data_3NYG # _entry.id 3NYG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NYG pdb_00003nyg 10.2210/pdb3nyg/pdb RCSB RCSB060436 ? ? WWPDB D_1000060436 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 3 0 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 5 'Structure model' Advisory 9 5 'Structure model' 'Atomic model' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_validate_polymer_linkage 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 5 'Structure model' atom_site 10 5 'Structure model' atom_site_anisotrop 11 5 'Structure model' pdbx_validate_polymer_linkage 12 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 26 5 'Structure model' '_atom_site.B_iso_or_equiv' 27 5 'Structure model' '_atom_site.Cartn_x' 28 5 'Structure model' '_atom_site.Cartn_y' 29 5 'Structure model' '_atom_site.Cartn_z' 30 5 'Structure model' '_atom_site_anisotrop.U[1][1]' 31 5 'Structure model' '_atom_site_anisotrop.U[1][2]' 32 5 'Structure model' '_atom_site_anisotrop.U[1][3]' 33 5 'Structure model' '_atom_site_anisotrop.U[2][2]' 34 5 'Structure model' '_atom_site_anisotrop.U[2][3]' 35 5 'Structure model' '_atom_site_anisotrop.U[3][3]' 36 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 37 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NYG _pdbx_database_status.recvd_initial_deposition_date 2010-07-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NXE . unspecified PDB 3NWQ . unspecified PDB 3NXN . unspecified PDB 3NWX . unspecified PDB 3HAW . unspecified PDB 3HBO . unspecified PDB 3IAW . unspecified PDB 3HDK . unspecified PDB 3HAU . unspecified PDB 3FSM . unspecified PDB 3HLO . unspecified PDB 3KA2 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Torbeev, V.Y.' 1 'Kent, S.B.H.' 2 # _citation.id primary _citation.title 'Protein conformational dynamics in the mechanism of HIV-1 protease catalysis.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 20982 _citation.page_last 20987 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22158985 _citation.pdbx_database_id_DOI 10.1073/pnas.1111202108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Torbeev, V.Y.' 1 ? primary 'Raghuraman, H.' 2 ? primary 'Hamelberg, D.' 3 ? primary 'Tonelli, M.' 4 ? primary 'Westler, W.M.' 5 ? primary 'Perozo, E.' 6 ? primary 'Kent, S.B.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn protease 10761.608 2 3.4.23.16 ? ? ? 2 non-polymer syn 'N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide' 770.983 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEE(NLE)NLPG(YCM)WKPK(NLE)IGGI(GOA)GFIKVRQYDQIPV EI(ABA)GHKAIGTVLVGPTPVNIIGRNLLTQIG(ABA)TLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEELNLPGCWKPKLIGGIXGFIKVRQYDQIPVEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide' 2NC 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 ARG n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 NLE n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 YCM n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 NLE n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GOA n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 PRO n 1 64 VAL n 1 65 GLU n 1 66 ILE n 1 67 ABA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ABA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemical protein synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2NC peptide-like . 'N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide' p2/NC 'C35 H68 N11 O8 1' 770.983 ABA 'L-peptide linking' n 'ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOA non-polymer . 'GLYCOLIC ACID' 'HYDROXYACETIC ACID; HYDROXYETHANOIC ACID' 'C2 H4 O3' 76.051 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YCM 'L-peptide linking' n 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' CYSTEINE-S-ACETAMIDE 'C5 H10 N2 O3 S' 178.209 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 NLE 36 36 36 NLE NLE A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 YCM 41 41 41 YCM YCM A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 NLE 46 46 46 NLE NLE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GOA 51 51 51 GOA MSE A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ABA 67 67 67 ABA ABA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ABA 95 95 95 ABA ABA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 NLE 36 36 36 NLE NLE B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 YCM 41 41 41 YCM YCM B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 NLE 46 46 46 NLE NLE B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GOA 51 51 51 GOA MSE B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ABA 67 67 67 ABA ABA B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 ABA 95 95 95 ABA ABA B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC 1 100 1 2NC 2NC A . D 3 SO4 1 501 501 SO4 SO4 A . E 3 SO4 1 502 502 SO4 SO4 B . F 3 SO4 1 503 503 SO4 SO4 B . G 4 HOH 1 101 101 HOH HOH A . G 4 HOH 2 103 103 HOH HOH A . G 4 HOH 3 105 105 HOH HOH A . G 4 HOH 4 106 106 HOH HOH A . G 4 HOH 5 108 108 HOH HOH A . G 4 HOH 6 109 109 HOH HOH A . G 4 HOH 7 113 113 HOH HOH A . G 4 HOH 8 116 116 HOH HOH A . G 4 HOH 9 117 117 HOH HOH A . G 4 HOH 10 119 119 HOH HOH A . G 4 HOH 11 120 120 HOH HOH A . G 4 HOH 12 122 122 HOH HOH A . G 4 HOH 13 123 123 HOH HOH A . G 4 HOH 14 124 124 HOH HOH A . G 4 HOH 15 125 125 HOH HOH A . G 4 HOH 16 126 126 HOH HOH A . G 4 HOH 17 128 128 HOH HOH A . G 4 HOH 18 129 129 HOH HOH A . G 4 HOH 19 132 132 HOH HOH A . G 4 HOH 20 135 135 