data_3O1R # _entry.id 3O1R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3O1R pdb_00003o1r 10.2210/pdb3o1r/pdb NDB NA0630 ? ? RCSB RCSB060555 ? ? WWPDB D_1000060555 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-06-19 4 'Structure model' 1 3 2014-05-28 5 'Structure model' 1 4 2023-09-06 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Non-polymer description' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site 10 6 'Structure model' pdbx_entry_details 11 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.value' 16 5 'Structure model' '_struct_conn.conn_type_id' 17 5 'Structure model' '_struct_conn.id' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_conn_type.id' 35 5 'Structure model' '_struct_ref_seq_dif.details' 36 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3O1R _pdbx_database_status.recvd_initial_deposition_date 2010-07-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O1M . unspecified PDB 3O1O . unspecified PDB 3O1P . unspecified PDB 3O1S . unspecified PDB 3O1T . unspecified PDB 3O1U . unspecified PDB 3O1V . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yi, C.' 1 'Jia, G.' 2 'Hou, G.' 3 'Dai, Q.' 4 'Zhang, W.' 5 'Zheng, G.' 6 'Jian, X.' 7 'Yang, C.-G.' 8 'Cui, Q.' 9 'He, C.' 10 # _citation.id primary _citation.title 'Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase.' _citation.journal_abbrev Nature _citation.journal_volume 468 _citation.page_first 330 _citation.page_last 333 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21068844 _citation.pdbx_database_id_DOI 10.1038/nature09497 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yi, C.' 1 ? primary 'Jia, G.' 2 ? primary 'Hou, G.' 3 ? primary 'Dai, Q.' 4 ? primary 'Zhang, W.' 5 ? primary 'Zheng, G.' 6 ? primary 'Jian, X.' 7 ? primary 'Yang, C.G.' 8 ? primary 'Cui, Q.' 9 ? primary 'He, C.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase AlkB' 22961.303 1 1.14.11.- S129C 'N-terminus 11 amino acid truncated AlkB (UNP residues 12 to 216)' ? 2 polymer syn ;DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDK)P*AP*CP*CP*GP*T)-3') ; 3744.575 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3') ; 3950.598 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 359 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein AlkB' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; A ? 2 polydeoxyribonucleotide no yes '(DA)(DG)(DG)(DT)(DA)(DA)(MDK)(DA)(2YR)(DC)(DG)(DT)' AGGTAAXAXCGT B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DC)(DG)(DG)(DT)(DA)(DT)(DT)(DA)(DC)(DC)(DT)' AACGGTATTACCT C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 '2-OXOGLUTARIC ACID' AKG 6 GLYCEROL GOL 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 GLU n 1 4 PRO n 1 5 LEU n 1 6 ALA n 1 7 ALA n 1 8 GLY n 1 9 ALA n 1 10 VAL n 1 11 ILE n 1 12 LEU n 1 13 ARG n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 PHE n 1 18 ASN n 1 19 ALA n 1 20 ALA n 1 21 GLU n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 ARG n 1 26 ASP n 1 27 ILE n 1 28 ASN n 1 29 ASP n 1 30 VAL n 1 31 ALA n 1 32 SER n 1 33 GLN n 1 34 SER n 1 35 PRO n 1 36 PHE n 1 37 ARG n 1 38 GLN n 1 39 MET n 1 40 VAL n 1 41 THR n 1 42 PRO n 1 43 GLY n 1 44 GLY n 1 45 TYR n 1 46 THR n 1 47 MET n 1 48 SER n 1 49 VAL n 1 50 ALA n 1 51 MET n 1 52 THR n 1 53 ASN n 1 54 CYS n 1 55 GLY n 1 56 HIS n 1 57 LEU n 1 58 GLY n 1 59 TRP n 1 60 THR n 1 61 THR n 1 62 HIS n 1 63 ARG n 1 64 GLN n 1 65 GLY n 1 66 TYR n 1 67 LEU n 1 68 TYR n 1 69 SER n 1 70 PRO n 1 71 ILE n 1 72 ASP n 1 73 PRO n 1 74 GLN n 1 75 THR n 1 76 ASN n 1 77 LYS n 1 78 PRO n 1 79 TRP n 1 80 PRO n 1 81 ALA n 1 82 MET n 1 83 PRO n 1 84 GLN n 1 85 SER n 1 86 PHE n 1 87 HIS n 1 88 ASN n 1 89 LEU n 1 90 CYS n 1 91 GLN n 1 92 ARG n 1 93 ALA n 1 94 ALA n 1 95 THR n 1 96 ALA n 1 97 ALA n 1 98 GLY n 1 99 TYR n 1 100 PRO n 1 101 ASP n 1 102 PHE n 1 103 GLN n 1 104 PRO n 1 105 ASP n 1 106 ALA n 1 107 CYS n 1 108 LEU n 1 109 ILE n 1 110 ASN n 1 111 ARG n 1 112 TYR n 1 113 ALA n 1 114 PRO n 1 115 GLY n 1 116 ALA n 1 117 LYS n 1 118 LEU n 1 119 CYS n 1 120 LEU n 1 121 HIS n 1 122 GLN n 1 123 ASP n 1 124 LYS n 1 125 ASP n 1 126 GLU n 1 127 PRO n 1 128 ASP n 1 129 LEU n 1 130 ARG n 1 131 ALA n 1 132 PRO n 1 133 ILE n 1 134 VAL n 1 135 SER n 1 136 VAL n 1 137 SER n 1 138 LEU n 1 139 GLY n 1 140 LEU n 1 141 PRO n 1 142 ALA n 1 143 ILE n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 GLY n 1 148 GLY n 1 149 LEU n 1 150 LYS n 1 151 ARG n 1 152 ASN n 1 153 ASP n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ARG n 1 158 LEU n 1 159 LEU n 1 160 LEU n 1 161 GLU n 1 162 HIS n 1 163 GLY n 1 164 ASP n 1 165 VAL n 1 166 VAL n 1 167 VAL n 1 168 TRP n 1 169 GLY n 1 170 GLY n 1 171 GLU n 1 172 SER n 1 173 ARG n 1 174 LEU n 1 175 PHE n 1 176 TYR n 1 177 HIS n 1 178 GLY n 1 179 ILE n 1 180 GLN n 1 181 PRO n 1 182 LEU n 1 183 LYS n 1 184 ALA n 1 185 GLY n 1 186 PHE n 1 187 HIS n 1 188 PRO n 1 189 LEU n 1 190 THR n 1 191 ILE n 1 192 ASP n 1 193 CYS n 1 194 ARG n 1 195 TYR n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 GLN n 1 202 ALA n 1 203 GLY n 1 204 LYS n 1 205 LYS n 1 206 GLU n 2 1 DA n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DA n 2 7 MDK n 2 8 DA n 2 9 2YR n 2 10 DC n 2 11 DG n 2 12 DT n 3 1 DA n 3 2 DA n 3 3 DC n 3 4 DG n 3 5 DG n 3 6 DT n 3 7 DA n 3 8 DT n 3 9 DT n 3 10 DA n 3 11 DC n 3 12 DC n 3 13 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'alkB, aidD, b2212, JW2200' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain D3-157 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Solid state DNA synthesizer.' 3 1 sample ? ? ? ? ? 'Solid state DNA synthesizer.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MDK 'DNA linking' . '4-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3-methylpyridin-2(1H)-one' ? 