER LYS THR PHE PRO ASP TYR PHE SEQRES 35 A 450 ASP LYS PHE ALA GLN LEU SER ARG HET S3P A 427 16 HET SKM A 428 12 HET GPJ A 429 10 HET MG A 430 1 HET MG A 431 1 HET MG A 432 1 HET CL A 433 1 HET CL A 434 1 HET CL A 435 1 HET CL A 436 1 HET EPE A 437 21 HET PO4 A 438 5 HETNAM S3P SHIKIMATE-3-PHOSPHATE HETNAM SKM (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC HETNAM 2 SKM ACID HETNAM GPJ GLYPHOSATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PO4 PHOSPHATE ION HETSYN SKM SHIKIMATE HETSYN EPE HEPES FORMUL 2 S3P C7 H11 O8 P FORMUL 3 SKM C7 H10 O5 FORMUL 4 GPJ C3 H9 N O5 P 1+ FORMUL 5 MG 3(MG 2+) FORMUL 8 CL 4(CL 1-) FORMUL 12 EPE C8 H18 N2 O4 S FORMUL 13 PO4 O4 P 3- FORMUL 14 HOH *747(H2 O) HELIX 1 1 SER A 21 ALA A 35 1 15 HELIX 2 2 SER A 47 LEU A 60 1 14 HELIX 3 3 ALA A 95 LEU A 106 1 12 HELIX 4 4 GLU A 118 ARG A 124 5 7 HELIX 5 5 ILE A 126 ALA A 136 1 11 HELIX 6 6 SER A 171 ALA A 181 1 11 HELIX 7 7 PRO A 182 ALA A 184 5 3 HELIX 8 8 SER A 198 PHE A 212 1 15 HELIX 9 9 ASP A 243 GLY A 258 1 16 HELIX 10 10 GLN A 272 ILE A 275 5 4 HELIX 11 11 GLN A 276 GLY A 285 1 10 HELIX 12 12 ALA A 315 ALA A 323 1 9 HELIX 13 13 LEU A 324 ALA A 326 5 3 HELIX 14 14 VAL A 335 LYS A 341 5 7 HELIX 15 15 ASP A 344 VAL A 356 1 13 HELIX 16 16 ASP A 385 LEU A 394 1 10 HELIX 17 17 VAL A 395 SER A 398 5 4 HELIX 18 18 PRO A 407 THR A 413 5 7 HELIX 19 19 ASP A 416 LEU A 424 1 9 SHEET 1 A 3 SER A 3 LEU A 6 0 SHEET 2 A 3 VAL A 402 ASN A 405 -1 O ILE A 404 N LEU A 4 SHEET 3 A 3 ALA A 379 ILE A 380 1 N ILE A 380 O THR A 403 SHEET 1 B 2 LEU A 11 ILE A 12 0 SHEET 2 B 2 SER A 425 ARG A 426 -1 O ARG A 426 N LEU A 11 SHEET 1 C 4 GLY A 14 ASN A 17 0 SHEET 2 C 4 GLU A 260 THR A 264 1 O THR A 264 N VAL A 16 SHEET 3 C 4 TYR A 294 ARG A 298 -1 O VAL A 295 N VAL A 263 SHEET 4 C 4 GLN A 287 TRP A 290 -1 N GLU A 289 O ILE A 296 SHEET 1 D 4 ASN A 63 LEU A 66 0 SHEET 2 D 4 CYS A 73 GLU A 76 -1 O GLU A 76 N ASN A 63 SHEET 3 D 4 THR A 38 THR A 42 -1 N LEU A 41 O CYS A 73 SHEET 4 D 4 GLN A 237 LEU A 239 1 O PHE A 238 N ARG A 40 SHEET 1 E 4 LEU A 88 PHE A 91 0 SHEET 2 E 4 ASP A 112 THR A 116 1 O VAL A 114 N LEU A 90 SHEET 3 E 4 LEU A 151 GLN A 154 -1 O ILE A 153 N TYR A 113 SHEET 4 E 4 GLN A 139 TYR A 142 -1 N GLU A 141 O ARG A 152 SHEET 1 F 4 GLY A 161 ILE A 165 0 SHEET 2 F 4 VAL A 188 ILE A 192 1 O LYS A 191 N VAL A 163 SHEET 3 F 4 GLU A 223 ILE A 226 -1 O PHE A 224 N ILE A 190 SHEET 4 F 4 ILE A 217 HIS A 219 -1 N ILE A 217 O VAL A 225 SHEET 1 G 4 ASP A 306 ASP A 308 0 SHEET 2 G 4 THR A 330 ARG A 333 1 O ARG A 