HOH HOH A . G 4 HOH 21 142 142 HOH HOH A . G 4 HOH 22 143 143 HOH HOH A . G 4 HOH 23 146 146 HOH HOH A . G 4 HOH 24 147 147 HOH HOH A . G 4 HOH 25 148 148 HOH HOH A . G 4 HOH 26 151 151 HOH HOH A . G 4 HOH 27 153 153 HOH HOH A . G 4 HOH 28 301 301 HOH HOH A . G 4 HOH 29 302 4 HOH HOH A . G 4 HOH 30 303 5 HOH HOH A . G 4 HOH 31 304 7 HOH HOH A . G 4 HOH 32 305 10 HOH HOH A . G 4 HOH 33 306 12 HOH HOH A . G 4 HOH 34 307 14 HOH HOH A . G 4 HOH 35 308 15 HOH HOH A . G 4 HOH 36 309 16 HOH HOH A . G 4 HOH 37 310 17 HOH HOH A . G 4 HOH 38 311 18 HOH HOH A . G 4 HOH 39 312 21 HOH HOH A . G 4 HOH 40 313 23 HOH HOH A . G 4 HOH 41 314 24 HOH HOH A . G 4 HOH 42 315 26 HOH HOH A . G 4 HOH 43 316 27 HOH HOH A . G 4 HOH 44 317 28 HOH HOH A . G 4 HOH 45 318 32 HOH HOH A . G 4 HOH 46 319 33 HOH HOH A . G 4 HOH 47 320 34 HOH HOH A . G 4 HOH 48 321 36 HOH HOH A . G 4 HOH 49 322 39 HOH HOH A . G 4 HOH 50 323 42 HOH HOH A . G 4 HOH 51 324 44 HOH HOH A . G 4 HOH 52 325 45 HOH HOH A . G 4 HOH 53 326 46 HOH HOH A . G 4 HOH 54 327 48 HOH HOH A . G 4 HOH 55 328 50 HOH HOH A . G 4 HOH 56 329 53 HOH HOH A . G 4 HOH 57 330 54 HOH HOH A . G 4 HOH 58 331 55 HOH HOH A . G 4 HOH 59 332 57 HOH HOH A . G 4 HOH 60 333 58 HOH HOH A . G 4 HOH 61 334 59 HOH HOH A . G 4 HOH 62 335 62 HOH HOH A . G 4 HOH 63 336 64 HOH HOH A . G 4 HOH 64 337 66 HOH HOH A . G 4 HOH 65 338 67 HOH HOH A . G 4 HOH 66 339 68 HOH HOH A . G 4 HOH 67 340 69 HOH HOH A . G 4 HOH 68 341 73 HOH HOH A . G 4 HOH 69 342 76 HOH HOH A . G 4 HOH 70 343 77 HOH HOH A . G 4 HOH 71 344 79 HOH HOH A . G 4 HOH 72 345 80 HOH HOH A . G 4 HOH 73 346 83 HOH HOH A . G 4 HOH 74 347 85 HOH HOH A . G 4 HOH 75 349 97 HOH HOH A . G 4 HOH 76 350 99 HOH HOH A . H 4 HOH 1 100 100 HOH HOH B . H 4 HOH 2 101 1 HOH HOH B . H 4 HOH 3 102 102 HOH HOH B . H 4 HOH 4 103 2 HOH HOH B . H 4 HOH 5 104 104 HOH HOH B . H 4 HOH 6 105 3 HOH HOH B . H 4 HOH 7 106 6 HOH HOH B . H 4 HOH 8 107 107 HOH HOH B . H 4 HOH 9 108 8 HOH HOH B . H 4 HOH 10 109 9 HOH HOH B . H 4 HOH 11 110 110 HOH HOH B . H 4 HOH 12 111 111 HOH HOH B . H 4 HOH 13 112 112 HOH HOH B . H 4 HOH 14 113 11 HOH HOH B . H 4 HOH 15 114 114 HOH HOH B . H 4 HOH 16 115 115 HOH HOH B . H 4 HOH 17 116 13 HOH HOH B . H 4 HOH 18 117 19 HOH HOH B . H 4 HOH 19 118 118 HOH HOH B . H 4 HOH 20 119 20 HOH HOH B . H 4 HOH 21 120 22 HOH HOH B . H 4 HOH 22 121 121 HOH HOH B . H 4 HOH 23 122 25 HOH HOH B . H 4 HOH 24 123 29 HOH HOH B . H 4 HOH 25 124 30 HOH HOH B . H 4 HOH 26 125 31 HOH HOH B . H 4 HOH 27 126 35 HOH HOH B . H 4 HOH 28 127 127 HOH HOH B . H 4 HOH 29 128 37 HOH HOH B . H 4 HOH 30 129 38 HOH HOH B . H 4 HOH 31 130 130 HOH HOH B . H 4 HOH 32 131 131 HOH HOH B . H 4 HOH 33 132 40 HOH HOH B . H 4 HOH 34 133 133 HOH HOH B . H 4 HOH 35 134 134 HOH HOH B . H 4 HOH 36 135 41 HOH HOH B . H 4 HOH 37 136 136 HOH HOH B . H 4 HOH 38 137 137 HOH HOH B . H 4 HOH 39 138 138 HOH HOH B . H 4 HOH 40 139 139 HOH HOH B . H 4 HOH 41 140 140 HOH HOH B . H 4 HOH 42 141 141 HOH HOH B . H 4 HOH 43 142 43 HOH HOH B . H 4 HOH 44 143 47 HOH HOH B . H 4 HOH 45 144 144 HOH HOH B . H 4 HOH 46 145 145 HOH HOH B . H 4 HOH 47 146 49 HOH HOH B . H 4 HOH 48 147 51 HOH HOH B . H 4 HOH 49 148 52 HOH HOH B . H 4 HOH 50 149 149 HOH HOH B . H 4 HOH 51 150 150 HOH HOH B . H 4 HOH 52 151 56 HOH HOH B . H 4 HOH 53 152 152 HOH HOH B . H 4 HOH 54 153 60 HOH HOH B . H 4 HOH 55 154 61 HOH HOH B . H 4 HOH 56 155 63 HOH HOH B . H 4 HOH 57 156 65 HOH HOH B . H 4 HOH 58 157 70 HOH HOH B . H 4 HOH 59 158 71 HOH HOH B . H 4 HOH 60 159 72 HOH HOH B . H 4 HOH 61 160 74 HOH HOH B . H 4 HOH 62 161 75 HOH HOH B . H 4 HOH 63 162 78 HOH HOH B . H 4 HOH 64 163 81 HOH HOH B . H 4 HOH 65 164 82 HOH HOH B . H 4 HOH 66 165 84 HOH HOH B . H 4 HOH 67 166 86 HOH HOH B . H 4 HOH 68 167 87 HOH HOH B . H 4 HOH 69 168 88 HOH HOH B . H 4 HOH 70 169 89 HOH HOH B . H 4 HOH 71 170 90 HOH HOH B . H 4 HOH 72 171 91 HOH HOH B . H 4 HOH 73 172 92 HOH HOH B . H 4 HOH 74 173 93 HOH HOH B . H 4 HOH 75 174 94 HOH HOH B . H 4 HOH 76 175 95 HOH HOH B . H 4 HOH 77 176 98 HOH HOH B . H 4 HOH 78 348 96 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Locally 'data collection' 'modified Blu-Ice GUI interface to EPICS control' ? 1 MOLREP phasing 'v. 9.2' ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3NYG _cell.length_a 51.303 _cell.length_b 57.682 _cell.length_c 61.745 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NYG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NYG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 42.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;0.1 M Citrate, 0.2 M Sodium Phosphate, 30% (w/v) Ammonium Sulfate, 10% (v/v) DMSO, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-08-10 _diffrn_detector.details ;Si(111) Double Crystal Monochrometer. Adjustable focusing mirrors in K-B geomet ry ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal cryo-cooled Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97934 # _reflns.entry_id 3NYG _reflns.observed_criterion_sigma_I 24.9 _reflns.observed_criterion_sigma_F 24.9 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.45 _reflns.number_obs 33147 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.654 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NYG _refine.ls_number_reflns_obs 31395 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 98.94 _refine.ls_R_factor_obs 0.18735 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18590 _refine.ls_R_factor_R_free 0.21595 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1670 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 21.569 _refine.aniso_B[1][1] 1.15 _refine.aniso_B[2][2] -0.55 _refine.aniso_B[3][3] -0.59 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.075 _refine.overall_SU_ML 0.047 _refine.overall_SU_B 2.407 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1518 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 69 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1741 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 1617 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1087 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.682 2.002 ? 