'C11 H17 N2 O7 P' 320.236 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 11 ? ? ? A . n A 1 2 GLN 2 12 ? ? ? A . n A 1 3 GLU 3 13 13 GLU GLU A . n A 1 4 PRO 4 14 14 PRO PRO A . n A 1 5 LEU 5 15 15 LEU LEU A . n A 1 6 ALA 6 16 16 ALA ALA A . n A 1 7 ALA 7 17 17 ALA ALA A . n A 1 8 GLY 8 18 18 GLY GLY A . n A 1 9 ALA 9 19 19 ALA ALA A . n A 1 10 VAL 10 20 20 VAL VAL A . n A 1 11 ILE 11 21 21 ILE ILE A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 ARG 13 23 23 ARG ARG A . n A 1 14 ARG 14 24 24 ARG ARG A . n A 1 15 PHE 15 25 25 PHE PHE A . n A 1 16 ALA 16 26 26 ALA ALA A . n A 1 17 PHE 17 27 27 PHE PHE A . n A 1 18 ASN 18 28 28 ASN ASN A . n A 1 19 ALA 19 29 29 ALA ALA A . n A 1 20 ALA 20 30 30 ALA ALA A . n A 1 21 GLU 21 31 31 GLU GLU A . n A 1 22 GLN 22 32 32 GLN GLN A . n A 1 23 LEU 23 33 33 LEU LEU A . n A 1 24 ILE 24 34 34 ILE ILE A . n A 1 25 ARG 25 35 35 ARG ARG A . n A 1 26 ASP 26 36 36 ASP ASP A . n A 1 27 ILE 27 37 37 ILE ILE A . n A 1 28 ASN 28 38 38 ASN ASN A . n A 1 29 ASP 29 39 39 ASP ASP A . n A 1 30 VAL 30 40 40 VAL VAL A . n A 1 31 ALA 31 41 41 ALA ALA A . n A 1 32 SER 32 42 42 SER SER A . n A 1 33 GLN 33 43 43 GLN GLN A . n A 1 34 SER 34 44 44 SER SER A . n A 1 35 PRO 35 45 45 PRO PRO A . n A 1 36 PHE 36 46 46 PHE PHE A . n A 1 37 ARG 37 47 47 ARG ARG A . n A 1 38 GLN 38 48 48 GLN GLN A . n A 1 39 MET 39 49 49 MET MET A . n A 1 40 VAL 40 50 50 VAL VAL A . n A 1 41 THR 41 51 51 THR THR A . n A 1 42 PRO 42 52 52 PRO PRO A . n A 1 43 GLY 43 53 53 GLY GLY A . n A 1 44 GLY 44 54 54 GLY GLY A . n A 1 45 TYR 45 55 55 TYR TYR A . n A 1 46 THR 46 56 56 THR THR A . n A 1 47 MET 47 57 57 MET MET A . n A 1 48 SER 48 58 58 SER SER A . n A 1 49 VAL 49 59 59 VAL VAL A . n A 1 50 ALA 50 60 60 ALA ALA A . n A 1 51 MET 51 61 61 MET MET A . n A 1 52 THR 52 62 62 THR THR A . n A 1 53 ASN 53 63 63 ASN ASN A . n A 1 54 CYS 54 64 64 CYS CYS A . n A 1 55 GLY 55 65 65 GLY GLY A . n A 1 56 HIS 56 66 66 HIS HIS A . n A 1 57 LEU 57 67 67 LEU LEU A . n A 1 58 GLY 58 68 68 GLY GLY A . n A 1 59 TRP 59 69 69 TRP TRP A . n A 1 60 THR 60 70 70 THR THR A . n A 1 61 THR 61 71 71 THR THR A . n A 1 62 HIS 62 72 72 HIS HIS A . n A 1 63 ARG 63 73 73 ARG ARG A . n A 1 64 GLN 64 74 74 GLN GLN A . n A 1 65 GLY 65 75 75 GLY GLY A . n A 1 66 TYR 66 76 76 TYR TYR A . n A 1 67 LEU 67 77 77 LEU LEU A . n A 1 68 TYR 68 78 78 TYR TYR A . n A 1 69 SER 69 79 79 SER SER A . n A 1 70 PRO 70 80 80 PRO PRO A . n A 1 71 ILE 71 81 81 ILE ILE A . n A 1 72 ASP 72 82 82 ASP ASP A . n A 1 73 PRO 73 83 83 PRO PRO A . n A 1 74 GLN 74 84 84 GLN GLN A . n A 1 75 THR 75 85 85 THR THR A . n A 1 76 ASN 76 86 86 ASN ASN A . n A 1 77 LYS 77 87 87 LYS LYS A . n A 1 78 PRO 78 88 88 PRO PRO A . n A 1 79 TRP 79 89 89 TRP TRP A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 ALA 81 91 91 ALA ALA A . n A 1 82 MET 82 92 92 MET MET A . n A 1 83 PRO 83 93 93 PRO PRO A . n A 1 84 GLN 84 94 94 GLN GLN A . n A 1 85 SER 85 95 95 SER SER A . n A 1 86 PHE 86 96 96 PHE PHE A . n A 1 87 HIS 87 97 97 HIS HIS A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 LEU 89 99 99 LEU LEU A . n A 1 90 CYS 90 100 100 CYS CYS A . n A 1 91 GLN 91 101 101 GLN GLN A . n A 1 92 ARG 92 102 102 ARG ARG A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ALA 94 104 104 ALA ALA A . n A 1 95 THR 95 105 105 THR THR A . n A 1 96 ALA 96 106 106 ALA ALA A . n A 1 97 ALA 97 107 107 ALA ALA A . n A 1 98 GLY 98 108 108 GLY GLY A . n A 1 99 TYR 99 109 109 TYR TYR A . n A 1 100 PRO 100 110 110 PRO PRO A . n A 1 101 ASP 101 111 111 ASP ASP A . n A 1 102 PHE 102 112 112 PHE PHE A . n A 1 103 GLN 103 113 113 GLN GLN A . n A 1 104 PRO 104 114 114 PRO PRO A . n A 1 105 ASP 105 115 115 ASP ASP A . n A 1 106 ALA 106 116 116 ALA ALA A . n A 1 107 CYS 107 117 117 CYS CYS A . n A 1 108 LEU 108 118 118 LEU LEU A . n A 1 109 ILE 109 119 119 ILE ILE A . n A 1 110 ASN 110 120 120 ASN ASN A . n A 1 111 ARG 111 121 121 ARG ARG A . n A 1 112 TYR 112 122 122 TYR TYR A . n A 1 113 ALA 113 123 123 ALA ALA A . n A 1 114 PRO 114 124 124 PRO PRO A . n A 1 115 GLY 115 125 125 GLY GLY A . n A 1 116 ALA 116 126 126 ALA ALA A . n A 1 117 LYS 117 127 127 LYS LYS A . n A 1 118 LEU 118 128 128 LEU LEU A . n A 1 119 CYS 119 129 129 CYS CYS A . n A 1 120 LEU 120 130 130 LEU LEU A . n A 1 121 HIS 121 131 131 HIS HIS A . n A 1 122 GLN 122 132 132 GLN GLN A . n A 1 123 ASP 123 133 133 ASP ASP A . n A 1 124 LYS 124 134 134 LYS LYS A . n A 1 125 ASP 125 135 135 ASP ASP A . n A 1 126 GLU 126 136 136 GLU GLU A . n A 1 127 PRO 127 137 137 PRO PRO A . n A 1 128 ASP 128 138 138 ASP ASP A . n A 1 129 LEU 129 139 139 LEU LEU A . n A 1 130 ARG 130 140 140 ARG ARG A . n A 1 131 ALA 131 141 141 ALA ALA A . n A 1 132 PRO 132 142 142 PRO PRO A . n A 1 133 ILE 133 143 143 ILE ILE A . n A 1 134 VAL 134 144 144 VAL VAL A . n A 1 135 SER 135 145 145 SER SER A . n A 1 136 VAL 136 146 146 VAL VAL A . n A 1 137 SER 137 147 147 SER SER A . n A 1 138 LEU 138 148 148 LEU LEU A . n A 1 139 GLY 139 149 149 GLY GLY A . n A 1 140 LEU 140 150 150 LEU LEU A . n A 1 141 PRO 141 151 151 PRO PRO A . n A 1 142 ALA 142 152 152 ALA ALA A . n A 1 143 ILE 143 153 153 ILE ILE A . n A 1 144 PHE 144 154 154 PHE PHE A . n A 1 145 GLN 145 155 155 GLN GLN A . n A 1 146 PHE 146 156 156 PHE PHE A . n A 1 147 GLY 147 157 157 GLY GLY A . n A 1 148 GLY 148 158 158 GLY GLY A . n A 1 149 LEU 149 159 159 LEU LEU A . n A 1 150 LYS 150 160 160 LYS LYS A . n A 1 151 ARG 151 161 161 ARG ARG A . n A 1 152 ASN 152 162 162 ASN ASN A . n A 1 153 ASP 153 163 163 ASP ASP A . n A 1 154 PRO 154 164 164 PRO PRO A . n A 1 155 LEU 155 165 165 LEU LEU A . n A 1 156 LYS 156 166 166 LYS LYS A . n A 1 157 ARG 157 167 167 ARG ARG A . n A 1 158 LEU 158 168 168 LEU LEU A . n A 1 159 LEU 159 169 169 LEU LEU A . n A 1 160 LEU 160 170 170 LEU LEU A . n A 1 161 GLU 161 171 171 GLU GLU A . n A 1 162 HIS 162 172 172 HIS HIS A . n A 1 163 GLY 163 173 173 GLY GLY A . n A 1 164 ASP 164 174 174 ASP ASP A . n A 1 165 VAL 165 175 175 VAL VAL