HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-JUL-10 3NY6 TITLE CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX TITLE 2 WITH INHIBITOR V30 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLIX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CATALYTIC DOMAIN, RESIDUES 459-665; COMPND 5 EC: 2.4.2.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: TP; SOURCE 5 GENE: CHXA, TOXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS ALPHA-BETA COMPLEX, ADP-RIBOSYL TRANSFERASE, NAD+ BINDING, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.MERRILL,R.JORGENSEN REVDAT 4 06-SEP-23 3NY6 1 REMARK SEQADV REVDAT 3 07-MAR-18 3NY6 1 REMARK REVDAT 2 06-APR-11 3NY6 1 JRNL REVDAT 1 29-DEC-10 3NY6 0 JRNL AUTH Z.TURGEON,R.JORGENSEN,D.VISSCHEDYK,P.R.EDWARDS,S.LEGREE, JRNL AUTH 2 C.MCGREGOR,R.J.FIELDHOUSE,D.MANGROO,M.SCHAPIRA,A.R.MERRILL JRNL TITL NEWLY DISCOVERED AND CHARACTERIZED ANTIVIRULENCE COMPOUNDS JRNL TITL 2 INHIBIT BACTERIAL MONO-ADP-RIBOSYLTRANSFERASE TOXINS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 55 983 2011 JRNL REFN ISSN 0066-4804 JRNL PMID 21135177 JRNL DOI 10.1128/AAC.01164-10 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.738 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1628 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2216 ; 1.363 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 5.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;31.332 ;23.544 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;13.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.869 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1264 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 985 ; 0.622 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1588 ; 1.061 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 643 ; 1.869 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 627 ; 3.032 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 425 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7620 12.3990 -19.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1405 REMARK 3 T33: 0.1894 T12: 0.0331 REMARK 3 T13: 0.0465 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.0092 L22: 20.7008 REMARK 3 L33: 4.3616 L12: -0.3095 REMARK 3 L13: 0.0774 L23: 0.0669 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0222 S13: 0.0284 REMARK 3 S21: -0.6813 S22: -0.1913 S23: -0.8186 REMARK 3 S31: 0.4060 S32: 0.3522 S33: 0.1335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8280 -2.2950 -21.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.0708 REMARK 3 T33: 0.0569 T12: 0.0018 REMARK 3 T13: 0.0424 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.6890 L22: 6.1574 REMARK 3 L33: 5.2085 L12: -0.7968 REMARK 3 L13: 0.1794 L23: -2.9136 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: 0.2942 S13: 0.1016 REMARK 3 S21: -0.4753 S22: -0.0332 S23: -0.1933 REMARK 3 S31: 0.0260 S32: 0.0632 S33: -0.0718 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 453 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9700 4.9150 -10.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.0498 REMARK 3 T33: 0.0335 T12: -0.0040 REMARK 3 T13: 0.0131 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.9625 L22: 2.5693 REMARK 3 L33: 1.1984 L12: -0.0084 REMARK 3 L13: 0.0151 L23: -0.4896 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.1587 S13: 0.1816 REMARK 3 S21: 0.1438 S22: 0.0137 S23: 0.0179 REMARK 3 S31: -0.1113 S32: -0.0153 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 513 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6120 25.7700 -9.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.2518 T22: 0.2033 REMARK 3 T33: 0.0717 T12: 0.0186 REMARK 3 T13: 0.0596 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 11.0922 L22: 31.1726 REMARK 3 L33: 14.5907 L12: -4.6587 REMARK 3 L13: 3.6431 L23: 13.3897 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: -0.4170 S13: -0.1775 REMARK 3 S21: 2.0968 S22: -0.3021 S23: 0.8390 REMARK 3 S31: 0.3265 S32: -0.2294 S33: 0.4437 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 514 A 531 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4020 19.7180 -16.2290 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0757 REMARK 3 T33: 0.1156 T12: 0.0107 REMARK 3 T13: -0.0219 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2296 L22: 4.9100 REMARK 3 L33: 0.4313 L12: -1.0374 REMARK 3 L13: 0.1566 L23: -0.6889 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0039 S13: 0.0539 REMARK 3 S21: 0.0130 S22: -0.0076 S23: -0.0930 REMARK 3 S31: -0.1455 S32: -0.0908 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 532 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9080 -10.8370 -7.