HEADER TRANSFERASE 12-JUL-10 3NX3 TITLE CRYSTAL STRUCTURE OF ACETYLORNITHINE AMINOTRANSFERASE (ARGD) FROM TITLE 2 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLORNITHINE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACOAT; COMPND 5 EC: 2.6.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: ARGD, CJ0227; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL KEYWDS CSGID, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, 3-LAYER(ABA) SANDWICH, ACETYLORNITHINE KEYWDS 3 AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ANDERSON,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,W.F.ANDERSON, AUTHOR 2 A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 17-NOV-10 3NX3 1 HEADER REVDAT 1 25-AUG-10 3NX3 0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 68039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4228 - 3.8754 1.00 6861 362 0.1511 0.1881 REMARK 3 2 3.8754 - 3.0771 1.00 6602 347 0.1383 0.1679 REMARK 3 3 3.0771 - 2.6884 1.00 6488 342 0.1552 0.1917 REMARK 3 4 2.6884 - 2.4427 1.00 6483 341 0.1549 0.2030 REMARK 3 5 2.4427 - 2.2677 1.00 6484 340 0.1506 0.2110 REMARK 3 6 2.2677 - 2.1341 1.00 6405 338 0.1463 0.1902 REMARK 3 7 2.1341 - 2.0272 0.99 6410 339 0.1526 0.2052 REMARK 3 8 2.0272 - 1.9390 0.99 6386 335 0.1620 0.2213 REMARK 3 9 1.9390 - 1.8643 0.98 6303 333 0.1774 0.2356 REMARK 3 10 1.8643 - 1.8000 0.97 6211 329 0.2050 0.2623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 56.35 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29780 REMARK 3 B22 (A**2) : -2.19930 REMARK 3 B33 (A**2) : 0.90150 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6144 REMARK 3 ANGLE : 1.040 8259 REMARK 3 CHIRALITY : 0.077 911 REMARK 3 PLANARITY : 0.004 1064 REMARK 3 DIHEDRAL : 11.820 2325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 16:102) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7899 -3.0799 -40.8929 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0616 REMARK 3 T33: 0.0707 T12: 0.0012 REMARK 3 T13: 0.0109 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.3108 L22: 0.6967 REMARK 3 L33: 0.4378 L12: -0.0705 REMARK 3 L13: -0.1974 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0340 S13: -0.0018 REMARK 3 S21: -0.0608 S22: -0.0050 S23: -0.0542 REMARK 3 S31: -0.1017 S32: 0.0204 S33: -0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 103:161) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1705 -23.8423 -23.9248 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1351 REMARK 3 T33: 0.1091 T12: 0.0224 REMARK 3 T13: 0.0193 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.3145 L22: 0.5829 REMARK 3 L33: 0.6777 L12: 0.2176 REMARK 3 L13: 0.4397 L23: 0.1391 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.1061 S13: -0.1289 REMARK 3 S21: 0.1319 S22: 0.0583 S23: -0.1272 REMARK 3 S31: 0.0877 S32: 0.1066 S33: 0.0332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 162:280) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1556 -24.0897 -35.3401 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.0708 REMARK 3 T33: 0.0840 T12: -0.0083 REMARK 3 T13: 0.0274 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.7575 L22: 1.0398 REMARK 3 L33: 1.0636 L12: -0.1521 REMARK 3 L13: -0.1117 L23: -0.4146 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.0182 S13: -0.0232 REMARK 3 S21: 0.0185 S22: 0.0372 S23: 0.1210 REMARK 3 S31: 0.0635 S32: -0.1028 S33: -0.0165 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 281:395) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9387 -16.8889 -51.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0442 REMARK 3 T33: 0.0802 T12: 0.0136 REMARK 3 T13: 0.0407 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 0.9151 REMARK 3 L33: 0.6171 L12: -0.0832 REMARK 3 L13: -0.3685 L23: 0.1993 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: 0.0021 S13: -0.0886 REMARK 3 S21: -0.1080 S22: 0.0084 S23: -0.1228 REMARK 3 S31: 0.0041 S32: 0.0602 S33: 0.0253 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 16:102) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5243 6.4349 -29.0529 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0767 REMARK 3 T33: 0.0934 T12: -0.0102 REMARK 3 T13: -0.0036 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.6693 L22: 0.8457 REMARK 3 L33: 1.3229 L12: -0.4305 REMARK 3 L13: -0.1336 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0662 S13: 0.0655 REMARK 3 S21: 0.0528 S22: -0.0001 S23: -0.0610 REMARK 3 S31: -0.1963 S32: 0.0098 S33: 0.0074 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 103:161) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5647 -14.6687 -12.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.1944 REMARK 3 T33: 0.0896 T12: 0.0065 REMARK 3 T13: -0.0100 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.5997 L22: 0.5203 REMARK 3 L33: 0.4965 L12: 0.4649 REMARK 3 L13: 0.4714 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.2532 S13: -0.0181 REMARK 3 S21: 0.2085 S22: -0.1098 S23: -0.0197 REMARK 3 S31: 0.0935 S32: -0.0784 S33: 0.0606 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 162:280) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4715 -3.1055 -9.9715 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.2151 REMARK 3 T33: 0.0917 T12: -0.0201 REMARK 3 T13: -0.0654 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.8585 L22: 1.5035 REMARK 3 L33: 0.7700 L12: -0.0047 REMARK 3 L13: 0.2348 L23: -0.7765 REMARK 3 S TENSOR REMARK 3 S11: 0.0929 S12: -0.1951 S13: 0.0239 REMARK 3 S21: 0.2681 S22: -0.1570 S23: -0.2136 REMARK 3 S31: -0.0994 S32: 0.2106 S33: 0.0720 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 281:395) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5160 12.8828 -12.6905 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.1971 REMARK 3 T33: 0.1092 T12: 0.0598 REMARK 3 T13: 0.0335 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 1.3243 L22: 0.6970 REMARK 3 L33: 1.2399 L12: -0.0245 REMARK 3 L13: 0.8707 L23: 0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.5396 S13: 0.2094 REMARK 3 S21: 0.2284 S22: -0.0056 S23: 0.0600 REMARK 3 S31: -0.2756 S32: -0.2864 S33: 0.0853 