A . n A 1 166 VAL 166 176 176 VAL VAL A . n A 1 167 VAL 167 177 177 VAL VAL A . n A 1 168 TRP 168 178 178 TRP TRP A . n A 1 169 GLY 169 179 179 GLY GLY A . n A 1 170 GLY 170 180 180 GLY GLY A . n A 1 171 GLU 171 181 181 GLU GLU A . n A 1 172 SER 172 182 182 SER SER A . n A 1 173 ARG 173 183 183 ARG ARG A . n A 1 174 LEU 174 184 184 LEU LEU A . n A 1 175 PHE 175 185 185 PHE PHE A . n A 1 176 TYR 176 186 186 TYR TYR A . n A 1 177 HIS 177 187 187 HIS HIS A . n A 1 178 GLY 178 188 188 GLY GLY A . n A 1 179 ILE 179 189 189 ILE ILE A . n A 1 180 GLN 180 190 190 GLN GLN A . n A 1 181 PRO 181 191 191 PRO PRO A . n A 1 182 LEU 182 192 192 LEU LEU A . n A 1 183 LYS 183 193 193 LYS LYS A . n A 1 184 ALA 184 194 194 ALA ALA A . n A 1 185 GLY 185 195 195 GLY GLY A . n A 1 186 PHE 186 196 196 PHE PHE A . n A 1 187 HIS 187 197 197 HIS HIS A . n A 1 188 PRO 188 198 198 PRO PRO A . n A 1 189 LEU 189 199 199 LEU LEU A . n A 1 190 THR 190 200 200 THR THR A . n A 1 191 ILE 191 201 201 ILE ILE A . n A 1 192 ASP 192 202 202 ASP ASP A . n A 1 193 CYS 193 203 203 CYS CYS A . n A 1 194 ARG 194 204 204 ARG ARG A . n A 1 195 TYR 195 205 205 TYR TYR A . n A 1 196 ASN 196 206 206 ASN ASN A . n A 1 197 LEU 197 207 207 LEU LEU A . n A 1 198 THR 198 208 208 THR THR A . n A 1 199 PHE 199 209 209 PHE PHE A . n A 1 200 ARG 200 210 210 ARG ARG A . n A 1 201 GLN 201 211 211 GLN GLN A . n A 1 202 ALA 202 212 212 ALA ALA A . n A 1 203 GLY 203 213 213 GLY GLY A . n A 1 204 LYS 204 214 214 LYS LYS A . n A 1 205 LYS 205 215 ? ? ? A . n A 1 206 GLU 206 216 ? ? ? A . n B 2 1 DA 1 2 2 DA DA B . n B 2 2 DG 2 3 3 DG DG B . n B 2 3 DG 3 4 4 DG DG B . n B 2 4 DT 4 5 5 DT DT B . n B 2 5 DA 5 6 6 DA DA B . n B 2 6 DA 6 7 7 DA DA B . n B 2 7 MDK 7 8 8 MDK MDK B . n B 2 8 DA 8 9 9 DA DA B . n B 2 9 2YR 9 10 10 2YR DC B . n B 2 10 DC 10 11 11 DC DC B . n B 2 11 DG 11 12 12 DG DG B . n B 2 12 DT 12 13 13 DT DT B . n C 3 1 DA 1 1 1 DA DA C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DG 5 5 5 DG DG C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 DC 11 11 11 DC DC C . n C 3 12 DC 12 12 12 DC DC C . n C 3 13 DT 13 13 13 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 301 1 MN MN A . E 5 AKG 1 302 217 AKG AKG A . F 6 GOL 1 303 218 GOL GOL A . G 7 HOH 1 401 2 HOH HOH A . G 7 HOH 2 402 4 HOH HOH A . G 7 HOH 3 403 5 HOH HOH A . G 7 HOH 4 404 6 HOH HOH A . G 7 HOH 5 405 8 HOH HOH A . G 7 HOH 6 406 9 HOH HOH A . G 7 HOH 7 407 219 HOH HOH A . G 7 HOH 8 408 220 HOH HOH A . G 7 HOH 9 409 221 HOH HOH A . G 7 HOH 10 410 222 HOH HOH A . G 7 HOH 11 411 223 HOH HOH A . G 7 HOH 12 412 224 HOH HOH A . G 7 HOH 13 413 225 HOH HOH A . G 7 HOH 14 414 226 HOH HOH A . G 7 HOH 15 415 227 HOH HOH A . G 7 HOH 16 416 228 HOH HOH A . G 7 HOH 17 417 229 HOH HOH A . G 7 HOH 18 418 230 HOH HOH A . G 7 HOH 19 419 231 HOH HOH A . G 7 HOH 20 420 232 HOH HOH A . G 7 HOH 21 421 235 HOH HOH A . G 7 HOH 22 422 236 HOH HOH A . G 7 HOH 23 423 237 HOH HOH A . G 7 HOH 24 424 238 HOH HOH A . G 7 HOH 25 425 240 HOH HOH A . G 7 HOH 26 426 241 HOH HOH A . G 7 HOH 27 427 242 HOH HOH A . G 7 HOH 28 428 243 HOH HOH A . G 7 HOH 29 429 244 HOH HOH A . G 7 HOH 30 430 245 HOH HOH A . G 7 HOH 31 431 247 HOH HOH A . G 7 HOH 32 432 248 HOH HOH A . G 7 HOH 33 433 249 HOH HOH A . G 7 HOH 34 434 250 HOH HOH A . G 7 HOH 35 435 251 HOH HOH A . G 7 HOH 36 436 252 HOH HOH A . G 7 HOH 37 437 253 HOH HOH A . G 7 HOH 38 438 254 HOH HOH A . G 7 HOH 39 439 255 HOH HOH A . G 7 HOH 40 440 256 HOH HOH A . G 7 HOH 41 441 257 HOH HOH A . G 7 HOH 42 442 258 HOH HOH A . G 7 HOH 43 443 259 HOH HOH A . G 7 HOH 44 444 260 HOH HOH A . G 7 HOH 45 445 261 HOH HOH A . G 7 HOH 46 446 262 HOH HOH A . G 7 HOH 47 447 263 HOH HOH A . G 7 HOH 48 448 265 HOH HOH A . G 7 HOH 49 449 267 HOH HOH A . G 7 HOH 50 450 269 HOH HOH A . G 7 HOH 51 451 271 HOH HOH A . G 7 HOH 52 452 272 HOH HOH A . G 7 HOH 53 453 275 HOH HOH A . G 7 HOH 54 454 276 HOH HOH A . G 7 HOH 55 455 277 HOH HOH A . G 7 HOH 56 456 278 HOH HOH A . G 7 HOH 57 457 279 HOH HOH A . G 7 HOH 58 458 280 HOH HOH A . G 7 HOH 59 459 281 HOH HOH A . G 7 HOH 60 460 282 HOH HOH A . G 7 HOH 61 461 283 HOH HOH A . G 7 HOH 62 462 284 HOH HOH A . G 7 HOH 63 463 285 HOH HOH A . G 7 HOH 64 464 286 HOH HOH A . G 7 HOH 65 465 287 HOH HOH A . G 7 HOH 66 466 288 HOH HOH A . G 7 HOH 67 467 289 HOH HOH A . G 7 HOH 68 468 290 HOH HOH A . G 7 HOH 69 469 291 HOH HOH A . G 7 HOH 70 470 292 HOH HOH A . G 7 HOH 71 471 293 HOH HOH A . G 7 HOH 72 472 294 HOH HOH A . G 7 HOH 73 473 295 HOH HOH A . G 7 HOH 74 474 296 HOH HOH A . G 7 HOH 75 475 297 HOH HOH A . G 7 HOH 76 476 298 HOH HOH A . G 7 HOH 77 477 299 HOH HOH A . G 7 HOH 78 478 300 HOH HOH A . G 7 HOH 79 479 301 HOH HOH A . G 7 HOH 80 480 302 HOH HOH A . G 7 HOH 81 481 303 HOH HOH A . G 7 HOH 82 482 304 HOH HOH A . G 7 HOH 83 483 305 HOH HOH A . G 7 HOH 84 484 306 HOH HOH A . G 7 HOH 85 485 307 HOH HOH A . G 7 HOH 86 486 308 HOH HOH A . G 7 HOH 87 487 309 HOH HOH A . G 7 HOH 88 488 310 HOH HOH A . G 7 HOH 89 489 311 HOH HOH A . G 7 HOH 90 490 312 HOH HOH A . G 7 HOH 91 491 313 HOH HOH A . G 7 HOH 92 492 314 HOH HOH A . G 7 HOH 93 493 315 HOH HOH A . G 7 HOH 94 494 316 HOH HOH A . G 7 HOH 95 495 317 HOH HOH A . G 7 HOH 96 496 318 HOH HOH A . G 7 HOH 97 497 319 HOH HOH A . G 7 HOH 98 498 320 HOH HOH A . G 7 HOH 99 499 321 HOH HOH A . G 7 HOH 100 500 322 HOH HOH A . G 7 HOH 101 501 323 HOH HOH A . G 7 HOH 102 502 324 HOH HOH A . G 7 HOH 103 503 325 HOH HOH A . G 7 HOH 104 504 326 HOH HOH A . G 7 HOH 105 505 327 HOH HOH A . G 7 HOH 106 506 328 HOH HOH A . G 7 HOH 107 507 329 HOH HOH A . G 7 HOH 108 508 330 HOH HOH A . G 7 HOH 109 509 331 HOH HOH A . G 7 HOH 110 510 332 HOH HOH A . G 7 HOH 111 511 333 HOH HOH A . G 7 HOH 112 512 334 HOH HOH A . G 7 HOH 113 513 335 HOH HOH A . G 7 HOH 114 514 336 HOH HOH A . G 7 HOH 115 515 337 HOH HOH A . G 7 HOH 116 516 338 HOH HOH A . G 7 HOH 117 517 339 