2180 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.905 2.997 ? 2676 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.363 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.359 24.828 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.318 15.000 ? 282 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.935 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 256 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1705 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 269 'X-RAY DIFFRACTION' ? r_nbd_refined 0.262 0.200 ? 236 'X-RAY DIFFRACTION' ? r_nbd_other 0.205 0.200 ? 1089 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.177 0.200 ? 755 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 866 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.113 0.200 ? 72 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.095 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.179 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.097 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.176 1.500 ? 1030 'X-RAY DIFFRACTION' ? r_mcbond_other 0.316 1.500 ? 416 'X-RAY DIFFRACTION' ? r_mcangle_it 1.752 2.000 ? 1634 'X-RAY DIFFRACTION' ? r_scbond_it 2.640 3.000 ? 650 'X-RAY DIFFRACTION' ? r_scangle_it 4.028 4.500 ? 546 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.446 _refine_ls_shell.d_res_low 1.483 _refine_ls_shell.number_reflns_R_work 2041 _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.percent_reflns_obs 87.82 _refine_ls_shell.R_factor_R_free 0.257 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3NYG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NYG _struct.title ;X-ray structure of ester chemical analogue [O-Gly51,O-Gly51']HIV-1 protease complexed with MVT-101 inhibitor ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NYG _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' _struct_keywords.text 'beta-barrel, hydrolase-hydrolase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NYG _struct_ref.pdbx_db_accession 3NYG _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NYG A 1 ? 99 ? 3NYG 1 ? 99 ? 1 99 2 1 3NYG B 1 ? 99 ? 3NYG 1 ? 99 ? 1 99 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4930 ? 1 MORE -42 ? 1 'SSA (A^2)' 9600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 35 C ? ? ? 1_555 A NLE 36 N ? ? A GLU 35 A NLE 36 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A NLE 36 C ? ? ? 1_555 A ASN 37 N ? ? A NLE 36 A ASN 37 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A GLY 40 C ? ? ? 1_555 A YCM 41 N ? ? A GLY 40 A YCM 41 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A YCM 41 C ? ? ? 1_555 A TRP 42 N ? ? A YCM 41 A TRP 42 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A LYS 45 C ? ? ? 1_555 A NLE 46 N ? ? A LYS 45 A NLE 46 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale6 covale both ? A NLE 46 C ? ? ? 1_555 A ILE 47 N ? ? A NLE 46 A ILE 47 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale both ? A ILE 50 C ? ? ? 1_555 A GOA 51 O2 ? ? A ILE 50 A GOA 51 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale8 covale both ? A GOA 51 C ? ? ? 1_555 A GLY 52 N ? ? A GOA 51 A GLY 52 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A ILE 66 C ? ? ? 1_555 A ABA 67 N ? ? A ILE 66 A ABA 67 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale10 covale both ? A ABA 67 C ? ? ? 1_555 A GLY 68 N ? ? A ABA 67 A GLY 68 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale11 covale both ? A GLY 94 C ? ? ? 1_555 A ABA 95 N ? ? A GLY 94 A ABA 95 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale12 covale both ? A ABA 95 C ? ? ? 1_555 A THR 96 N ? ? A ABA 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale13 covale both ? B GLU 35 C ? ? ? 1_555 B NLE 36 N ? ? B GLU 35 B NLE 36 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? B NLE 36 C ? ? ? 1_555 B ASN 37 N ? ? B NLE 36 B ASN 37 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? B GLY 40 C ? ? ? 1_555 B YCM 41 N ? ? B GLY 40 B YCM 41 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? B YCM 41 C ? ? ? 1_555 B TRP 42 N ? ? B YCM 41 B TRP 42 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale17 covale both ? B LYS 45 C ? ? ? 1_555 B NLE 46 N ? ? B LYS 45 B NLE 46 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale18 covale both ? B NLE 46 C ? ? ? 1_555 B ILE 47 N ? ? B NLE 46 B ILE 47 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale19 covale both ? B ILE 50 C ? ? ? 1_555 B GOA 51 O2 ? ? B ILE 50 B GOA 51 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale20 covale both ? B GOA 51 C ? ? ? 1_555 B GLY 52 N ? ? B GOA 51 B GLY 52 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale21 covale both ? B ILE 66 C ? ? ? 1_555 B ABA 67 N ? ? B ILE 66 B ABA 67 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale22 covale both ? B ABA 67 C ? ? ? 