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NX3 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB060387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) DIAMOND LAUE MONOCHROMATOR REMARK 200 OPTICS : BERYLLIUM LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.740 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200MM MAGNESIUM CHLORIDE, REMARK 280 100MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.55500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.17000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 107.17000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.55500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 MSE A 3 REMARK 465 ASP A 4 REMARK 465 TYR A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 MSE B 3 REMARK 465 ASP B 4 REMARK 465 TYR B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 GLN B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 465 ILE B 11 REMARK 465 ILE B 12 REMARK 465 PRO B 13 REMARK 465 THR B 14 REMARK 465 TYR B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 16 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 10 -122.03 -146.81 REMARK 500 SER A 72 158.60 80.69 REMARK 500 LEU A 157 -152.45 -101.34 REMARK 500 ALA A 247 -154.62 -165.58 REMARK 500 LYS A 248 -102.26 55.98 REMARK 500 LYS A 327 -69.47 -96.50 REMARK 500 ASN A 366 50.77 -168.80 REMARK 500 SER B 72 160.81 78.19 REMARK 500 LEU B 157 -154.44 -98.89 REMARK 500 ALA B 247 -153.11 -165.34 REMARK 500 LYS B 248 -102.71 56.43 REMARK 500 LYS B 327 -69.86 -91.28 REMARK 500 ASN B 366 50.43 -163.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 320 O REMARK 620 2 CYS A 326 O 107.1 REMARK 620 3 PHE A 323 O 86.8 86.9 REMARK 620 4 HOH A 656 O 77.4 171.0 85.5 REMARK 620 5 HOH A 814 O 143.2 92.1 126.1 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 396 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 655 O REMARK 620 2 HOH A 541 O 87.3 REMARK 620 3 HOH A 565 O 94.4 87.2 REMARK 620 4 HOH A 826 O 98.5 174.0 93.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 397 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 400 O REMARK 620 2 HOH A 457 O 105.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 399 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90574 RELATED DB: TARGETDB DBREF 3NX3 A 3 395 UNP Q9PIR7 ARGD_CAMJE 1 393 DBREF 3NX3 B 3 395 UNP Q9PIR7 ARGD_CAMJE 1 393 SEQADV 3NX3 MSE A 1 UNP Q9PIR7 EXPRESSION TAG SEQADV 3NX3 LYS A 2 UNP Q9PIR7 EXPRESSION TAG SEQADV 3NX3 MSE B 1 UNP Q9PIR7 EXPRESSION TAG SEQADV 3NX3 LYS B 2 UNP Q9PIR7 EXPRESSION TAG SEQRES 1 A 395 MSE LYS MSE ASP TYR LYS GLU GLN SER HIS ILE ILE PRO SEQRES 2 A 395 THR TYR LYS ARG PHE ASP ILE VAL LEU GLU LYS GLY GLN SEQRES 3 A 395 GLY VAL TYR LEU PHE ASP ASP LYS ALA LYS LYS TYR LEU SEQRES 4 A 395 ASP PHE SER SER GLY ILE GLY VAL CYS ALA LEU GLY TYR SEQRES 5 A 395 ASN HIS ALA LYS PHE ASN ALA LYS ILE LYS ALA GLN VAL SEQRES 6 A 395 ASP LYS LEU LEU HIS THR SER ASN LEU TYR TYR ASN GLU SEQRES 7 A 395 ASN ILE ALA ALA ALA ALA LYS ASN LEU ALA LYS ALA SER SEQRES 8 A 395 ALA LEU GLU ARG VAL PHE