HOH HOH A . G 7 HOH 118 518 340 HOH HOH A . G 7 HOH 119 519 341 HOH HOH A . G 7 HOH 120 520 342 HOH HOH A . G 7 HOH 121 521 343 HOH HOH A . G 7 HOH 122 522 344 HOH HOH A . G 7 HOH 123 523 346 HOH HOH A . G 7 HOH 124 524 347 HOH HOH A . G 7 HOH 125 525 348 HOH HOH A . G 7 HOH 126 526 349 HOH HOH A . G 7 HOH 127 527 350 HOH HOH A . G 7 HOH 128 528 351 HOH HOH A . G 7 HOH 129 529 352 HOH HOH A . G 7 HOH 130 530 353 HOH HOH A . G 7 HOH 131 531 354 HOH HOH A . G 7 HOH 132 532 356 HOH HOH A . G 7 HOH 133 533 358 HOH HOH A . G 7 HOH 134 534 359 HOH HOH A . G 7 HOH 135 535 360 HOH HOH A . G 7 HOH 136 536 361 HOH HOH A . G 7 HOH 137 537 362 HOH HOH A . G 7 HOH 138 538 363 HOH HOH A . G 7 HOH 139 539 364 HOH HOH A . G 7 HOH 140 540 365 HOH HOH A . G 7 HOH 141 541 366 HOH HOH A . G 7 HOH 142 542 367 HOH HOH A . G 7 HOH 143 543 368 HOH HOH A . G 7 HOH 144 544 369 HOH HOH A . G 7 HOH 145 545 370 HOH HOH A . G 7 HOH 146 546 371 HOH HOH A . G 7 HOH 147 547 372 HOH HOH A . G 7 HOH 148 548 373 HOH HOH A . G 7 HOH 149 549 374 HOH HOH A . G 7 HOH 150 550 375 HOH HOH A . G 7 HOH 151 551 376 HOH HOH A . G 7 HOH 152 552 377 HOH HOH A . G 7 HOH 153 553 378 HOH HOH A . G 7 HOH 154 554 379 HOH HOH A . G 7 HOH 155 555 380 HOH HOH A . G 7 HOH 156 556 381 HOH HOH A . G 7 HOH 157 557 382 HOH HOH A . G 7 HOH 158 558 383 HOH HOH A . G 7 HOH 159 559 384 HOH HOH A . G 7 HOH 160 560 385 HOH HOH A . G 7 HOH 161 561 386 HOH HOH A . G 7 HOH 162 562 387 HOH HOH A . G 7 HOH 163 563 388 HOH HOH A . G 7 HOH 164 564 389 HOH HOH A . G 7 HOH 165 565 390 HOH HOH A . G 7 HOH 166 566 391 HOH HOH A . G 7 HOH 167 567 392 HOH HOH A . G 7 HOH 168 568 393 HOH HOH A . G 7 HOH 169 569 394 HOH HOH A . G 7 HOH 170 570 395 HOH HOH A . G 7 HOH 171 571 396 HOH HOH A . G 7 HOH 172 572 397 HOH HOH A . G 7 HOH 173 573 398 HOH HOH A . G 7 HOH 174 574 399 HOH HOH A . G 7 HOH 175 575 400 HOH HOH A . G 7 HOH 176 576 401 HOH HOH A . G 7 HOH 177 577 402 HOH HOH A . G 7 HOH 178 578 403 HOH HOH A . G 7 HOH 179 579 404 HOH HOH A . G 7 HOH 180 580 405 HOH HOH A . G 7 HOH 181 581 406 HOH HOH A . G 7 HOH 182 582 407 HOH HOH A . G 7 HOH 183 583 408 HOH HOH A . G 7 HOH 184 584 409 HOH HOH A . G 7 HOH 185 585 410 HOH HOH A . G 7 HOH 186 586 411 HOH HOH A . G 7 HOH 187 587 412 HOH HOH A . G 7 HOH 188 588 413 HOH HOH A . G 7 HOH 189 589 414 HOH HOH A . G 7 HOH 190 590 415 HOH HOH A . G 7 HOH 191 591 416 HOH HOH A . G 7 HOH 192 592 417 HOH HOH A . G 7 HOH 193 593 418 HOH HOH A . G 7 HOH 194 594 419 HOH HOH A . G 7 HOH 195 595 420 HOH HOH A . G 7 HOH 196 596 421 HOH HOH A . G 7 HOH 197 597 422 HOH HOH A . G 7 HOH 198 598 423 HOH HOH A . G 7 HOH 199 599 424 HOH HOH A . G 7 HOH 200 600 425 HOH HOH A . G 7 HOH 201 601 426 HOH HOH A . G 7 HOH 202 602 427 HOH HOH A . G 7 HOH 203 603 428 HOH HOH A . G 7 HOH 204 604 429 HOH HOH A . G 7 HOH 205 605 430 HOH HOH A . G 7 HOH 206 606 431 HOH HOH A . G 7 HOH 207 607 432 HOH HOH A . G 7 HOH 208 608 433 HOH HOH A . G 7 HOH 209 609 434 HOH HOH A . G 7 HOH 210 610 435 HOH HOH A . G 7 HOH 211 611 436 HOH HOH A . G 7 HOH 212 612 437 HOH HOH A . G 7 HOH 213 613 438 HOH HOH A . G 7 HOH 214 614 439 HOH HOH A . G 7 HOH 215 615 440 HOH HOH A . G 7 HOH 216 616 441 HOH HOH A . G 7 HOH 217 617 442 HOH HOH A . G 7 HOH 218 618 443 HOH HOH A . G 7 HOH 219 619 444 HOH HOH A . G 7 HOH 220 620 445 HOH HOH A . G 7 HOH 221 621 446 HOH HOH A . G 7 HOH 222 622 447 HOH HOH A . G 7 HOH 223 623 448 HOH HOH A . G 7 HOH 224 624 449 HOH HOH A . G 7 HOH 225 625 450 HOH HOH A . G 7 HOH 226 626 451 HOH HOH A . G 7 HOH 227 627 452 HOH HOH A . G 7 HOH 228 628 453 HOH HOH A . G 7 HOH 229 629 454 HOH HOH A . G 7 HOH 230 630 455 HOH HOH A . G 7 HOH 231 631 456 HOH HOH A . G 7 HOH 232 632 457 HOH HOH A . G 7 HOH 233 633 458 HOH HOH A . G 7 HOH 234 634 459 HOH HOH A . G 7 HOH 235 635 460 HOH HOH A . G 7 HOH 236 636 461 HOH HOH A . G 7 HOH 237 637 462 HOH HOH A . G 7 HOH 238 638 463 HOH HOH A . G 7 HOH 239 639 464 HOH HOH A . G 7 HOH 240 640 465 HOH HOH A . G 7 HOH 241 641 466 HOH HOH A . G 7 HOH 242 642 467 HOH HOH A . G 7 HOH 243 643 468 HOH HOH A . G 7 HOH 244 644 469 HOH HOH A . G 7 HOH 245 645 470 HOH HOH A . G 7 HOH 246 646 471 HOH HOH A . G 7 HOH 247 647 472 HOH HOH A . G 7 HOH 248 648 473 HOH HOH A . G 7 HOH 249 649 474 HOH HOH A . G 7 HOH 250 650 475 HOH HOH A . G 7 HOH 251 651 476 HOH HOH A . G 7 HOH 252 652 477 HOH HOH A . G 7 HOH 253 653 478 HOH HOH A . G 7 HOH 254 654 479 HOH HOH A . G 7 HOH 255 655 480 HOH HOH A . G 7 HOH 256 656 481 HOH HOH A . G 7 HOH 257 657 482 HOH HOH A . G 7 HOH 258 658 483 HOH HOH A . G 7 HOH 259 659 484 HOH HOH A . G 7 HOH 260 660 485 HOH HOH A . G 7 HOH 261 661 486 HOH HOH A . G 7 HOH 262 662 487 HOH HOH A . G 7 HOH 263 663 488 HOH HOH A . G 7 HOH 264 664 489 HOH HOH A . G 7 HOH 265 665 490 HOH HOH A . G 7 HOH 266 666 491 HOH HOH A . G 7 HOH 267 667 492 HOH HOH A . G 7 HOH 268 668 493 HOH HOH A . G 7 HOH 269 669 494 HOH HOH A . G 7 HOH 270 670 495 HOH HOH A . H 7 HOH 1 101 14 HOH HOH B . H 7 HOH 2 102 15 HOH HOH B . H 7 HOH 3 103 16 HOH HOH B . H 7 HOH 4 104 17 HOH HOH B . H 7 HOH 5 105 31 HOH HOH B . H 7 HOH 6 106 42 HOH HOH B . H 7 HOH 7 107 43 HOH HOH B . H 7 HOH 8 108 48 HOH HOH B . H 7 HOH 9 109 62 HOH HOH B . H 7 HOH 10 110 64 HOH HOH B . H 7 HOH 11 111 70 HOH HOH B . H 7 HOH 12 112 74 HOH HOH B . H 7 HOH 13 113 80 HOH HOH B . H 7 HOH 14 114 84 HOH HOH B . H 7 HOH 15 115 92 HOH HOH B . H 7 HOH 16 116 94 HOH HOH B . H 7 HOH 17 117 98 HOH HOH B . H 7 HOH 18 118 99 HOH HOH B . H 7 HOH 19 119 105 HOH HOH B . H 7 HOH 20 120 107 HOH HOH B . H 7 HOH 21 121 111 HOH HOH B . H 7 HOH 22 122 119 HOH HOH B . H 7 HOH 23 123 123 HOH HOH B . H 7 HOH 24 124 128 HOH HOH B . H 7 HOH 25 125 132 HOH HOH B . H 7 HOH 26 126 141 HOH HOH B . H 7 HOH 27 127 142 HOH HOH B . H 7 HOH 28 128 145 HOH HOH B . H 7 HOH 29 129 149 HOH HOH B . H 7 HOH 30 130 152 HOH HOH B . H 7 HOH 31 131 153 HOH HOH B . H 7 HOH 32 132 175 