1_555 B GLY 68 N ? ? B ABA 67 B GLY 68 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale23 covale both ? B GLY 94 C ? ? ? 1_555 B ABA 95 N ? ? B GLY 94 B ABA 95 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale24 covale both ? B ABA 95 C ? ? ? 1_555 B THR 96 N ? ? B ABA 95 B THR 96 1_555 ? ? ? ? ? ? ? 1.316 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 48 ? LYS A 43 GLY A 48 B 2 PHE A 53 ? ILE A 66 ? PHE A 53 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 PHE A 53 ? ILE A 66 ? PHE A 53 ILE A 66 C 1 LYS B 43 ? GLY B 48 ? LYS B 43 GLY B 48 C 2 PHE B 53 ? ILE B 66 ? PHE B 53 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? ILE B 33 ? VAL B 32 ILE B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 PHE B 53 ? ILE B 66 ? PHE B 53 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N ARG A 14 ? N ARG A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N ILE B 66 ? N ILE B 66 O HIS B 69 ? O HIS B 69 C 3 4 O LEU B 76 ? O LEU B 76 N ILE B 33 ? N ILE B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N ARG B 14 ? N ARG B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2NC 100 ? 25 'BINDING SITE FOR RESIDUE 2NC A 100' AC2 Software A SO4 501 ? 3 'BINDING SITE FOR RESIDUE SO4 A 501' AC3 Software B SO4 502 ? 8 'BINDING SITE FOR RESIDUE SO4 B 502' AC4 Software B SO4 503 ? 6 'BINDING SITE FOR RESIDUE SO4 B 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 25 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 25 LEU A 23 ? LEU A 23 . ? 1_555 ? 3 AC1 25 ASP A 25 ? ASP A 25 . ? 1_555 ? 4 AC1 25 GLY A 27 ? GLY A 27 . ? 1_555 ? 5 AC1 25 ALA A 28 ? ALA A 28 . ? 1_555 ? 6 AC1 25 ASP A 29 ? ASP A 29 . ? 1_555 ? 7 AC1 25 ASP A 30 ? ASP A 30 . ? 1_555 ? 8 AC1 25 GLY A 48 ? GLY A 48 . ? 1_555 ? 9 AC1 25 VAL A 82 ? VAL A 82 . ? 1_555 ? 10 AC1 25 HOH G . ? HOH A 301 . ? 1_555 ? 11 AC1 25 HOH G . ? HOH A 313 . ? 1_555 ? 12 AC1 25 HOH G . ? HOH A 321 . ? 1_555 ? 13 AC1 25 HOH G . ? HOH A 339 . ? 1_555 ? 14 AC1 25 ARG B 8 ? ARG B 8 . ? 1_555 ? 15 AC1 25 ASP B 25 ? ASP B 25 . ? 1_555 ? 16 AC1 25 GLY B 27 ? GLY B 27 . ? 1_555 ? 17 AC1 25 ALA B 28 ? ALA B 28 . ? 1_555 ? 18 AC1 25 ASP B 29 ? ASP B 29 . ? 1_555 ? 19 AC1 25 ASP B 30 ? ASP B 30 . ? 1_555 ? 20 AC1 25 ILE B 47 ? ILE B 47 . ? 1_555 ? 21 AC1 25 GLY B 48 ? GLY B 48 . ? 1_555 ? 22 AC1 25 GLY B 49 ? GLY B 49 . ? 1_555 ? 23 AC1 25 VAL B 82 ? VAL B 82 . ? 1_555 ? 24 AC1 25 HOH H . ? HOH B 103 . ? 1_555 ? 25 AC1 25 HOH H . ? HOH B 127 . ? 1_555 ? 26 AC2 3 LYS A 45 ? LYS A 45 . ? 1_555 ? 27 AC2 3 NLE A 46 ? NLE A 46 . ? 1_555 ? 28 AC2 3 HOH H . ? HOH B 108 . ? 3_545 ? 29 AC3 8 ARG A 14 ? ARG A 14 . ? 1_455 ? 30 AC3 8 GLY A 16 ? GLY A 16 . ? 1_455 ? 31 AC3 8 GLY A 17 ? GLY A 17 . ? 1_455 ? 32 AC3 8 HOH G . ? HOH A 323 . ? 1_455 ? 33 AC3 8 HOH G . ? HOH A 331 . ? 1_455 ? 34 AC3 8 ARG B 14 ? ARG B 14 . ? 1_555 ? 35 AC3 8 HOH H . ? HOH B 173 . ? 1_555 ? 36 AC3 8 HOH H . ? HOH B 348 . ? 1_555 ? 37 AC4 6 GLY A 52 ? GLY A 52 . ? 3_555 ? 38 AC4 6 PHE A 53 ? PHE A 53 . ? 3_555 ? 39 AC4 6 HIS A 69 ? HIS A 69 . ? 4_456 ? 40 AC4 6 HOH G . ? HOH A 324 . ? 3_555 ? 41 AC4 6 GLN B 92 ? GLN B 92 . ? 1_555 ? 42 AC4 6 HOH H . ? HOH B 121 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 34 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 35 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.53 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 38 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 39 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 39 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.42 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 12.12 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 35 ? ? 9.22 -156.04 2 1 NLE A 36 ? ? 129.98 110.25 3 1 LEU A 38 ? ? 39.05 158.98 4 1 PRO A 39 ? ? -21.77 -129.68 # _pdbx_molecule_features.prd_id PRD_000398 _pdbx_molecule_features.name 'N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000398 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A NLE 36 A NLE 36 ? LEU NORLEUCINE 2 A YCM 41 A YCM 41 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 3 A NLE 46 A NLE 46 ? LEU NORLEUCINE 4 A ABA 67 A ABA 67 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 5 A ABA 95 A ABA 95 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 6 B NLE 36 B NLE 36 ? LEU NORLEUCINE 7 B YCM 41 B YCM 41 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 8 B NLE 46 B NLE 46 ? LEU NORLEUCINE 9 B ABA 67 B ABA 67 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 10 B ABA 95 B ABA 95 ? ALA 'ALPHA-AMINOBUTYRIC ACID' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.7636 0.5956 19.1530 -0.0272 0.0056 -0.0143 0.0320 -0.0140 -0.0140 0.4843 1.0781 0.5484 0.0603 0.4114 0.3730 0.0145 0.1052 0.0194 0.1225 0.0752 -0.2001 0.0655 0.1443 -0.0897 'X-RAY DIFFRACTION' 2 ? refined -5.6373 1.6848 17.3667 -0.0195 -0.0252 -0.0223 0.0034 0.0065 0.0015 0.8033 1.1376 0.7984 0.1035 0.0248 0.2953 0.0507 0.0375 0.0017 0.0715 -0.0581 0.1411 0.1495 -0.0715 0.0074 'X-RAY DIFFRACTION' 3 ? refined 5.3046 -1.0443 13.6090 -0.0439 -0.0036 -0.0539 0.0135 0.0219 -0.0067 3.8968 13.0193 5.0059 -4.0545 2.4508 -4.5354 0.0371 0.2146 0.2452 -0.1066 -0.2714 -0.1862 -0.0428 0.2191 0.2342 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 98 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 98 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 100 ? ? A 100 ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2NC