PHE THR ASN SER GLY THR GLU SEQRES 9 A 395 SER ILE GLU GLY ALA MSE LYS THR ALA ARG LYS TYR ALA SEQRES 10 A 395 PHE ASN LYS GLY VAL LYS GLY GLY GLN PHE ILE ALA PHE SEQRES 11 A 395 LYS HIS SER PHE HIS GLY ARG THR LEU GLY ALA LEU SER SEQRES 12 A 395 LEU THR ALA ASN GLU LYS TYR GLN LYS PRO PHE LYS PRO SEQRES 13 A 395 LEU ILE SER GLY VAL LYS PHE ALA LYS TYR ASN ASP ILE SEQRES 14 A 395 SER SER VAL GLU LYS LEU VAL ASN GLU LYS THR CYS ALA SEQRES 15 A 395 ILE ILE LEU GLU SER VAL GLN GLY GLU GLY GLY ILE ASN SEQRES 16 A 395 PRO ALA ASN LYS ASP PHE TYR LYS ALA LEU ARG LYS LEU SEQRES 17 A 395 CYS ASP GLU LYS ASP ILE LEU LEU ILE ALA ASP GLU ILE SEQRES 18 A 395 GLN CYS GLY MSE GLY ARG SER GLY LYS PHE PHE ALA TYR SEQRES 19 A 395 GLU HIS ALA GLN ILE LEU PRO ASP ILE MSE THR SER ALA SEQRES 20 A 395 LYS ALA LEU GLY CYS GLY LEU SER VAL GLY ALA PHE VAL SEQRES 21 A 395 ILE ASN GLN LYS VAL ALA SER ASN SER LEU GLU ALA GLY SEQRES 22 A 395 ASP HIS GLY SER THR TYR GLY GLY ASN PRO LEU VAL CYS SEQRES 23 A 395 ALA GLY VAL ASN ALA VAL PHE GLU ILE PHE LYS GLU GLU SEQRES 24 A 395 LYS ILE LEU GLU ASN VAL ASN LYS LEU THR PRO TYR LEU SEQRES 25 A 395 GLU GLN SER LEU ASP GLU LEU ILE ASN GLU PHE ASP PHE SEQRES 26 A 395 CYS LYS LYS ARG LYS GLY LEU GLY PHE MSE GLN GLY LEU SEQRES 27 A 395 SER LEU ASP LYS SER VAL LYS VAL ALA LYS VAL ILE GLN SEQRES 28 A 395 LYS CYS GLN GLU ASN ALA LEU LEU LEU ILE SER CYS GLY SEQRES 29 A 395 GLU ASN ASP LEU ARG PHE LEU PRO PRO LEU ILE LEU GLN SEQRES 30 A 395 LYS GLU HIS ILE ASP GLU MSE SER GLU LYS LEU ARG LYS SEQRES 31 A 395 ALA LEU LYS SER PHE SEQRES 1 B 395 MSE LYS MSE ASP TYR LYS GLU GLN SER HIS ILE ILE PRO SEQRES 2 B 395 THR TYR LYS ARG PHE ASP ILE VAL LEU GLU LYS GLY GLN SEQRES 3 B 395 GLY VAL TYR LEU PHE ASP ASP LYS ALA LYS LYS TYR LEU SEQRES 4 B 395 ASP PHE SER SER GLY ILE GLY VAL CYS ALA LEU GLY TYR SEQRES 5 B 395 ASN HIS ALA LYS PHE ASN ALA LYS ILE LYS ALA GLN VAL SEQRES 6 B 395 ASP LYS LEU LEU HIS THR SER ASN LEU TYR TYR ASN GLU SEQRES 7 B 395 ASN ILE ALA ALA ALA ALA LYS ASN LEU ALA LYS ALA SER SEQRES 8 B 395 ALA LEU GLU ARG VAL PHE PHE THR ASN SER GLY THR GLU SEQRES 9 B 395 SER ILE GLU GLY ALA MSE LYS THR ALA ARG LYS TYR ALA SEQRES 10 B 395 PHE ASN LYS GLY VAL LYS GLY GLY GLN PHE ILE ALA PHE SEQRES 11 B 395 LYS HIS SER PHE HIS GLY ARG THR LEU GLY ALA LEU SER SEQRES 12 B 395 LEU THR ALA ASN GLU LYS TYR GLN LYS PRO PHE LYS PRO SEQRES 13 B 395 LEU ILE SER GLY VAL LYS PHE ALA LYS TYR ASN ASP ILE SEQRES 14 B 395 SER SER VAL GLU LYS LEU VAL ASN GLU LYS THR CYS ALA SEQRES 15 B 395 ILE ILE LEU GLU SER VAL GLN GLY GLU GLY GLY ILE ASN SEQRES 16 B 395 PRO ALA ASN LYS ASP PHE TYR LYS ALA LEU ARG LYS LEU SEQRES 17 B 395 CYS ASP GLU LYS ASP ILE LEU LEU ILE ALA ASP GLU ILE SEQRES 18 B 395 GLN CYS GLY MSE GLY ARG SER GLY LYS PHE PHE ALA TYR SEQRES 19 B 395 GLU HIS ALA GLN ILE LEU PRO ASP ILE MSE THR SER ALA SEQRES 20 B 395 LYS ALA LEU GLY CYS GLY LEU SER VAL GLY ALA PHE VAL SEQRES 21 B 395 ILE ASN GLN LYS VAL ALA SER ASN SER LEU GLU ALA GLY SEQRES 22 B 395 ASP HIS GLY SER THR TYR GLY GLY ASN PRO LEU VAL CYS SEQRES 23 