HOH HOH B . H 7 HOH 33 133 203 HOH HOH B . H 7 HOH 34 134 211 HOH HOH B . H 7 HOH 35 135 212 HOH HOH B . H 7 HOH 36 136 216 HOH HOH B . H 7 HOH 37 137 233 HOH HOH B . H 7 HOH 38 138 233 HOH HOH B . H 7 HOH 39 139 246 HOH HOH B . H 7 HOH 40 140 258 HOH HOH B . H 7 HOH 41 141 259 HOH HOH B . H 7 HOH 42 142 277 HOH HOH B . H 7 HOH 43 143 292 HOH HOH B . H 7 HOH 44 144 294 HOH HOH B . H 7 HOH 45 145 316 HOH HOH B . H 7 HOH 46 146 328 HOH HOH B . H 7 HOH 47 147 332 HOH HOH B . H 7 HOH 48 148 340 HOH HOH B . H 7 HOH 49 149 341 HOH HOH B . H 7 HOH 50 150 354 HOH HOH B . H 7 HOH 51 151 362 HOH HOH B . I 7 HOH 1 101 26 HOH HOH C . I 7 HOH 2 102 35 HOH HOH C . I 7 HOH 3 103 68 HOH HOH C . I 7 HOH 4 104 85 HOH HOH C . I 7 HOH 5 105 121 HOH HOH C . I 7 HOH 6 106 124 HOH HOH C . I 7 HOH 7 107 130 HOH HOH C . I 7 HOH 8 108 135 HOH HOH C . I 7 HOH 9 109 143 HOH HOH C . I 7 HOH 10 110 147 HOH HOH C . I 7 HOH 11 111 151 HOH HOH C . I 7 HOH 12 112 157 HOH HOH C . I 7 HOH 13 113 158 HOH HOH C . I 7 HOH 14 114 166 HOH HOH C . I 7 HOH 15 115 168 HOH HOH C . I 7 HOH 16 116 184 HOH HOH C . I 7 HOH 17 117 191 HOH HOH C . I 7 HOH 18 118 192 HOH HOH C . I 7 HOH 19 119 202 HOH HOH C . I 7 HOH 20 120 208 HOH HOH C . I 7 HOH 21 121 213 HOH HOH C . I 7 HOH 22 122 217 HOH HOH C . I 7 HOH 23 123 222 HOH HOH C . I 7 HOH 24 124 244 HOH HOH C . I 7 HOH 25 125 246 HOH HOH C . I 7 HOH 26 126 284 HOH HOH C . I 7 HOH 27 127 308 HOH HOH C . I 7 HOH 28 128 310 HOH HOH C . I 7 HOH 29 129 312 HOH HOH C . I 7 HOH 30 130 314 HOH HOH C . I 7 HOH 31 131 319 HOH HOH C . I 7 HOH 32 132 324 HOH HOH C . I 7 HOH 33 133 327 HOH HOH C . I 7 HOH 34 134 347 HOH HOH C . I 7 HOH 35 135 363 HOH HOH C . I 7 HOH 36 136 364 HOH HOH C . I 7 HOH 37 137 375 HOH HOH C . I 7 HOH 38 138 376 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DT 8 ? N1 ? C DT 8 N1 2 1 Y 1 C DT 8 ? C2 ? C DT 8 C2 3 1 Y 1 C DT 8 ? O2 ? C DT 8 O2 4 1 Y 1 C DT 8 ? N3 ? C DT 8 N3 5 1 Y 1 C DT 8 ? C4 ? C DT 8 C4 6 1 Y 1 C DT 8 ? O4 ? C DT 8 O4 7 1 Y 1 C DT 8 ? C5 ? C DT 8 C5 8 1 Y 1 C DT 8 ? C7 ? C DT 8 C7 9 1 Y 1 C DT 8 ? C6 ? C DT 8 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.4.0073 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3O1R _cell.length_a 41.465 _cell.length_b 75.830 _cell.length_c 51.976 _cell.angle_alpha 90.00 _cell.angle_beta 108.24 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O1R _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 3O1R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;20% (w/v) PEG 8K, 100 mM Sodium Chloride, 25 mM magnesium chloride, 0.1M cacodylate, pH 6.5,, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9266 # _reflns.entry_id 3O1R _reflns.observed_criterion_sigma_I 2.1 _reflns.observed_criterion_sigma_F 2.1 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.77 _reflns.number_obs 29820 _reflns.number_all 29850 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.618 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.618 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2948 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3O1R _refine.ls_number_reflns_obs 28207 _refine.ls_number_reflns_all 28292 _refine.pdbx_ls_sigma_I 2.1 _refine.pdbx_ls_sigma_F 2.1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 99.71 _refine.ls_R_factor_obs 0.16502 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16217 _refine.ls_R_factor_R_free 0.21996 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1511 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 15.627 _refine.aniso_B[1][1] -1.44 _refine.aniso_B[2][2] -1.24 _refine.aniso_B[3][3] 2.68 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.01 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 3BIE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 5.025 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1580 _refine_hist.pdbx_number_atoms_nucleic_acid 501 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 359 _refine_hist.number_atoms_total 2457 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 2290 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.636 2.262 ? 3221 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.168 5.000 ? 210 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.581 22.987 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.724 15.000 ? 261 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.017 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.109 0.200 ? 343 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1607 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.764 1.500 ? 1037 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.403 2.000 ? 1671 'X-RAY DIFFRACTION' ? r_scbond_it 2.180 3.000 ? 1253 'X-RAY DIFFRACTION' ? r_scangle_it 3.204 4.500 ? 1549 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.770 _refine_ls_shell.d_res_low 1.816 _refine_ls_shell.number_reflns_R_work 2064 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 99.40 _refine_ls_shell.R_factor_R_free 0.312 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 100 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3O1R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3O1R _struct.title 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O1R _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Demethylase, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ALKB_ECOLI 1 ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; 12 P05050 ? 2 PDB 3O1R 2 'AGGTAAXA(2YR)CGT' 1 3O1R ? 3 PDB 3O1R 3 AACGGTATTACCT 1 3O1R ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O1R A 2 ? 206 ? P05050 12 ? 216 ? 12 216 2 2 3O1R B 1 ? 12 ? 3O1R 2 ? 13 ? 2 13 3 3 3O1R C 1 ? 13 ? 3O1R 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O1R MET A 1 ? UNP P05050 ? ? 'expression tag' 11 1 1 3O1R CYS A 119 ? UNP P05050 SER 129 'engineered mutation' 129 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4170 ? 