C C N N 1 2NC O O N N 2 2NC CH3 C N N 3 2NC N N N N 4 2NC CA C N S 5 2NC C1 C N N 6 2NC O1 O N N 7 2NC CB C N R 8 2NC OG1 O N N 9 2NC CG2 C N N 10 2NC N1 N N N 11 2NC CA1 C N S 12 2NC C2 C N N 13 2NC O2 O N N 14 2NC CB1 C N S 15 2NC CG1 C N N 16 2NC CG21 C N N 17 2NC CD1 C N N 18 2NC N2 N N N 19 2NC CA2 C N S 20 2NC C3 C N N 21 2NC CB2 C N N 22 2NC CG C N N 23 2NC CD C N N 24 2NC CE C N N 25 2NC N3 N N N 26 2NC CA3 C N S 27 2NC C4 C N N 28 2NC O3 O N N 29 2NC CB3 C N N 30 2NC CG3 C N N 31 2NC CD2 C N N 32 2NC CE1 C N N 33 2NC N4 N N N 34 2NC CA4 C N S 35 2NC C5 C N N 36 2NC O4 O N N 37 2NC CB4 C N N 38 2NC CG4 C N N 39 2NC CD3 C N N 40 2NC OE1 O N N 41 2NC NE2 N N N 42 2NC N5 N N N 43 2NC CA5 C N S 44 2NC C6 C N N 45 2NC O5 O N N 46 2NC CB5 C N N 47 2NC CG5 C N N 48 2NC CD4 C N N 49 2NC NE N N N 50 2NC CZ C N N 51 2NC NH1 N N N 52 2NC NH2 N N N 53 2NC N6 N N N 54 2NC H1 H N N 55 2NC H2 H N N 56 2NC H3 H N N 57 2NC H H N N 58 2NC HA H N N 59 2NC HB H N N 60 2NC HG1 H N N 61 2NC HG21 H N N 62 2NC HG22 H N N 63 2NC HG23 H N N 64 2NC H4 H N N 65 2NC HA1 H N N 66 2NC HB1 H N N 67 2NC HG12 H N N 68 2NC HG13 H N N 69 2NC HG24 H N N 70 2NC HG25 H N N 71 2NC HG26 H N N 72 2NC HD11 H N N 73 2NC HD12 H N N 74 2NC HD13 H N N 75 2NC H5 H N N 76 2NC HA2 H N N 77 2NC HC31 H N N 78 2NC HC32 H N N 79 2NC HB2 H N N 80 2NC HB3 H N N 81 2NC HG2 H N N 82 2NC HG3 H N N 83 2NC HD2 H N N 84 2NC HD3 H N N 85 2NC HE1 H N N 86 2NC HE2 H N N 87 2NC HE3 H N N 88 2NC H6 H N N 89 2NC HA3 H N N 90 2NC HB21 H N N 91 2NC HB31 H N N 92 2NC HG27 H N N 93 2NC HG31 H N N 94 2NC HD21 H N N 95 2NC HD31 H N N 96 2NC HE11 H N N 97 2NC HE21 H N N 98 2NC HE31 H N N 99 2NC H7 H N N 100 2NC HA4 H N N 101 2NC HB22 H N N 102 2NC HB32 H N N 103 2NC HG28 H N N 104 2NC HG32 H N N 105 2NC HE22 H N N 106 2NC HE23 H N N 107 2NC H8 H N N 108 2NC HA5 H N N 109 2NC HB23 H N N 110 2NC HB33 H N N 111 2NC HG29 H N N 112 2NC HG33 H N N 113 2NC HD22 H N N 114 2NC HD32 H N N 115 2NC HE H N N 116 2NC HH11 H N N 117 2NC HH12 H N N 118 2NC HH21 H N N 119 2NC HH22 H N N 120 2NC HN1 H N N 121 2NC HN2 H N N 122 ABA N N N N 123 ABA CA C N S 124 ABA C C N N 125 ABA O O N N 126 ABA CB C N N 127 ABA CG C N N 128 ABA OXT O N N 129 ABA H H N N 130 ABA H2 H N N 131 ABA HA H N N 132 ABA HB3 H N N 133 ABA HB2 H N N 134 ABA HG1 H N N 135 ABA HG3 H N N 136 ABA HG2 H N N 137 ABA HXT H N N 138 ALA N N N N 139 ALA CA C N S 140 ALA C C N N 141 ALA O O N N 142 ALA CB C N N 143 ALA OXT O N N 144 ALA H H N N 145 ALA H2 H N N 146 ALA HA H N N 147 ALA HB1 H N N 148 ALA HB2 H N N 149 ALA HB3 H N N 150 ALA HXT H N N 151 ARG N N N N 152 ARG CA C N S 153 ARG C C N N 154 ARG O O N N 155 ARG CB C N N 156 ARG CG C N N 157 ARG CD C N N 158 ARG NE N N N 159 ARG CZ C N N 160 ARG NH1 N N N 161 ARG NH2 N N N 162 ARG OXT O N N 163 ARG H H N N 164 ARG H2 H N N 165 ARG HA H N N 166 ARG HB2 H N N 167 ARG HB3 H N N 168 ARG HG2 H N N 169 ARG HG3 H N N 170 ARG HD2 H N N 171 ARG HD3 H N N 172 ARG HE H N N 173 ARG HH11 H N N 174 ARG HH12 H N N 175 ARG HH21 H N N 176 ARG HH22 H N N 177 ARG HXT H N N 178 ASN N N N N 179 ASN CA C N S 180 ASN C C N N 181 ASN O O N N 182 ASN CB C N N 183 ASN CG C N N 184 ASN OD1 O N N 185 ASN ND2 N N N 186 ASN OXT O N N 187 ASN H H N N 188 ASN H2 H N N 189 ASN HA H N N 190 ASN HB2 H N N 191 ASN HB3 H N N 192 ASN HD21 H N N 193 ASN HD22 H N N 194 ASN HXT H N N 195 ASP N N N N 196 ASP CA C N S 197 ASP C C N N 198 ASP O O N N 199 ASP CB C N N 200 ASP CG C N N 201 ASP OD1 O N N 202 ASP OD2 O N N 203 ASP OXT O N N 204 ASP H H N N 205 ASP H2 H N N 206 ASP HA H N N 207 ASP HB2 H N N 208 ASP HB3 H N N 209 ASP HD2 H N N 210 ASP HXT H N N 211 GLN N N N N 212 GLN CA C N S 213 GLN C C N N 214 GLN O O N N 215 GLN CB C N N 216 GLN CG C N N 217 GLN CD C N N 218 GLN OE1 O N N 219 GLN NE2 N N N 220 GLN OXT O N N 221 GLN H H N N 222 GLN H2 H N N 223 GLN HA H N N 224 GLN HB2 H N N 225 GLN HB3 H N N 226 GLN HG2 H N N 227 GLN HG3 H N N 228 GLN HE21 H N N 229 GLN HE22 H N N 230 GLN HXT H N N 231 GLU N N N N 232 GLU CA C N S 233 GLU C C N N 234 GLU O O N N 235 GLU CB C N N 236 GLU CG C N N 237 GLU CD C N N 238 GLU OE1 O N N 239 GLU OE2 O N N 240 GLU OXT O N N 241 GLU H H N N 242 GLU H2 H N N 243 GLU HA H N N 244 GLU HB2 H N N 245 GLU HB3 H N N 246 GLU HG2 H N N 247 GLU HG3 H N N 248 GLU HE2 H N N 249 GLU HXT H N N 250 GLY N N N N 251 GLY CA C N N 252 GLY C C N N 253 GLY O O N N 254 GLY OXT O N N 255 GLY H H N N 256 GLY H2 H N N 257 GLY HA2 H N N 258 GLY HA3 H N N 259 GLY HXT H N N 260 GOA C C N N 261 GOA CA C N N 262 GOA O O N N 263 GOA OXT O N N 264 GOA O2 O N N 265 GOA H22 H N N 266 GOA H21 H N N 267 GOA HXT H N N 268 GOA H20 H N N 269 HIS N N N N 270 HIS CA C N S 271 HIS C C N N 272 HIS O O N N 273 HIS CB C N N 274 HIS CG C Y N 275 HIS ND1 N Y N 276 HIS CD2 C Y N 277 HIS CE1 C Y N 278 HIS NE2 N Y N 279 HIS OXT O N N 280 HIS H H N N 281 HIS H2 H N N 282 HIS HA H N N 283 HIS HB2 H N N 284 HIS HB3 H N N 285 HIS HD1 H N N 286 HIS HD2 H N N 287 HIS HE1 H N N 288 HIS HE2 H N N 289 HIS HXT H N N 290 HOH O O N N 291 HOH H1 H N N 292 HOH H2 H N N 293 ILE N N N N 294 ILE CA C N S 295 ILE C C N N 296 ILE O O N N 297 ILE CB C N S 298 ILE CG1 C N N 299 ILE CG2 C N N 300 ILE CD1 C N N 301 ILE OXT O N N 302 ILE H H N N 303 ILE H2 H N N 304 ILE HA H N N 305 ILE HB H N N 306 ILE HG12 H N N 307 ILE HG13 H N N 308 ILE HG21 H N N 309 ILE HG22 H N N 310 ILE HG23 H N N 311 ILE HD11 H N N 312 ILE HD12 H N N 313 ILE HD13 H N N 314 ILE HXT H N N 315 LEU N