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.0552 REMARK 3 T33: 0.0339 T12: -0.0111 REMARK 3 T13: -0.0250 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 5.3869 L22: 3.2825 REMARK 3 L33: 0.5366 L12: 0.4357 REMARK 3 L13: -0.9119 L23: -1.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.0934 S13: -0.3314 REMARK 3 S21: 0.0043 S22: -0.0462 S23: -0.1718 REMARK 3 S31: 0.1011 S32: -0.0071 S33: 0.0631 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 546 A 562 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7970 -7.4320 0.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0844 REMARK 3 T33: 0.0499 T12: -0.0232 REMARK 3 T13: 0.0355 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.9737 L22: 3.0569 REMARK 3 L33: 7.6057 L12: -1.2461 REMARK 3 L13: 3.5954 L23: -1.8495 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.3056 S13: 0.0676 REMARK 3 S21: 0.2066 S22: 0.0623 S23: 0.3083 REMARK 3 S31: -0.1460 S32: -0.2153 S33: -0.0901 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 563 A 598 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1190 -2.2990 -5.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0455 REMARK 3 T33: 0.0080 T12: -0.0002 REMARK 3 T13: -0.0074 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.5620 L22: 1.1262 REMARK 3 L33: 0.1947 L12: 0.7326 REMARK 3 L13: -0.5685 L23: 0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: -0.2031 S13: 0.0411 REMARK 3 S21: 0.1179 S22: -0.0559 S23: -0.0005 REMARK 3 S31: -0.0246 S32: 0.0349 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 599 A 616 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9580 9.9650 -24.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0855 REMARK 3 T33: 0.0664 T12: -0.0227 REMARK 3 T13: -0.0085 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 1.9933 L22: 11.9080 REMARK 3 L33: 4.3029 L12: -1.8235 REMARK 3 L13: -0.1216 L23: 4.9085 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.1927 S13: 0.1527 REMARK 3 S21: -0.5497 S22: -0.0065 S23: 0.3582 REMARK 3 S31: -0.2343 S32: -0.1213 S33: 0.0174 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 617 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8960 -9.1810 -17.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.0537 REMARK 3 T33: 0.0457 T12: -0.0004 REMARK 3 T13: -0.0245 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 6.0174 L22: 7.4963 REMARK 3 L33: 11.2220 L12: 4.8232 REMARK 3 L13: -6.7555 L23: -7.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.2937 S12: 0.3309 S13: -0.2250 REMARK 3 S21: -0.4033 S22: 0.2261 S23: 0.1092 REMARK 3 S31: 0.5035 S32: -0.4256 S33: 0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03796 REMARK 200 MONOCHROMATOR : BENT SI (111) CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING REMARK 200 OPTICS : MULTILAYER MIRROR, CURVED TO REMARK 200 FOCUS IN THE VERTICAL (R = 400 M) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 2Q6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG-8000, 0.02 M KH2PO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.74450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.30150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.48650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.30150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.74450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.48650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 423 REMARK 465 SER A 424 REMARK 465 PRO A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 480 REMARK 465 ASN A 481 REMARK 465 ASN A 482 REMARK 465 THR A 483 REMARK 465 GLU A 484 REMARK 465 LYS A 630 REMARK 465 ASP A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 473 133.46 -176.22 REMARK 500 ARG A 566 -114.61 -100.