1 MORE -15 ? 1 'SSA (A^2)' 12380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 19 ? SER A 34 ? ALA A 29 SER A 44 1 ? 16 HELX_P HELX_P2 2 PRO A 83 ? ALA A 97 ? PRO A 93 ALA A 107 1 ? 15 HELX_P HELX_P3 3 GLY A 169 ? ARG A 173 ? GLY A 179 ARG A 183 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 119 SG ? ? ? 1_555 B 2YR 9 S ? ? A CYS 129 B 2YR 10 1_555 ? ? ? ? ? ? ? 2.072 ? ? covale2 covale one ? B DA 6 "O3'" ? ? ? 1_555 B MDK 7 P ? ? B DA 7 B MDK 8 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale3 covale one ? B MDK 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B MDK 8 B DA 9 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale4 covale both ? B DA 8 "O3'" ? ? ? 1_555 B 2YR 9 P ? ? B DA 9 B 2YR 10 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale5 covale both ? B 2YR 9 "O3'" ? ? ? 1_555 B DC 10 P ? ? B 2YR 10 B DC 11 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A HIS 121 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 131 A MN 301 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc2 metalc ? ? A ASP 123 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 133 A MN 301 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc3 metalc ? ? A HIS 177 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 187 A MN 301 1_555 ? ? ? ? ? ? ? 2.139 ? ? metalc4 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O2 ? ? A MN 301 A AKG 302 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O5 ? ? A MN 301 A AKG 302 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc6 metalc ? ? D MN . MN ? ? ? 1_555 G HOH . O ? ? A MN 301 A HOH 410 1_555 ? ? ? ? ? ? ? 2.353 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 N3 A ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 O4 A ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 5 N1 A ? ? 1_555 C DT 9 N3 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N6 A ? ? 1_555 C DT 9 O4 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 100.1 ? 2 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 94.7 ? 3 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 92.0 ? 4 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O2 ? E AKG . ? A AKG 302 ? 1_555 94.3 ? 5 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O2 ? E AKG . ? A AKG 302 ? 1_555 103.3 ? 6 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O2 ? E AKG . ? A AKG 302 ? 1_555 160.6 ? 7 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 95.4 ? 8 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 163.9 ? 9 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 82.4 ? 10 O2 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O5 ? E AKG . ? A AKG 302 ? 1_555 79.6 ? 11 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 173.4 ? 12 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 84.0 ? 13 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 90.4 ? 14 O2 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 79.5 ? 15 O5 ? E AKG . ? A AKG 302 ? 1_555 MN ? D MN . ? A MN 301 ? 1_555 O ? G HOH . ? A HOH 410 ? 1_555 81.0 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id 2YR _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 9 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 119 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id 2YR _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 10 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 129 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom S _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id 2YR _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? LEU A 12 ? VAL A 20 LEU A 22 A 2 VAL A 165 ? TRP A 168 ? VAL A 175 TRP A 178 A 3 ILE A 133 ? GLY A 139 ? ILE A 143 GLY A 149 A 4 ARG A 194 ? ARG A 200 ? ARG A 204 ARG A 210 A 5 ALA A 106 ? TYR A 112 ? ALA A 116 TYR A 122 A 6 ALA A 50 ? CYS A 54 ? ALA A 60 CYS A 64 B 1 GLY A 58 ? HIS A 62 ? GLY A 68 HIS A 72 B 2 GLY A 65 ? SER A 69 ? GLY A 75 SER A 79 C 1 LEU A 118 ? HIS A 121 ? LEU A 128 HIS A 131 C 2 HIS A 177 ? ILE A 179 ? HIS A 187 ILE A 189 C 3 ALA A 142 ? PHE A 146 ? ALA A 152 PHE A 156 C 4 LYS A 156 ? LEU A 160 ? LYS A 166 LEU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 12 ? N LEU A 22 O VAL A 165 ? O VAL A 175 A 2 3 O VAL A 166 ? O VAL A 176 N SER A 135 ? N SER A 145 A 3 4 N LEU A 138 ? N LEU A 148 O TYR A 195 ? O TYR A 205 A 4 5 O ARG A 194 ? O ARG A 204 N TYR A 112 ? N TYR A 122 A 5 6 O ILE A 109 ? O ILE A 119 N THR A 52 ? N THR A 62 B 1 2 N THR A 60 ? N THR A 70 O LEU A 67 ? O LEU A 77 C 1 2 N LEU A 118 ? N LEU A 128 O ILE A 179 ? O ILE A 189 C 2 3 O GLY A 178 ? O GLY A 188 N GLN A 145 ? N GLN A 155 C 3 4 N ALA A 142 ? N ALA A 152 O LEU A 160 ? O LEU A 170 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 301 ? 5 'BINDING SITE FOR RESIDUE MN A 301' AC2 Software A AKG 302 ? 16 'BINDING SITE FOR RESIDUE AKG A 302' AC3 Software A GOL 303 ? 5 'BINDING SITE FOR RESIDUE GOL A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 121 ? HIS A 131 . ? 1_555 ? 2 AC1 5 ASP A 123 ? ASP A 133 . ? 1_555 ? 3 AC1 5 HIS A 177 ? HIS A 187 . ? 1_555 ? 4 AC1 5 AKG E . ? AKG A 302 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 410 . ? 1_555 ? 6 AC2 16 ASN A 110 ? ASN A 120 . ? 1_555 ? 7 AC2 16 TYR A 112 ? TYR A 122 . ? 1_555 ? 8 AC2 16 LEU A 118 ? LEU A 128 . ? 1_555 ? 9 AC2 16 HIS A 121 ? HIS A 131 . ? 1_555 ? 10 AC2 16 ASP A 123 ? ASP A 133 . ? 1_555 ? 11 AC2 16 HIS A 177 ? HIS A 187 . ? 1_555 ? 12 AC2 16 ILE A 179 ? ILE A 189 . ? 1_555 ? 13 AC2 16 ARG A 194 ? ARG A 204 . ? 1_555 ? 14 AC2 16 ASN A 196 ? ASN A 206 . ? 1_555 ? 15 AC2 16 ARG A 200 ? ARG A 210 . ? 1_555 ? 16 AC2 16 MN D . ? MN A 301 . ? 1_555 ? 17 AC2 16 HOH G . ? HOH A 410 . ? 1_555 ? 18 AC2 16 HOH G . ? HOH A 446 . ? 1_555 ? 19 AC2 16 HOH G . ? HOH A 461 . ? 1_555 ? 20 AC2 16 HOH G . ? HOH A 550 . ? 1_555 ? 21 AC2 16 MDK B 7 ? MDK B 8 . ? 1_555 ? 22 AC3 5 ASN A 28 ? ASN A 38 . ? 