N N N 316 LEU CA C N S 317 LEU C C N N 318 LEU O O N N 319 LEU CB C N N 320 LEU CG C N N 321 LEU CD1 C N N 322 LEU CD2 C N N 323 LEU OXT O N N 324 LEU H H N N 325 LEU H2 H N N 326 LEU HA H N N 327 LEU HB2 H N N 328 LEU HB3 H N N 329 LEU HG H N N 330 LEU HD11 H N N 331 LEU HD12 H N N 332 LEU HD13 H N N 333 LEU HD21 H N N 334 LEU HD22 H N N 335 LEU HD23 H N N 336 LEU HXT H N N 337 LYS N N N N 338 LYS CA C N S 339 LYS C C N N 340 LYS O O N N 341 LYS CB C N N 342 LYS CG C N N 343 LYS CD C N N 344 LYS CE C N N 345 LYS NZ N N N 346 LYS OXT O N N 347 LYS H H N N 348 LYS H2 H N N 349 LYS HA H N N 350 LYS HB2 H N N 351 LYS HB3 H N N 352 LYS HG2 H N N 353 LYS HG3 H N N 354 LYS HD2 H N N 355 LYS HD3 H N N 356 LYS HE2 H N N 357 LYS HE3 H N N 358 LYS HZ1 H N N 359 LYS HZ2 H N N 360 LYS HZ3 H N N 361 LYS HXT H N N 362 NLE N N N N 363 NLE CA C N S 364 NLE C C N N 365 NLE O O N N 366 NLE OXT O N N 367 NLE CB C N N 368 NLE CG C N N 369 NLE CD C N N 370 NLE CE C N N 371 NLE H H N N 372 NLE H2 H N N 373 NLE HA H N N 374 NLE HXT H N N 375 NLE HB2 H N N 376 NLE HB3 H N N 377 NLE HG2 H N N 378 NLE HG3 H N N 379 NLE HD2 H N N 380 NLE HD3 H N N 381 NLE HE1 H N N 382 NLE HE2 H N N 383 NLE HE3 H N N 384 PHE N N N N 385 PHE CA C N S 386 PHE C C N N 387 PHE O O N N 388 PHE CB C N N 389 PHE CG C Y N 390 PHE CD1 C Y N 391 PHE CD2 C Y N 392 PHE CE1 C Y N 393 PHE CE2 C Y N 394 PHE CZ C Y N 395 PHE OXT O N N 396 PHE H H N N 397 PHE H2 H N N 398 PHE HA H N N 399 PHE HB2 H N N 400 PHE HB3 H N N 401 PHE HD1 H N N 402 PHE HD2 H N N 403 PHE HE1 H N N 404 PHE HE2 H N N 405 PHE HZ H N N 406 PHE HXT H N N 407 PRO N N N N 408 PRO CA C N S 409 PRO C C N N 410 PRO O O N N 411 PRO CB C N N 412 PRO CG C N N 413 PRO CD C N N 414 PRO OXT O N N 415 PRO H H N N 416 PRO HA H N N 417 PRO HB2 H N N 418 PRO HB3 H N N 419 PRO HG2 H N N 420 PRO HG3 H N N 421 PRO HD2 H N N 422 PRO HD3 H N N 423 PRO HXT H N N 424 SO4 S S N N 425 SO4 O1 O N N 426 SO4 O2 O N N 427 SO4 O3 O N N 428 SO4 O4 O N N 429 THR N N N N 430 THR CA C N S 431 THR C C N N 432 THR O O N N 433 THR CB C N R 434 THR OG1 O N N 435 THR CG2 C N N 436 THR OXT O N N 437 THR H H N N 438 THR H2 H N N 439 THR HA H N N 440 THR HB H N N 441 THR HG1 H N N 442 THR HG21 H N N 443 THR HG22 H N N 444 THR HG23 H N N 445 THR HXT H N N 446 TRP N N N N 447 TRP CA C N S 448 TRP C C N N 449 TRP O O N N 450 TRP CB C N N 451 TRP CG C Y N 452 TRP CD1 C Y N 453 TRP CD2 C Y N 454 TRP NE1 N Y N 455 TRP CE2 C Y N 456 TRP CE3 C Y N 457 TRP CZ2 C Y N 458 TRP CZ3 C Y N 459 TRP CH2 C Y N 460 TRP OXT O N N 461 TRP H H N N 462 TRP H2 H N N 463 TRP HA H N N 464 TRP HB2 H N N 465 TRP HB3 H N N 466 TRP HD1 H N N 467 TRP HE1 H N N 468 TRP HE3 H N N 469 TRP HZ2 H N N 470 TRP HZ3 H N N 471 TRP HH2 H N N 472 TRP HXT H N N 473 TYR N N N N 474 TYR CA C N S 475 TYR C C N N 476 TYR O O N N 477 TYR CB C N N 478 TYR CG C Y N 479 TYR CD1 C Y N 480 TYR CD2 C Y N 481 TYR CE1 C Y N 482 TYR CE2 C Y N 483 TYR CZ C Y N 484 TYR OH O N N 485 TYR OXT O N N 486 TYR H H N N 487 TYR H2 H N N 488 TYR HA H N N 489 TYR HB2 H N N 490 TYR HB3 H N N 491 TYR HD1 H N N 492 TYR HD2 H N N 493 TYR HE1 H N N 494 TYR HE2 H N N 495 TYR HH H N N 496 TYR HXT H N N 497 VAL N N N N 498 VAL CA C N S 499 VAL C C N N 500 VAL O O N N 501 VAL CB C N N 502 VAL CG1 C N N 503 VAL CG2 C N N 504 VAL OXT O N N 505 VAL H H N N 506 VAL H2 H N N 507 VAL HA H N N 508 VAL HB H N N 509 VAL HG11 H N N 510 VAL HG12 H N N 511 VAL HG13 H N N 512 VAL HG21 H N N 513 VAL HG22 H N N 514 VAL HG23 H N N 515 VAL HXT H N N 516 YCM N N N N 517 YCM CA C N R 518 YCM CB C N N 519 YCM SG S N N 520 YCM CD C N N 521 YCM CE C N N 522 YCM OZ1 O N N 523 YCM NZ2 N N N 524 YCM C C N N 525 YCM O O N N 526 YCM OXT O N N 527 YCM H H N N 528 YCM H2 H N N 529 YCM HA H N N 530 YCM HB2 H N N 531 YCM HB3 H N N 532 YCM HD2 H N N 533 YCM HD3 H N N 534 YCM HZ21 H N N 535 YCM HZ22 H N N 536 YCM HXT H N N 537 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2NC C O doub N N 1 2NC C CH3 sing N N 2 2NC CH3 H1 sing N N 3 2NC CH3 H2 sing N N 4 2NC CH3 H3 sing N N 5 2NC N CA sing N N 6 2NC N H sing N N 7 2NC CA C1 sing N N 8 2NC CA CB sing N N 9 2NC CA HA sing N N 10 2NC C1 O1 doub N N 11 2NC CB OG1 sing N N 12 2NC CB CG2 sing N N 13 2NC CB HB sing N N 14 2NC OG1 HG1 sing N N 15 2NC CG2 HG21 sing N N 16 2NC CG2 HG22 sing N N 17 2NC CG2 HG23 sing N N 18 2NC N1 CA1 sing N N 19 2NC N1 H4 sing N N 20 2NC CA1 C2 sing N N 21 2NC CA1 CB1 sing N N 22 2NC CA1 HA1 sing N N 23 2NC C2 O2 doub N N 24 2NC CB1 CG1 sing N N 25 2NC CB1 CG21 sing N N 26 2NC CB1 HB1 sing N N 27 2NC CG1 CD1 sing N N 28 2NC CG1 HG12 sing N N 29 2NC CG1 HG13 sing N N 30 2NC CG21 HG24 sing N N 31 2NC CG21 HG25 sing N N 32 2NC CG21 HG26 sing N N 33 2NC CD1 HD11 sing N N 34 2NC CD1 HD12 sing N N 35 2NC CD1 HD13 sing N N 36 2NC N2 CA2 sing N N 37 2NC N2 H5 sing N N 38 2NC CA2 C3 sing N N 39 2NC CA2 CB2 sing N N 40 2NC CA2 HA2 sing N N 41 2NC CB2 CG sing N N 42 2NC CB2 HB2 sing N N 43 2NC CB2 HB3 sing N N 44 2NC CG CD sing N N 45 2NC CG HG2 sing N N 46 2NC CG HG3 sing N N 47 2NC CD CE sing N N 48 2NC CD HD2 sing N N 49 2NC CD HD3 sing N N 50 2NC CE HE1 sing N N 51 2NC CE HE2 sing N N 52 2NC CE HE3 sing N N 53 2NC N3 CA3 sing N N 54 2NC N3 H6 sing N N 55 2NC CA3 C4 sing N N 56 2NC CA3 CB3 sing N N 57 2NC CA3 HA3 sing N N 58 2NC C4 O3 doub N N 59 2NC CB3 CG3 sing N N 60 2NC CB3 HB21 sing N N 61 2NC CB3 HB31 sing N N 62 2NC CG3 CD2 sing N N 63 2NC CG3 HG27 sing N N 64 2NC CG3 HG31 sing N N 65 2NC CD2 CE1 sing N N 66 