HEADER DNA 15-JUL-10 3NYP TITLE A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC TITLE 2 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE LIGAND TITLE 3 CONTAINING BIS-3-FLUOROPYRROLIDINE END SIDE CHAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS TELOMERIC SEQUENCE OCCURS NATURALLY IN THE SOURCE 4 ORGANISM OXYTRICHA NOVA KEYWDS QUADRUPLEX, OXTYRICHA NOVA, BSU-6039, BSU6039, ANTI-PARALLEL, KEYWDS 2 BIMOLECULAR, MACROMOLECULE, DNA, G-QUADRUPLEX, TELOMERE, ACRIDINE EXPDTA X-RAY DIFFRACTION AUTHOR N.H.CAMPBELL,S.NEIDLE REVDAT 4 06-SEP-23 3NYP 1 REMARK LINK REVDAT 3 16-NOV-11 3NYP 1 VERSN HETATM REVDAT 2 30-MAR-11 3NYP 1 JRNL REVDAT 1 25-AUG-10 3NYP 0 JRNL AUTH N.H.CAMPBELL,D.L.SMITH,A.P.RESZKA,S.NEIDLE,D.O'HAGAN JRNL TITL FLUORINE IN MEDICINAL CHEMISTRY: BETA-FLUORINATION OF JRNL TITL 2 PERIPHERAL PYRROLIDINES ATTACHED TO ACRIDINE LIGANDS AFFECTS JRNL TITL 3 THEIR INTERACTIONS WITH G-QUADRUPLEX DNA. JRNL REF ORG.BIOMOL.CHEM. V. 9 1328 2011 JRNL REFN ISSN 1477-0520 JRNL PMID 21221451 JRNL DOI 10.1039/C0OB00886A REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 23275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.9934 - 2.3572 0.98 3053 151 0.1731 0.1716 REMARK 3 2 2.3572 - 1.8713 0.99 2905 161 0.1513 0.1717 REMARK 3 3 1.8713 - 1.6348 0.98 2870 149 0.1329 0.1667 REMARK 3 4 1.6348 - 1.4854 0.97 2811 151 0.1574 0.1780 REMARK 3 5 1.4854 - 1.3789 0.95 2743 161 0.1602 0.2113 REMARK 3 6 1.3789 - 1.2976 0.93 2673 142 0.1539 0.1953 REMARK 3 7 1.2976 - 1.2327 0.90 2597 128 0.1663 0.2258 REMARK 3 8 1.2327 - 1.1790 0.86 2440 140 0.1983 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 46.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55250 REMARK 3 B22 (A**2) : 1.23040 REMARK 3 B33 (A**2) : -2.78290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 609 REMARK 3 ANGLE : 2.125 937 REMARK 3 CHIRALITY : 0.141 94 REMARK 3 PLANARITY : 0.022 27 REMARK 3 DIHEDRAL : 31.085 265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9702 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 21.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : 0.12000 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE 5 UL DROP CONTAINED 1.2 MM REMARK 280 QUADRUPLEX DNA, 1.2 MM LIGAND, 4% MPD, 4 MM POTASSIUM CHLORIDE, REMARK 280 4 MM MAGNESIUM CHLORIDE, 4 MM SODIUM CHLORIDE, 4 MM LITHIUM REMARK 280 SULPHATE, 3.2 MM SPERMINE.4HCL AND 16 MM POTASSIUM CACODYLATE REMARK 280 BUFFER AT PH 6.5. THIS WAS EQUILIBRATED AGAINST A RESERVOIR WELL REMARK 280 SOLUTION OF 500 UL OF 45% MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 285.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 147 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 152 O HOH B 174 2.13 REMARK 500 O HOH A 62 O HOH A 100 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 164 O HOH B 164 2655 1.99 REMARK 500 O HOH B 154 O HOH B 161 4456 2.05 REMARK 500 O HOH B 163 O HOH B 164 2655 2.18 REMARK 500 O HOH B 35 O HOH B 35 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG A 2 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG A 3 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG A 3 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG A 4 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 9 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 10 C5' - C4' - C3' ANGL. DEV. = 8.9 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 11 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 3 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG B 4 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG B 9 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG B 11 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 14 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 66.9 REMARK 620 3 DG A 11 O6 172.6 110.0 REMARK 620 4 DG A 12 O6 110.9 174.1 72.9 REMARK 620 5 DG B 3 O6 101.5 69.5 71.1 116.4 REMARK 620 6 DG B 4 O6 70.8 112.0 105.3 71.5 69.9 REMARK 620 7 DG B 9 O6 71.9 104.4 115.5 69.7 172.7 109.9 REMARK 620 8 DG B 10 O6 112.6 70.9 71.5 105.8 109.9 176.4 70.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 13 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 12 O6 103.2 REMARK 620 3 DG B 4 O6 66.4 70.6 REMARK 620 4 DT B 5 O2 94.8 124.5 69.9 REMARK 620 5 DT B 7 O2 74.3 155.6 126.9 79.7 REMARK 620 6 DG B 9 O6 67.5 68.9 107.0 160.9 88.2 REMARK 620 7 HOH B 14 O 141.4 96.1 152.2 101.2 74.4 89.6 REMARK 620 8 HOH B 24 O 162.6 70.5 96.3 76.9 118.3 122.1 55.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 15 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 3 O6 89.8 REMARK 620 3 DG A 10 O6 131.0 112.9 REMARK 620 4 DG A 11 O6 108.3 132.3 88.2 REMARK 620 5 DG B 2 O6 157.1 73.2 71.1 74.6 REMARK 620 6 DG B 3 O6 70.8 76.2 154.2 69.6 89.9 REMARK 620 7 DG B 10 O6 71.1 156.3 72.9 69.1 128.8 109.0 REMARK 620 8 DG B 11 O6 76.4 70.4 72.1 155.6 110.7 132.6 91.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 16 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DG A 4 O6 69.8 REMARK 620 3 DG A 9 O6 167.0 122.3 REMARK 620 4 DG A 10 O6 101.8 171.0 66.4 REMARK 620 5 DG B 1 O6 104.4 75.0 76.3 111.1 REMARK 620 6 DG B 2 O6 68.4 112.6 100.6 65.5 67.6 REMARK 620 7 DG B 11 O6 65.3 106.6 111.8 66.0 167.3 100.8 REMARK 620 8 DG B 12 O6 113.6 78.6 75.6 102.7 121.7 167.8 70.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RNR A 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 13 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JPQ RELATED DB: PDB REMARK 900 SAME QUADRUPLEX STRUCTURE IN ITS NATIVE FORM (LIGAND-FREE) REMARK 900 RELATED ID: 1JRN RELATED DB: PDB REMARK 900 SAME QUADRUPLEX STRUCTURE IN ITS NATIVE FORM (LIGAND-FREE) REMARK 900 RELATED ID: 1L1H RELATED DB: PDB REMARK 900 SAME QUADRUPLEX STRUCTURE BOUND TO THE NON-FLOURINATED FORM OF THE REMARK 900 LIGAND BSU-6039 REMARK 900 RELATED ID: 3CE5 RELATED DB: PDB REMARK 900 A BIMOLECULAR PARALLEL-STRANDED HUMAN TELOMERIC QUADRUPLEX IN REMARK 900 COMPLEX WITH A 3,6,9-TRISUBSTITUTED ACRIDINE MOLECULAR BRACO19 REMARK 900 RELATED ID: 3EM2 RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6038 REMARK 900 RELATED ID: 3EQW RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6042 IN REMARK 900 SMALL UNIT CELL REMARK 900 RELATED ID: 3ERU RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6045 REMARK 900 RELATED ID: 3ES0 RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6048 REMARK 900 RELATED ID: 3ET8 RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6054 REMARK 900 RELATED ID: 3EUI RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6042 IN REMARK 900 LARGE UNIT CELL REMARK 900 RELATED ID: 3EUM RELATED DB: PDB REMARK 900 A BIMOLECULAR ANTI-PARALLEL-STRANDED OXYTRICHA NOVA TELOMERIC REMARK 900 QUADRUPLEX IN COMPLEX WITH A 3,6-DISUBSTITUTED ACRIDINE BSU-6066 REMARK 900 RELATED ID: 3NZ7 RELATED DB: PDB DBREF 3NYP A 1 12 PDB 3NYP 3NYP 1 12 DBREF 3NYP B 1 12 PDB 3NYP 3NYP 1 12 SEQRES 1 A 12 DG DG DG DG DT DT DT DT DG DG DG DG SEQRES 1 B 12 DG DG DG DG DT DT DT DT DG DG DG DG HET K A 14 1 HET K A 15 1 HET K A 16 1 HET RNR A 17 36 HET K B 13 1 HETNAM K POTASSIUM ION HETNAM RNR 3,6-BIS(3-(3'-(R)-FLUOROPYRROLINDINO)PROPIONAMIDO) HETNAM 2 RNR ACRIDINE HETSYN RNR N,N'-ACRIDINE-3,6-DIYLBIS{3-[(3R)-3-FLUOROPYRROLIDIN-1- HETSYN 2 RNR YL]PROPANAMIDE} FORMUL 3 K 4(K 1+) FORMUL 6 RNR C27 H31 F2 N5 O2 FORMUL 8 HOH *177(H2 O) LINK O6 DG A 1 K K A 14 1555 1555 2.93 LINK O6 DG A 1 K K B 13 1555 1555 3.22 LINK O6 DG A 2 K K A 14 1555 1555 3.08 LINK O6 DG A 2 K K A 15 1555 1555 3.00 LINK O6 DG A 3 K K A 15 1555 1555 3.03 LINK O6 DG A 3 K K A 16 1555 1555 3.21 LINK O6 DG A 4 K K A 16 1555 1555 2.93 LINK O6 DG A 9 K K A 16 1555 1555 2.90 LINK O6 DG A 10 K K A 15 1555 1555 2.99 LINK O6 DG A 10 K K A 16 1555 1555 3.25 LINK O6 DG A 11 K K A 14 1555 1555 2.98 LINK O6 DG A 11 K K A 15 1555 1555 3.12 LINK O6 DG A 12 K K A 14 1555 1555 3.02 LINK O6 DG A 12 K K B 13 1555 1555 3.02 LINK K K A 14 O6 DG B 3 1555 1555 3.04 LINK K K A 14 O6 DG B 4 1555 1555 3.07 LINK K K A 14 O6 DG B 9 1555 1555 3.08 LINK K K A 14 O6 DG B 10 1555 1555 3.06 LINK K K A 15 O6 DG B 2 1555 1555 2.93 LINK K K A 15 O6 DG B 3 1555 1555 3.02 LINK K K A 15 O6 DG B 10 1555 1555 3.12 LINK K K A 15 O6 DG B 11 1555 1555 3.00 LINK K K A 16 O6 DG B 1 1555 1555 2.93 LINK K K A 16 O6 DG B 2 1555 1555 3.10 LINK K K A 16 O6 DG B 11 1555 1555 3.22 LINK K K A 16 O6 DG B 12 1555 1555 2.89 LINK O6 DG B 4 K K B 13 1555 1555 3.13 LINK O2 DT B 5 K K B 13 1555 1555 3.01 LINK O2 DT B 7 K K B 13 1555 1555 2.82 LINK O6 DG B 9 K K B 13 1555 1555 3.14 LINK K K B 13 O HOH B 14 1555 1555 2.91 LINK K K B 13 O HOH B 24 1555 1555 3.17 SITE 1 AC1 10 DG A 1 DG A 2 DG A 11 DG A 12 SITE 2 AC1 10 K A 15 DG B 3 DG B 4 DG B 9 SITE 3 AC1 10 DG B 10 K B 13 SITE 1 AC2 10 DG A 2 DG A 3 DG A 10 DG A 11 SITE 2 AC2 10 K A 14 K A 16 DG B 2 DG B 3 SITE 3 AC2 10 DG B 10 DG B 11 SITE 1 AC3 9 DG A 3 DG A 4 DG A 9 DG A 10 SITE 2 AC3 9 K A 15 DG B 1 DG B 2 DG B 11 SITE 3 AC3 9 DG B 12 SITE 1 AC4 8 DT A 6 DT A 7 DG A 9 DG B 1 SITE 2 AC4 8 DT B 8 DG B 9 DG B 12 HOH B 26 SITE 1 AC5 8 DG A 1 DG A 12 K A 14 DG B 4 SITE 2 AC5 8 DT B 5 DT B 7 DG B 9 HOH B 14 CRYST1 57.800 44.460 28.140 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035537 0.00000