1_555 ? 23 AC3 5 THR A 190 ? THR A 200 . ? 1_555 ? 24 AC3 5 TYR A 195 ? TYR A 205 . ? 1_555 ? 25 AC3 5 HOH G . ? HOH A 630 . ? 1_555 ? 26 AC3 5 HOH G . ? HOH A 641 . ? 1_555 ? # _pdbx_entry_details.entry_id 3O1R _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 406 ? ? O A HOH 499 ? ? 2.12 2 1 O A HOH 527 ? ? O A HOH 537 ? ? 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 116.19 108.30 7.89 0.30 N 2 1 "C3'" B DT 5 ? A "C2'" B DT 5 ? A "C1'" B DT 5 ? A 96.63 102.40 -5.77 0.80 N 3 1 "O4'" B DT 5 ? A "C1'" B DT 5 ? A N1 B DT 5 ? A 111.41 108.30 3.11 0.30 N 4 1 "O4'" B DA 6 ? A "C1'" B DA 6 ? A N9 B DA 6 ? A 112.90 108.30 4.60 0.30 N 5 1 "O4'" C DA 1 ? ? "C1'" C DA 1 ? ? N9 C DA 1 ? ? 111.62 108.30 3.32 0.30 N 6 1 "O4'" C DG 4 ? ? "C1'" C DG 4 ? ? N9 C DG 4 ? ? 112.21 108.30 3.91 0.30 N 7 1 "O4'" C DT 6 ? ? "C1'" C DT 6 ? ? N1 C DT 6 ? ? 112.19 108.30 3.89 0.30 N 8 1 C5 C DT 6 ? ? C4 C DT 6 ? ? O4 C DT 6 ? ? 120.44 124.90 -4.46 0.70 N 9 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? N1 C DC 11 ? ? 111.56 108.30 3.26 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 24 ? ? 59.83 19.01 2 1 ILE A 201 ? ? 65.14 -68.73 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -1.8120 1.6740 25.5830 -0.0086 -0.0233 -0.0205 0.0003 -0.0021 0.0176 1.0138 1.3297 0.3406 -0.0218 -0.1708 0.2811 -0.0111 -0.0041 0.0784 -0.0675 0.0161 0.0230 0.0062 0.0190 -0.0050 'X-RAY DIFFRACTION' 2 ? refined -10.7540 -9.1720 2.1660 -0.0288 0.0610 -0.0929 0.0763 -0.0331 0.0318 8.2301 5.2618 15.0807 -2.3144 7.7296 -0.1444 0.2581 0.7419 -0.1027 -0.1135 -0.0810 0.6021 -0.5343 0.4807 -0.1771 'X-RAY DIFFRACTION' 3 ? refined 5.0180 -16.7710 14.2960 0.0109 -0.0019 0.0072 0.0187 0.0011 0.0017 2.6058 1.7677 0.6795 -0.9979 -0.6285 1.0959 0.0830 0.1848 -0.2661 -0.0436 -0.0693 0.0073 -0.0755 0.0209 -0.0137 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 13 ? ? A 214 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 2 ? ? B 6 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 C 9 ? ? C 13 ? ? ? ? 'X-RAY DIFFRACTION' 4 3 B 7 ? ? B 13 ? ? ? ? 'X-RAY DIFFRACTION' 5 3 C 1 ? ? C 8 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 11 ? A MET 1 2 1 Y 1 A GLN 12 ? A GLN 2 3 1 Y 1 A LYS 215 ? A LYS 205 4 1 Y 1 A GLU 216 ? A GLU 206 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YR P P N N 1 2YR OP1 O N N 2 2YR OP2 O N N 3 2YR "O5'" O N N 4 2YR "C5'" C N N 5 2YR "C4'" C N R 6 2YR "O4'" O N N 7 2YR "C3'" C N S 8 2YR "O3'" O N N 9 2YR "C2'" C N N 10 2YR "C1'" C N R 11 2YR N1 N N N 12 2YR C2 C N N 13 2YR O2 O N N 14 2YR N3 N N N 15 2YR C4 C N N 16 2YR N4 N N N 17 2YR C5 C N N 18 2YR C6 C N N 19 2YR S S N N 20 2YR C8 C N N 21 2YR C9 C N N 22 2YR H2 H N N 23 2YR H3 H N N 24 2YR H4 H N N 25 2YR H5 H N N 26 2YR H6 H N N 27 2YR H7 H N N 28 2YR H8 H N N 29 2YR H9 H N N 30 2YR H10 H N N 31 2YR H11 H N N 32 2YR H12 H N N 33 2YR H13 H N N 34 2YR H14 H N N 35 2YR H15 H N N 36 2YR H16 H N N 37 2YR H17 H N N 38 2YR H18 H N N 39 2YR OP3 O N N 40 2YR H20 H N N 41 AKG C1 C N N 42 AKG O1 O N N 43 AKG O2 O N N 44 AKG C2 C N N 45 AKG O5 O N N 46 AKG C3 C N N 47 AKG C4 C N N 48 AKG C5 C N N 49 AKG O3 O N N 50 AKG O4 O N N 51 AKG HO2 H N N 52 AKG H31 H N N 53 AKG H32 H N N 54 AKG H41 H N N 55 AKG H42 H N N 56 AKG HO4 H N N 57 ALA N N N N 58 ALA CA C N S 59 ALA C C N N 60 ALA O O N N 61 ALA CB C N N 62 ALA OXT O N N 63 ALA H H N N 64 ALA H2 H N N 65 ALA HA H N N 66 ALA HB1 H N N 67 ALA HB2 H N N 68 ALA HB3 H N N 69 ALA HXT H N N 70 ARG N N N N 71 ARG CA C N S 72 ARG C C N N 73 ARG O O N N 74 ARG CB C N N 75 ARG CG C N N 76 ARG CD C N N 77 ARG NE N N N 78 ARG CZ C N N 79 ARG NH1 N N N 80 ARG NH2 N N N 81 ARG OXT O N N 82 ARG H H N N 83 ARG H2 H N N 84 ARG HA H N N 85 ARG HB2 H N N 86 ARG HB3 H N N 87 ARG HG2 H N N 88 ARG HG3 H N N 89 ARG HD2 H N N 90 ARG HD3 H N N 91 ARG HE H N N 92 ARG HH11 H N N 93 ARG HH12 H N N 94 ARG HH21 H N N 95 ARG HH22 H N N 96 ARG HXT H N N 97 ASN N N N N 98 ASN CA C N S 99 ASN C C N N 100 ASN O O N N 101 ASN CB C N N 102 ASN CG C N N 103 ASN OD1 O N N 104 ASN ND2 N N N 105 ASN OXT O N N 106 ASN H H N N 107 ASN H2 H N N 108 ASN HA H N N 109 ASN HB2 H N N 110 ASN HB3 H N N 111 ASN HD21 H N N 112 ASN HD22 H N N 113 ASN HXT H N N 114 ASP N N N N 115 ASP CA C N S 116 ASP C C N N 117 ASP O O N N 118 ASP CB C N N 119 ASP CG C N N 120 ASP OD1 O N N 121 ASP OD2 O N N 122 ASP OXT O N N 123 ASP H H N N 124 ASP H2 H N N 125 ASP HA H N N 126 ASP HB2 H N N 127 ASP HB3 H N N 128 ASP HD2 H N N 129 ASP HXT H N N 130 CYS N N N N 131 CYS CA C N R 132 CYS C C N N 133 CYS O O N N 134 CYS CB C N N 135 CYS SG S N N 136 CYS OXT O N N 137 CYS H H N N 138 CYS H2 H N N 139 CYS HA H N N 140 CYS HB2 H N N 141 CYS HB3 H N N 142 CYS HG H N N 143 CYS HXT H N N 144 DA OP3 O N N 145 DA P P N N 146 DA OP1 O N N 147 DA OP2 O N N 148 DA "O5'" O N N 149 DA "C5'" C N N 150 DA "C4'" C N R 151 DA "O4'" O N N 152 DA "C3'" C N S 153 DA "O3'" O N N 154 DA "C2'" C N N 155 DA "C1'" C N R 156 DA N9 N Y N 157 DA C8 C Y N 158 DA N7 N Y N 159 DA C5 C Y N 160 DA C6 C Y N 161 DA N6 N N N 162 DA N1 N Y N 163 DA C2 C Y N 164 DA N3 N Y N 165 DA C4 C Y N 166 DA HOP3 H N N 167 DA HOP2 H N N 168 DA "H5'" H N N 169 DA "H5''" H N N 170 DA "H4'" H N N 171 DA "H3'" H N N 172 DA "HO3'" H N N 173 DA "H2'" H N N 174 DA "H2''" H N N 175 DA "H1'" H N N 176 DA H8 H N N 177 DA H61 H N N 178 DA H62 H N N 179 DA H2 H N N 180 DC OP3 O N N 181 DC P P N N 182 DC OP1 O N N 183 DC OP2 O N N 184 DC "O5'" O N N 185 DC "C5'" C N N 186 DC "C4'" C N R 187 DC "O4'" O N N 188 DC "C3'" C N S 189 DC "O3'" O N N 190 DC "C2'" C N N 191 DC "C1'" C N R 192 DC N1 N N N 193 DC C2 C N N 194 DC O2 O N N 195 DC N3 N N N 196 DC C4 C N N 197 DC N4 N N N 198 DC C5 C N N 199 DC C6 C N N 200 DC HOP3 H N N 201 DC HOP2 H N N 202 DC "H5'" H N N 203 DC "H5''" H N N 204 DC "H4'" H N N 205 DC "H3'" H N N 206 DC "HO3'" H N N 207 DC "H2'" H N N 208 DC "H2''" H