2NC CD2 HD21 sing N N 67 2NC CD2 HD31 sing N N 68 2NC CE1 HE11 sing N N 69 2NC CE1 HE21 sing N N 70 2NC CE1 HE31 sing N N 71 2NC N4 CA4 sing N N 72 2NC N4 H7 sing N N 73 2NC CA4 C5 sing N N 74 2NC CA4 CB4 sing N N 75 2NC CA4 HA4 sing N N 76 2NC C5 O4 doub N N 77 2NC CB4 CG4 sing N N 78 2NC CB4 HB22 sing N N 79 2NC CB4 HB32 sing N N 80 2NC CG4 CD3 sing N N 81 2NC CG4 HG28 sing N N 82 2NC CG4 HG32 sing N N 83 2NC CD3 OE1 doub N N 84 2NC CD3 NE2 sing N N 85 2NC NE2 HE22 sing N N 86 2NC NE2 HE23 sing N N 87 2NC N5 CA5 sing N N 88 2NC N5 H8 sing N N 89 2NC CA5 C6 sing N N 90 2NC CA5 CB5 sing N N 91 2NC CA5 HA5 sing N N 92 2NC C6 O5 doub N N 93 2NC CB5 CG5 sing N N 94 2NC CB5 HB23 sing N N 95 2NC CB5 HB33 sing N N 96 2NC CG5 CD4 sing N N 97 2NC CG5 HG29 sing N N 98 2NC CG5 HG33 sing N N 99 2NC CD4 NE sing N N 100 2NC CD4 HD22 sing N N 101 2NC CD4 HD32 sing N N 102 2NC NE CZ sing N N 103 2NC NE HE sing N N 104 2NC CZ NH1 sing N N 105 2NC CZ NH2 doub N N 106 2NC NH1 HH11 sing N N 107 2NC NH1 HH12 sing N N 108 2NC NH2 HH21 sing N N 109 2NC NH2 HH22 sing N N 110 2NC N6 HN1 sing N N 111 2NC N6 HN2 sing N N 112 2NC C N sing N N 113 2NC C1 N1 sing N N 114 2NC C2 N2 sing N N 115 2NC C3 N3 sing N N 116 2NC C4 N4 sing N N 117 2NC C5 N5 sing N N 118 2NC C3 HC31 sing N N 119 2NC C3 HC32 sing N N 120 2NC C6 N6 sing N N 121 ABA N CA sing N N 122 ABA N H sing N N 123 ABA N H2 sing N N 124 ABA CA C sing N N 125 ABA CA CB sing N N 126 ABA CA HA sing N N 127 ABA C O doub N N 128 ABA C OXT sing N N 129 ABA CB CG sing N N 130 ABA CB HB3 sing N N 131 ABA CB HB2 sing N N 132 ABA CG HG1 sing N N 133 ABA CG HG3 sing N N 134 ABA CG HG2 sing N N 135 ABA OXT HXT sing N N 136 ALA N CA sing N N 137 ALA N H sing N N 138 ALA N H2 sing N N 139 ALA CA C sing N N 140 ALA CA CB sing N N 141 ALA CA HA sing N N 142 ALA C O doub N N 143 ALA C OXT sing N N 144 ALA CB HB1 sing N N 145 ALA CB HB2 sing N N 146 ALA CB HB3 sing N N 147 ALA OXT HXT sing N N 148 ARG N CA sing N N 149 ARG N H sing N N 150 ARG N H2 sing N N 151 ARG CA C sing N N 152 ARG CA CB sing N N 153 ARG CA HA sing N N 154 ARG C O doub N N 155 ARG C OXT sing N N 156 ARG CB CG sing N N 157 ARG CB HB2 sing N N 158 ARG CB HB3 sing N N 159 ARG CG CD sing N N 160 ARG CG HG2 sing N N 161 ARG CG HG3 sing N N 162 ARG CD NE sing N N 163 ARG CD HD2 sing N N 164 ARG CD HD3 sing N N 165 ARG NE CZ sing N N 166 ARG NE HE sing N N 167 ARG CZ NH1 sing N N 168 ARG CZ NH2 doub N N 169 ARG NH1 HH11 sing N N 170 ARG NH1 HH12 sing N N 171 ARG NH2 HH21 sing N N 172 ARG NH2 HH22 sing N N 173 ARG OXT HXT sing N N 174 ASN N CA sing N N 175 ASN N H sing N N 176 ASN N H2 sing N N 177 ASN CA C sing N N 178 ASN CA CB sing N N 179 ASN CA HA sing N N 180 ASN C O doub N N 181 ASN C OXT sing N N 182 ASN CB CG sing N N 183 ASN CB HB2 sing N N 184 ASN CB HB3 sing N N 185 ASN CG OD1 doub N N 186 ASN CG ND2 sing N N 187 ASN ND2 HD21 sing N N 188 ASN ND2 HD22 sing N N 189 ASN OXT HXT sing N N 190 ASP N CA sing N N 191 ASP N H sing N N 192 ASP N H2 sing N N 193 ASP CA C sing N N 194 ASP CA CB sing N N 195 ASP CA HA sing N N 196 ASP C O doub N N 197 ASP C OXT sing N N 198 ASP CB CG sing N N 199 ASP CB HB2 sing N N 200 ASP CB HB3 sing N N 201 ASP CG OD1 doub N N 202 ASP CG OD2 sing N N 203 ASP OD2 HD2 sing N N 204 ASP OXT HXT sing N N 205 GLN N CA sing N N 206 GLN N H sing N N 207 GLN N H2 sing N N 208 GLN CA C sing N N 209 GLN CA CB sing N N 210 GLN CA HA sing N N 211 GLN C O doub N N 212 GLN C OXT sing N N 213 GLN CB CG sing N N 214 GLN CB HB2 sing N N 215 GLN CB HB3 sing N N 216 GLN CG CD sing N N 217 GLN CG HG2 sing N N 218 GLN CG HG3 sing N N 219 GLN CD OE1 doub N N 220 GLN CD NE2 sing N N 221 GLN NE2 HE21 sing N N 222 GLN NE2 HE22 sing N N 223 GLN OXT HXT sing N N 224 GLU N CA sing N N 225 GLU N H sing N N 226 GLU N H2 sing N N 227 GLU CA C sing N N 228 GLU CA CB sing N N 229 GLU CA HA sing N N 230 GLU C O doub N N 231 GLU C OXT sing N N 232 GLU CB CG sing N N 233 GLU CB HB2 sing N N 234 GLU CB HB3 sing N N 235 GLU CG CD sing N N 236 GLU CG HG2 sing N N 237 GLU CG HG3 sing N N 238 GLU CD OE1 doub N N 239 GLU CD OE2 sing N N 240 GLU OE2 HE2 sing N N 241 GLU OXT HXT sing N N 242 GLY N CA sing N N 243 GLY N H sing N N 244 GLY N H2 sing N N 245 GLY CA C sing N N 246 GLY CA HA2 sing N N 247 GLY CA HA3 sing N N 248 GLY C O doub N N 249 GLY C OXT sing N N 250 GLY OXT HXT sing N N 251 GOA C CA sing N N 252 GOA C O doub N N 253 GOA C OXT sing N N 254 GOA CA O2 sing N N 255 GOA CA H22 sing N N 256 GOA CA H21 sing N N 257 GOA OXT HXT sing N N 258 GOA O2 H20 sing N N 259 HIS N CA sing N N 260 HIS N H sing N N 261 HIS N H2 sing N N 262 HIS CA C sing N N 263 HIS CA CB sing N N 264 HIS CA HA sing N N 265 HIS C O doub N N 266 HIS C OXT sing N N 267 HIS CB CG sing N N 268 HIS CB HB2 sing N N 269 HIS CB HB3 sing N N 270 HIS CG ND1 sing Y N 271 HIS CG CD2 doub Y N 272 HIS ND1 CE1 doub Y N 273 HIS ND1 HD1 sing N N 274 HIS CD2 NE2 sing Y N 275 HIS CD2 HD2 sing N N 276 HIS CE1 NE2 sing Y N 277 HIS CE1 HE1 sing N N 278 HIS NE2 HE2 sing N N 279 HIS OXT HXT sing N N 280 HOH O H1 sing N N 281 HOH O H2 sing N N 282 ILE N CA sing N N 283 ILE N H sing N N 284 ILE N H2 sing N N 285 ILE CA C sing N N 286 ILE CA CB sing N N 287 ILE CA HA sing N N 288 ILE C O doub N N 289 ILE C OXT sing N N 290 ILE CB CG1 sing N N 291 ILE CB CG2 sing N N 292 ILE CB HB sing N N 293 ILE CG1 CD1 sing N N 294 ILE CG1 HG12 sing N N 295 ILE CG1 HG13 sing N N 296 ILE CG2 HG21 sing N N 297 ILE CG2 HG22 sing N N 298 ILE