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V30 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q6M RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE PJ34 INHIBITOR REMARK 900 RELATED ID: 3ESS RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE 1,8-NAPHTHALIMIDE INHIBITOR REMARK 900 RELATED ID: 3KI0 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-D REMARK 900 RELATED ID: 3KI1 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-F REMARK 900 RELATED ID: 3KI2 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-G REMARK 900 RELATED ID: 3KI3 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-H REMARK 900 RELATED ID: 3KI4 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-P REMARK 900 RELATED ID: 3KI5 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-M REMARK 900 RELATED ID: 3KI6 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-L REMARK 900 RELATED ID: 3KI7 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-I DBREF 3NY6 A 427 633 UNP Q5EK40 Q5EK40_VIBCH 459 665 SEQADV 3NY6 GLY A 423 UNP Q5EK40 EXPRESSION TAG SEQADV 3NY6 SER A 424 UNP Q5EK40 EXPRESSION TAG SEQADV 3NY6 HIS A 425 UNP Q5EK40 EXPRESSION TAG SEQADV 3NY6 MET A 426 UNP Q5EK40 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA VAL ILE THR PRO GLN GLY VAL THR SEQRES 2 A 211 ASN TRP THR TYR GLN GLU LEU GLU ALA THR HIS GLN ALA SEQRES 3 A 211 LEU THR ARG GLU GLY TYR VAL PHE VAL GLY TYR HIS GLY SEQRES 4 A 211 THR ASN HIS VAL ALA ALA GLN THR ILE VAL ASN ARG ILE SEQRES 5 A 211 ALA PRO VAL PRO ARG GLY ASN ASN THR GLU ASN GLU GLU SEQRES 6 A 211 LYS TRP GLY GLY LEU TYR VAL ALA THR HIS ALA GLU VAL SEQRES 7 A 211 ALA HIS GLY TYR ALA ARG ILE LYS GLU GLY THR GLY GLU SEQRES 8 A 211 TYR GLY LEU PRO THR ARG ALA GLU ARG ASP ALA ARG GLY SEQRES 9 A 211 VAL MET LEU ARG VAL TYR ILE PRO ARG ALA SER LEU GLU SEQRES 10 A 211 ARG PHE TYR ARG THR ASN THR PRO LEU GLU ASN ALA GLU SEQRES 11 A 211 GLU HIS ILE THR GLN VAL ILE GLY HIS SER LEU PRO LEU SEQRES 12 A 211 ARG ASN GLU ALA PHE THR GLY PRO GLU SER ALA GLY GLY SEQRES 13 A 211 GLU ASP GLU THR VAL ILE GLY TRP ASP MET ALA ILE HIS SEQRES 14 A 211 ALA VAL ALA ILE PRO SER THR ILE PRO GLY ASN ALA TYR SEQRES 15 A 211 GLU GLU LEU ALA ILE ASP GLU GLU ALA VAL ALA LYS GLU SEQRES 16 A 211 GLN SER ILE SER THR LYS PRO PRO TYR LYS GLU ARG LYS SEQRES 17 A 211 ASP GLU LEU HET GOL A3001 6 HET GOL A3002 6 HET V30 A 1 20 HET PO4 A 2 5 HETNAM GOL GLYCEROL HETNAM V30 2-[(5,6-DIMETHYL-4-OXO-3,4-DIHYDROTHIENO[2,3- HETNAM 2 V30 D]PYRIMIDIN-2-YL)SULFANYL]-N-(2-HYDROXYETHYL)ACETAMIDE HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 V30 C12 H15 N3 O3 S2 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *266(H2 O) HELIX 1 1 THR A 438 GLU A 452 1 15 HELIX 2 2 ASN A 463 ARG A 473 1 11 HELIX 3 3 GLU A 486 GLY A 490 5 5 HELIX 4 4 HIS A 497 GLY A 503 1 7 HELIX 5 5 GLY A 512 LEU A 516 5 5 HELIX 6 6 THR A 518 ALA A 524 1 7 HELIX 7 7 ALA A 536 GLU A 539 5 4 HELIX 8 8 PRO A 547 ASN A 550 5 4 HELIX 9 9 ALA A 551 GLY A 560 1 10 HELIX 10 10 GLY A 585 ILE A 590 1 6 HELIX 11 11 ASP A 610 GLN A 618 1 9 HELIX 12 12 SER A 619 SER A 621 5 3 SHEET 1 A 2 VAL A 428 THR A 430 0 SHEET 2 A 2 GLY A 433 THR A 435 -1 O THR A 435 N VAL A 428 SHEET 1 B 3 TYR A 454 THR A 462 0 SHEET 2 B 3 VAL A 527 PRO A 534 -1 O VAL A 527 N THR A 462 SHEET 3 B 3 VAL A 593 PRO A 600 -1 O ILE A 595 N ARG A 530 SHEET 1 C 4 LEU A 492 VAL A 494 0 SHEET 2 C 4 ASP A 580 ILE A 584 -1 O ILE A 584 N LEU A 492 SHEET 3 C 4 ALA A 569 PRO A 573 -1 N PHE A 570 O VAL A 583 SHEET 4 C 4 PHE A 541 ARG A 543 1 N TYR A 542 O ALA A 569 CISPEP 1 LEU A 563 PRO A 564 0 7.65 SITE 1 AC1 10 VAL A 471 ASN A 472 ARG A 473 GLU A 549 SITE 2 AC1 10 ASN A 550 ALA A 576 HOH A1002 HOH A1021 SITE 3 AC1 10 HOH A1044 HOH A1097 SITE 1 AC2 8 HIS A 446 PHE A 456 SER A 619 ILE A 620 SITE 2 AC2 8 SER A 621 THR A 622 HOH A1051 HOH A1157 SITE 1 AC3 8 PO4 A 2 HIS A 460 GLY A 461 TYR A 493 SITE 2 AC3 8 ALA A 501 TYR A 504 GLU A 581 HOH A1249 SITE 1 AC4 6 V30 A 1 HIS A 460 THR A 462 ILE A 470 SITE 2 AC4 6 HOH A1113 HOH A1180 CRYST1 35.489 64.973 86.603 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011547 0.00000