333 N LEU A 307 SHEET 3 G 4 PHE A 366 THR A 370 -1 O ILE A 369 N THR A 330 SHEET 4 G 4 THR A 359 GLU A 362 -1 N THR A 359 O THR A 370 LINK OE1AGLU A 123 MG A MG A 430 1555 1555 2.02 LINK OE1AGLN A 145 MG A MG A 430 1555 1555 2.08 LINK MG A MG A 430 O HOH A 871 1555 1555 2.04 LINK MG A MG A 430 O HOH A 901 1555 1555 2.08 LINK MG A MG A 430 O AHOH A 927 1555 1555 2.04 LINK MG A MG A 430 O AHOH A1041 1555 1555 2.12 LINK MG A MG A 431 O AHOH A 608 1555 1555 2.13 LINK MG A MG A 431 O HOH A 732 1555 1555 1.98 LINK MG A MG A 431 O HOH A 733 1555 1555 2.00 LINK MG A MG A 431 O AHOH A 734 1555 1555 2.00 LINK MG A MG A 431 O HOH A 735 1555 1555 2.16 LINK MG A MG A 431 O HOH A1102 1555 1555 2.11 LINK MG A MG A 432 O AHOH A 533 1555 1555 2.07 LINK MG A MG A 432 O HOH A 740 1555 1555 2.16 LINK MG A MG A 432 O AHOH A 741 1555 1555 1.97 LINK MG A MG A 432 O AHOH A 742 1555 1555 1.90 LINK MG A MG A 432 O HOH A 743 1555 1555 2.17 LINK MG A MG A 432 O AHOH A 744 1555 1555 2.06 CISPEP 1 PRO A 149 PRO A 150 0 1.93 CISPEP 2 GLY A 258 GLY A 259 0 -2.61 SITE 1 AC1 16 LYS A 22 SER A 23 ARG A 27 THR A 97 SITE 2 AC1 16 SER A 170 SER A 171 GLN A 172 SER A 198 SITE 3 AC1 16 TYR A 201 ASP A 314 ASN A 337 LYS A 341 SITE 4 AC1 16 GPJ A 429 HOH A 503 HOH A 725 HOH A 826 SITE 1 AC2 11 LYS A 22 SER A 23 ARG A 27 THR A 97 SITE 2 AC2 11 GLN A 172 TYR A 201 ASP A 314 LYS A 341 SITE 3 AC2 11 GPJ A 429 PO4 A 438 HOH A 503 SITE 1 AC3 15 LYS A 22 ASN A 94 GLY A 96 ARG A 124 SITE 2 AC3 15 GLN A 172 ASP A 314 GLU A 342 ARG A 345 SITE 3 AC3 15 HIS A 386 ARG A 387 LYS A 412 S3P A 427 SITE 4 AC3 15 SKM A 428 HOH A 604 HOH A 826 SITE 1 AC4 7 GLU A 123 GLN A 145 HOH A 753 HOH A 871 SITE 2 AC4 7 HOH A 901 HOH A 927 HOH A1041 SITE 1 AC5 6 HOH A 608 HOH A 732 HOH A 733 HOH A 734 SITE 2 AC5 6 HOH A 735 HOH A1102 SITE 1 AC6 8 HOH A 524 HOH A 533 HOH A 740 HOH A 741 SITE 2 AC6 8 HOH A 742 HOH A 743 HOH A 744 HOH A 953 SITE 1 AC7 3 ASP A 293 ARG A 354 VAL A 360 SITE 1 AC8 3 ASN A 17 LYS A 420 GLN A 423 SITE 1 AC9 4 ALA A 378 ALA A 379 HOH A 579 HOH A 971 SITE 1 BC1 4 ARG A 354 GLU A 362 HOH A 745 HOH A 866 SITE 1 BC2 6 LYS A 268 ASP A 279 TRP A 290 HOH A 738 SITE 2 BC2 6 HOH A 751 HOH A 861 SITE 1 BC3 9 SER A 170 SER A 171 VAL A 197 SER A 198 SITE 2 BC3 9 ASN A 337 LYS A 341 SKM A 428 HOH A 725 SITE 3 BC3 9 HOH A 826 CRYST1 43.866 87.484 49.994 90.00 105.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022797 0.000000 0.006219 0.00000 SCALE2 0.000000 0.011431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020733 0.00000