CG2 HG23 sing N N 299 ILE CD1 HD11 sing N N 300 ILE CD1 HD12 sing N N 301 ILE CD1 HD13 sing N N 302 ILE OXT HXT sing N N 303 LEU N CA sing N N 304 LEU N H sing N N 305 LEU N H2 sing N N 306 LEU CA C sing N N 307 LEU CA CB sing N N 308 LEU CA HA sing N N 309 LEU C O doub N N 310 LEU C OXT sing N N 311 LEU CB CG sing N N 312 LEU CB HB2 sing N N 313 LEU CB HB3 sing N N 314 LEU CG CD1 sing N N 315 LEU CG CD2 sing N N 316 LEU CG HG sing N N 317 LEU CD1 HD11 sing N N 318 LEU CD1 HD12 sing N N 319 LEU CD1 HD13 sing N N 320 LEU CD2 HD21 sing N N 321 LEU CD2 HD22 sing N N 322 LEU CD2 HD23 sing N N 323 LEU OXT HXT sing N N 324 LYS N CA sing N N 325 LYS N H sing N N 326 LYS N H2 sing N N 327 LYS CA C sing N N 328 LYS CA CB sing N N 329 LYS CA HA sing N N 330 LYS C O doub N N 331 LYS C OXT sing N N 332 LYS CB CG sing N N 333 LYS CB HB2 sing N N 334 LYS CB HB3 sing N N 335 LYS CG CD sing N N 336 LYS CG HG2 sing N N 337 LYS CG HG3 sing N N 338 LYS CD CE sing N N 339 LYS CD HD2 sing N N 340 LYS CD HD3 sing N N 341 LYS CE NZ sing N N 342 LYS CE HE2 sing N N 343 LYS CE HE3 sing N N 344 LYS NZ HZ1 sing N N 345 LYS NZ HZ2 sing N N 346 LYS NZ HZ3 sing N N 347 LYS OXT HXT sing N N 348 NLE N CA sing N N 349 NLE N H sing N N 350 NLE N H2 sing N N 351 NLE CA C sing N N 352 NLE CA CB sing N N 353 NLE CA HA sing N N 354 NLE C O doub N N 355 NLE C OXT sing N N 356 NLE OXT HXT sing N N 357 NLE CB CG sing N N 358 NLE CB HB2 sing N N 359 NLE CB HB3 sing N N 360 NLE CG CD sing N N 361 NLE CG HG2 sing N N 362 NLE CG HG3 sing N N 363 NLE CD CE sing N N 364 NLE CD HD2 sing N N 365 NLE CD HD3 sing N N 366 NLE CE HE1 sing N N 367 NLE CE HE2 sing N N 368 NLE CE HE3 sing N N 369 PHE N CA sing N N 370 PHE N H sing N N 371 PHE N H2 sing N N 372 PHE CA C sing N N 373 PHE CA CB sing N N 374 PHE CA HA sing N N 375 PHE C O doub N N 376 PHE C OXT sing N N 377 PHE CB CG sing N N 378 PHE CB HB2 sing N N 379 PHE CB HB3 sing N N 380 PHE CG CD1 doub Y N 381 PHE CG CD2 sing Y N 382 PHE CD1 CE1 sing Y N 383 PHE CD1 HD1 sing N N 384 PHE CD2 CE2 doub Y N 385 PHE CD2 HD2 sing N N 386 PHE CE1 CZ doub Y N 387 PHE CE1 HE1 sing N N 388 PHE CE2 CZ sing Y N 389 PHE CE2 HE2 sing N N 390 PHE CZ HZ sing N N 391 PHE OXT HXT sing N N 392 PRO N CA sing N N 393 PRO N CD sing N N 394 PRO N H sing N N 395 PRO CA C sing N N 396 PRO CA CB sing N N 397 PRO CA HA sing N N 398 PRO C O doub N N 399 PRO C OXT sing N N 400 PRO CB CG sing N N 401 PRO CB HB2 sing N N 402 PRO CB HB3 sing N N 403 PRO CG CD sing N N 404 PRO CG HG2 sing N N 405 PRO CG HG3 sing N N 406 PRO CD HD2 sing N N 407 PRO CD HD3 sing N N 408 PRO OXT HXT sing N N 409 SO4 S O1 doub N N 410 SO4 S O2 doub N N 411 SO4 S O3 sing N N 412 SO4 S O4 sing N N 413 THR N CA sing N N 414 THR N H sing N N 415 THR N H2 sing N N 416 THR CA C sing N N 417 THR CA CB sing N N 418 THR CA HA sing N N 419 THR C O doub N N 420 THR C OXT sing N N 421 THR CB OG1 sing N N 422 THR CB CG2 sing N N 423 THR CB HB sing N N 424 THR OG1 HG1 sing N N 425 THR CG2 HG21 sing N N 426 THR CG2 HG22 sing N N 427 THR CG2 HG23 sing N N 428 THR OXT HXT sing N N 429 TRP N CA sing N N 430 TRP N H sing N N 431 TRP N H2 sing N N 432 TRP CA C sing N N 433 TRP CA CB sing N N 434 TRP CA HA sing N N 435 TRP C O doub N N 436 TRP C OXT sing N N 437 TRP CB CG sing N N 438 TRP CB HB2 sing N N 439 TRP CB HB3 sing N N 440 TRP CG CD1 doub Y N 441 TRP CG CD2 sing Y N 442 TRP CD1 NE1 sing Y N 443 TRP CD1 HD1 sing N N 444 TRP CD2 CE2 doub Y N 445 TRP CD2 CE3 sing Y N 446 TRP NE1 CE2 sing Y N 447 TRP NE1 HE1 sing N N 448 TRP CE2 CZ2 sing Y N 449 TRP CE3 CZ3 doub Y N 450 TRP CE3 HE3 sing N N 451 TRP CZ2 CH2 doub Y N 452 TRP CZ2 HZ2 sing N N 453 TRP CZ3 CH2 sing Y N 454 TRP CZ3 HZ3 sing N N 455 TRP CH2 HH2 sing N N 456 TRP OXT HXT sing N N 457 TYR N CA sing N N 458 TYR N H sing N N 459 TYR N H2 sing N N 460 TYR CA C sing N N 461 TYR CA CB sing N N 462 TYR CA HA sing N N 463 TYR C O doub N N 464 TYR C OXT sing N N 465 TYR CB CG sing N N 466 TYR CB HB2 sing N N 467 TYR CB HB3 sing N N 468 TYR CG CD1 doub Y N 469 TYR CG CD2 sing Y N 470 TYR CD1 CE1 sing Y N 471 TYR CD1 HD1 sing N N 472 TYR CD2 CE2 doub Y N 473 TYR CD2 HD2 sing N N 474 TYR CE1 CZ doub Y N 475 TYR CE1 HE1 sing N N 476 TYR CE2 CZ sing Y N 477 TYR CE2 HE2 sing N N 478 TYR CZ OH sing N N 479 TYR OH HH sing N N 480 TYR OXT HXT sing N N 481 VAL N CA sing N N 482 VAL N H sing N N 483 VAL N H2 sing N N 484 VAL CA C sing N N 485 VAL CA CB sing N N 486 VAL CA HA sing N N 487 VAL C O doub N N 488 VAL C OXT sing N N 489 VAL CB CG1 sing N N 490 VAL CB CG2 sing N N 491 VAL CB HB sing N N 492 VAL CG1 HG11 sing N N 493 VAL CG1 HG12 sing N N 494 VAL CG1 HG13 sing N N 495 VAL CG2 HG21 sing N N 496 VAL CG2 HG22 sing N N 497 VAL CG2 HG23 sing N N 498 VAL OXT HXT sing N N 499 YCM N CA sing N N 500 YCM N H sing N N 501 YCM N H2 sing N N 502 YCM CA CB sing N N 503 YCM CA C sing N N 504 YCM CA HA sing N N 505 YCM CB SG sing N N 506 YCM CB HB2 sing N N 507 YCM CB HB3 sing N N 508 YCM SG CD sing N N 509 YCM CD CE sing N N 510 YCM CD HD2 sing N N 511 YCM CD HD3 sing N N 512 YCM CE OZ1 doub N N 513 YCM CE NZ2 sing N N 514 YCM NZ2 HZ21 sing N N 515 YCM NZ2 HZ22 sing N N 516 YCM C O doub N N 517 YCM C OXT sing N N 518 YCM OXT HXT sing N N 519 # _atom_sites.entry_id 3NYG _atom_sites.fract_transf_matrix[1][1] 0.019492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017336 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016196 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_