B 395 ALA GLY VAL ASN ALA VAL PHE GLU ILE PHE LYS GLU GLU SEQRES 24 B 395 LYS ILE LEU GLU ASN VAL ASN LYS LEU THR PRO TYR LEU SEQRES 25 B 395 GLU GLN SER LEU ASP GLU LEU ILE ASN GLU PHE ASP PHE SEQRES 26 B 395 CYS LYS LYS ARG LYS GLY LEU GLY PHE MSE GLN GLY LEU SEQRES 27 B 395 SER LEU ASP LYS SER VAL LYS VAL ALA LYS VAL ILE GLN SEQRES 28 B 395 LYS CYS GLN GLU ASN ALA LEU LEU LEU ILE SER CYS GLY SEQRES 29 B 395 GLU ASN ASP LEU ARG PHE LEU PRO PRO LEU ILE LEU GLN SEQRES 30 B 395 LYS GLU HIS ILE ASP GLU MSE SER GLU LYS LEU ARG LYS SEQRES 31 B 395 ALA LEU LYS SER PHE MODRES 3NX3 MSE A 110 MET SELENOMETHIONINE MODRES 3NX3 MSE A 225 MET SELENOMETHIONINE MODRES 3NX3 MSE A 244 MET SELENOMETHIONINE MODRES 3NX3 MSE A 335 MET SELENOMETHIONINE MODRES 3NX3 MSE A 384 MET SELENOMETHIONINE MODRES 3NX3 MSE B 110 MET SELENOMETHIONINE MODRES 3NX3 MSE B 225 MET SELENOMETHIONINE MODRES 3NX3 MSE B 244 MET SELENOMETHIONINE MODRES 3NX3 MSE B 335 MET SELENOMETHIONINE MODRES 3NX3 MSE B 384 MET SELENOMETHIONINE HET MSE A 110 8 HET MSE A 225 8 HET MSE A 244 8 HET MSE A 335 8 HET MSE A 384 8 HET MSE B 110 8 HET MSE B 225 8 HET MSE B 244 8 HET MSE B 335 8 HET MSE B 384 8 HET MG A 396 1 HET MG A 397 1 HET MG A 398 1 HET MG A 399 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *804(H2 O) HELIX 1 1 PRO A 13 ARG A 17 5 5 HELIX 2 2 SER A 42 VAL A 47 1 6 HELIX 3 3 HIS A 54 ASP A 66 1 13 HELIX 4 4 ASN A 77 ALA A 92 1 16 HELIX 5 5 SER A 101 LYS A 120 1 20 HELIX 6 6 THR A 138 SER A 143 1 6 HELIX 7 7 ASN A 147 LYS A 152 1 6 HELIX 8 8 PRO A 153 LYS A 155 5 3 HELIX 9 9 ASP A 168 LYS A 174 1 7 HELIX 10 10 ASN A 198 ASP A 213 1 16 HELIX 11 11 PHE A 232 GLN A 238 5 7 HELIX 12 12 ALA A 247 GLY A 251 5 5 HELIX 13 13 ASN A 262 LEU A 270 1 9 HELIX 14 14 ASN A 282 GLU A 299 1 18 HELIX 15 15 LYS A 300 PHE A 323 1 24 HELIX 16 16 LYS A 345 ASN A 356 1 12 HELIX 17 17 GLN A 377 SER A 394 1 18 HELIX 18 18 SER B 42 VAL B 47 1 6 HELIX 19 19 HIS B 54 ASP B 66 1 13 HELIX 20 20 ASN B 77 ALA B 92 1 16 HELIX 21 21 SER B 101 LYS B 120 1 20 HELIX 22 22 THR B 138 LEU B 144 1 7 HELIX 23 23 ASN B 147 LYS B 152 1 6 HELIX 24 24 PRO B 153 LYS B 155 5 3 HELIX 25 25 ASP B 168 VAL B 176 1 9 HELIX 26 26 ASN B 198 ASP B 213 1 16 HELIX 27 27 PHE B 232 GLN B 238 5 7 HELIX 28 28 ALA B 247 GLY B 251 5 5 HELIX 29 29 ASN B 262 SER B 267 1 6 HELIX 30 30 SER B 269 ASP B 274 1 6 HELIX 31 31 ASN B 282 GLU B 299 1 18 HELIX 32 32 LYS B 300 PHE B 323 1 24 HELIX 33 33 LYS B 345 ASN B 356 1 12 HELIX 34 34 GLN B 377 SER B 394 1 18 SHEET 1 A 4 LEU A 22 GLN A 26 0 SHEET 2 A 4 TYR A 29 ASP A 32 -1 O PHE A 31 N LYS A 24 SHEET 3 A 4 LYS A 37 ASP A 40 -1 O TYR A 38 N LEU A 30 SHEET 4 A 4 LEU A 358 LEU A 359 1 O LEU A 359 N LEU A 39 SHEET 1 B 7 ARG A 95 THR A 99 0 SHEET 2 B 7 GLY A 257 ILE A 261 -1 O GLY A 257 N THR A 99 SHEET 3 B 7 ILE A 243 SER A 246 -1 N MSE A 244 O VAL A 260 SHEET 4 B 7 LEU A 215 ASP A 219 1 N ALA A 218 O ILE A 243 SHEET 5 B 7 THR A 180 GLU A 186 1 N LEU A 185 O ASP A 219 SHEET 6 B 7 GLN A 126 PHE A 130 1 N GLN A 126 O CYS A 181 SHEET 7 B 7 VAL A 161 ALA A 164 1 O ALA A 164 N ALA A 129 SHEET 1 C 2 VAL A 188 GLN A 189 0 SHEET 2 C 2 ASN A 195 PRO A 196 -1 O ASN A 195 N GLN A 189 SHEET 1 D 4 CYS A 326 LEU A 332 0 SHEET 2 D 4 MSE A 335 LEU A 340 -1 O SER A 339 N LYS A 327 SHEET 3 D 4 ASP A 367 PHE A 370 -1 O PHE A 370 N GLN A 336 SHEET 4 D 4 ILE A 361 CYS A 363 -1 N ILE A 361 O ARG A 369 SHEET 1 E 4 LEU B 22 GLN B 26 0 SHEET 2 E 4 TYR B 29 ASP B 32 -1 O PHE B 31 N LYS B 24 SHEET 3 E 4 LYS B 37 ASP B 40 -1 O TYR B 38 N LEU B 30 SHEET 4 E 4 LEU B 358 LEU B 359 1 O LEU B 359 N LEU B 39 SHEET 1 F 7 ARG B 95 THR B 99 0 SHEET 2 F 7 GLY B 257 ILE B 261 -1 O GLY B 257 N THR B 99 SHEET 3 F 7 ILE B 243 SER B 246 -1 N MSE B 244 O VAL B 260 SHEET 4 F 7 LEU B 215 ASP B 219 1 N ALA B 218 O ILE B 243 SHEET 5 F 7 THR B 180 GLU B 186 1 N LEU B 185 O ASP B 219 SHEET 6 F 7 GLN B 126 PHE B 130 1 N GLN B 126 O CYS B 181 SHEET 7 F 7 VAL B 161 ALA B 164 1 O ALA B 164 N ALA B 129 SHEET 1 G 2 VAL B 188 GLN B 189 0 SHEET 2 G 2 ASN B 195 PRO B 196 -1 O ASN B 195 N GLN B 189 SHEET 1 H 4 CYS B 326 LEU B 332 0 SHEET 2 H 4 MSE B 335 LEU B 340 -1 O SER B 339 N LYS B 327 SHEET 3 H 4 ASP B 367 PHE B 370 -1 O PHE B 370 N GLN B 336 SHEET 4 H 4 ILE B 361 CYS B 363 -1 N ILE B 361 O ARG B 369 LINK C ALA A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LYS A 111 1555 1555 1.33 LINK C GLY A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N GLY A 226 1555 1555 1.33 LINK C ILE A 243 N MSE A 244 1555 1555 1.32 LINK C MSE A 244 N THR A 245 1555 1555 1.33 LINK C PHE A 334 N MSE A 335 1555 1555 1.32 LINK C MSE A 335 N GLN A 336 1555 1555 1.33 LINK C GLU A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N SER A 385 1555 1555 1.33 LINK C ALA B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N LYS B 111 1555 1555 1.33 LINK C GLY B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N GLY B 226 1555 1555 1.33 LINK C ILE B 243 N MSE B 244 1555 1555 1.33 LINK C MSE B 244 N THR B 245 1555 1555 1.33 LINK C PHE B 334 N MSE B 335 1555 1555 1.33 LINK C MSE B 335 N GLN B 336 1555 1555 1.33 LINK C GLU B 383 N MSE B 384 1555 1555 1.33 LINK C MSE B 384 N SER B 385 1555 1555 1.34 LINK O ILE A 320 MG MG A 399 1555 1555 2.26 LINK MG MG A 396 O HOH A 655 1555 1555 2.31 LINK MG MG A 396 O HOH A 541 1555 1555 2.40 LINK MG MG A 396 O HOH A 565 1555 1555 2.41 LINK O CYS A 326 MG MG A 399 1555 1555 2.46 LINK O PHE A 323 MG MG A 399 1555 1555 2.50 LINK MG MG A 396 O HOH A 826 1555 1555 2.55 LINK MG MG A 399 O HOH A 656 1555 1555 2.63 LINK MG MG A 399 O HOH A 814 1555 1555 2.75 LINK MG MG A 397 O HOH A 400 1555 1555 2.93 LINK MG MG A 397 O HOH A 457 1555 1555 2.95 LINK MG MG A 398 O HOH A 747 1555 1555 2.96 CISPEP 1 LYS A 155 PRO A 156 0 0.83 CISPEP 2 LYS B 155 PRO B 156 0 2.05 SITE 1 AC1 6 HOH A 457 HOH A 541 HOH A 565 HOH A 597 SITE 2 AC1 6 HOH A 655 HOH A 826 SITE 1 AC2 3 LYS A 378 HOH A 400 HOH A 457 SITE 1 AC3 3 ASN A 198 PHE A 201 HOH A 747 SITE 1 AC4 6 ILE A 320 PHE A 323 ASP A 324 CYS A 326 SITE 2 AC4 6 HOH A 656 HOH A 814 CRYST1 51.110 66.160 214.340 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004665 0.00000