N N 209 DC "H1'" H N N 210 DC H41 H N N 211 DC H42 H N N 212 DC H5 H N N 213 DC H6 H N N 214 DG OP3 O N N 215 DG P P N N 216 DG OP1 O N N 217 DG OP2 O N N 218 DG "O5'" O N N 219 DG "C5'" C N N 220 DG "C4'" C N R 221 DG "O4'" O N N 222 DG "C3'" C N S 223 DG "O3'" O N N 224 DG "C2'" C N N 225 DG "C1'" C N R 226 DG N9 N Y N 227 DG C8 C Y N 228 DG N7 N Y N 229 DG C5 C Y N 230 DG C6 C N N 231 DG O6 O N N 232 DG N1 N N N 233 DG C2 C N N 234 DG N2 N N N 235 DG N3 N N N 236 DG C4 C Y N 237 DG HOP3 H N N 238 DG HOP2 H N N 239 DG "H5'" H N N 240 DG "H5''" H N N 241 DG "H4'" H N N 242 DG "H3'" H N N 243 DG "HO3'" H N N 244 DG "H2'" H N N 245 DG "H2''" H N N 246 DG "H1'" H N N 247 DG H8 H N N 248 DG H1 H N N 249 DG H21 H N N 250 DG H22 H N N 251 DT OP3 O N N 252 DT P P N N 253 DT OP1 O N N 254 DT OP2 O N N 255 DT "O5'" O N N 256 DT "C5'" C N N 257 DT "C4'" C N R 258 DT "O4'" O N N 259 DT "C3'" C N S 260 DT "O3'" O N N 261 DT "C2'" C N N 262 DT "C1'" C N R 263 DT N1 N N N 264 DT C2 C N N 265 DT O2 O N N 266 DT N3 N N N 267 DT C4 C N N 268 DT O4 O N N 269 DT C5 C N N 270 DT C7 C N N 271 DT C6 C N N 272 DT HOP3 H N N 273 DT HOP2 H N N 274 DT "H5'" H N N 275 DT "H5''" H N N 276 DT "H4'" H N N 277 DT "H3'" H N N 278 DT "HO3'" H N N 279 DT "H2'" H N N 280 DT "H2''" H N N 281 DT "H1'" H N N 282 DT H3 H N N 283 DT H71 H N N 284 DT H72 H N N 285 DT H73 H N N 286 DT H6 H N N 287 GLN N N N N 288 GLN CA C N S 289 GLN C C N N 290 GLN O O N N 291 GLN CB C N N 292 GLN CG C N N 293 GLN CD C N N 294 GLN OE1 O N N 295 GLN NE2 N N N 296 GLN OXT O N N 297 GLN H H N N 298 GLN H2 H N N 299 GLN HA H N N 300 GLN HB2 H N N 301 GLN HB3 H N N 302 GLN HG2 H N N 303 GLN HG3 H N N 304 GLN HE21 H N N 305 GLN HE22 H N N 306 GLN HXT H N N 307 GLU N N N N 308 GLU CA C N S 309 GLU C C N N 310 GLU O O N N 311 GLU CB C N N 312 GLU CG C N N 313 GLU CD C N N 314 GLU OE1 O N N 315 GLU OE2 O N N 316 GLU OXT O N N 317 GLU H H N N 318 GLU H2 H N N 319 GLU HA H N N 320 GLU HB2 H N N 321 GLU HB3 H N N 322 GLU HG2 H N N 323 GLU HG3 H N N 324 GLU HE2 H N N 325 GLU HXT H N N 326 GLY N N N N 327 GLY CA C N N 328 GLY C C N N 329 GLY O O N N 330 GLY OXT O N N 331 GLY H H N N 332 GLY H2 H N N 333 GLY HA2 H N N 334 GLY HA3 H N N 335 GLY HXT H N N 336 GOL C1 C N N 337 GOL O1 O N N 338 GOL C2 C N N 339 GOL O2 O N N 340 GOL C3 C N N 341 GOL O3 O N N 342 GOL H11 H N N 343 GOL H12 H N N 344 GOL HO1 H N N 345 GOL H2 H N N 346 GOL HO2 H N N 347 GOL H31 H N N 348 GOL H32 H N N 349 GOL HO3 H N N 350 HIS N N N N 351 HIS CA C N S 352 HIS C C N N 353 HIS O O N N 354 HIS CB C N N 355 HIS CG C Y N 356 HIS ND1 N Y N 357 HIS CD2 C Y N 358 HIS CE1 C Y N 359 HIS NE2 N Y N 360 HIS OXT O N N 361 HIS H H N N 362 HIS H2 H N N 363 HIS HA H N N 364 HIS HB2 H N N 365 HIS HB3 H N N 366 HIS HD1 H N N 367 HIS HD2 H N N 368 HIS HE1 H N N 369 HIS HE2 H N N 370 HIS HXT H N N 371 HOH O O N N 372 HOH H1 H N N 373 HOH H2 H N N 374 ILE N N N N 375 ILE CA C N S 376 ILE C C N N 377 ILE O O N N 378 ILE CB C N S 379 ILE CG1 C N N 380 ILE CG2 C N N 381 ILE CD1 C N N 382 ILE OXT O N N 383 ILE H H N N 384 ILE H2 H N N 385 ILE HA H N N 386 ILE HB H N N 387 ILE HG12 H N N 388 ILE HG13 H N N 389 ILE HG21 H N N 390 ILE HG22 H N N 391 ILE HG23 H N N 392 ILE HD11 H N N 393 ILE HD12 H N N 394 ILE HD13 H N N 395 ILE HXT H N N 396 LEU N N N N 397 LEU CA C N S 398 LEU C C N N 399 LEU O O N N 400 LEU CB C N N 401 LEU CG C N N 402 LEU CD1 C N N 403 LEU CD2 C N N 404 LEU OXT O N N 405 LEU H H N N 406 LEU H2 H N N 407 LEU HA H N N 408 LEU HB2 H N N 409 LEU HB3 H N N 410 LEU HG H N N 411 LEU HD11 H N N 412 LEU HD12 H N N 413 LEU HD13 H N N 414 LEU HD21 H N N 415 LEU HD22 H N N 416 LEU HD23 H N N 417 LEU HXT H N N 418 LYS N N N N 419 LYS CA C N S 420 LYS C C N N 421 LYS O O N N 422 LYS CB C N N 423 LYS CG C N N 424 LYS CD C N N 425 LYS CE C N N 426 LYS NZ N N N 427 LYS OXT O N N 428 LYS H H N N 429 LYS H2 H N N 430 LYS HA H N N 431 LYS HB2 H N N 432 LYS HB3 H N N 433 LYS HG2 H N N 434 LYS HG3 H N N 435 LYS HD2 H N N 436 LYS HD3 H N N 437 LYS HE2 H N N 438 LYS HE3 H N N 439 LYS HZ1 H N N 440 LYS HZ2 H N N 441 LYS HZ3 H N N 442 LYS HXT H N N 443 MDK P P N N 444 MDK N1 N N N 445 MDK C2 C N N 446 MDK O2 O N N 447 MDK C3 C N N 448 MDK C4 C N N 449 MDK N4 N N N 450 MDK C5 C N N 451 MDK C6 C N N 452 MDK "C1'" C N R 453 MDK O1P O N N 454 MDK "C2'" C N N 455 MDK C21 C N N 456 MDK O2P O N N 457 MDK "C3'" C N S 458 MDK "O3'" O N N 459 MDK "C4'" C N R 460 MDK "O4'" O N N 461 MDK "C5'" C N N 462 MDK "O5'" O N N 463 MDK HN4 H N N 464 MDK HN4A H N N 465 MDK H5 H N N 466 MDK H6 H N N 467 MDK "H1'" H N N 468 MDK "H2'" H N N 469 MDK "H2'A" H N N 470 MDK H21 H N N 471 MDK H21A H N N 472 MDK H21B H N N 473 MDK "H3'" H N N 474 MDK "HO3'" H N N 475 MDK "H4'" H N N 476 MDK "H5'" H N N 477 MDK "H5'A" H N N 478 MDK O7 O N N 479 MDK H16 H N N 480 MDK H17 H N N 481 MET N N N N 482 MET CA C N S 483 MET C C N N 484 MET O O N N 485 MET CB C N N 486 MET CG C N N 487 MET SD S N N 488 MET CE C N N 489 MET OXT O N N 490 MET H H N N 491 MET H2 H N N 492 MET HA H N N 493 MET HB2 H N N 494 MET HB3 H N N 495 MET HG2 H N N 496 MET HG3 H N N 497 MET HE1 H N N 498 MET HE2 H N N 499 MET HE3 H N N 500 MET HXT H N N 501 MN MN MN N N 502 PHE N N N N 503 PHE CA C N S 504 PHE C C N N 505 PHE O O N N 506 PHE CB C N N 507 PHE CG C Y N 508 PHE CD1 C Y N 509 PHE CD2 C Y N 510 PHE CE1 C Y N 511 PHE CE2 C Y N 512 PHE CZ C Y N 513 PHE OXT O N N 514 PHE H H N N 515 PHE H2 H N N 516 PHE HA H N N 517 PHE HB2 H N N 518 PHE HB3 H N N 519 PHE HD1 H N N 520 PHE HD2 H N N 521 PHE HE1 H N N 522 PHE HE2 H N N 523 PHE HZ H N N 524 PHE HXT H N N 525 PRO N N N N 526 PRO CA C N S 527 PRO C C N N 528 PRO O O N N 529 PRO CB C N N 530 PRO CG C N N 531 PRO CD C N N 532 PRO OXT O N N 533 PRO H H N N 534 PRO HA H N N 535 PRO HB2 H N N 536 PRO HB3 H N N 537 PRO HG2 H N N 538 PRO HG3 H N N 539 PRO HD2 H N N 540 PRO HD3 H N N 541 PRO HXT H N N 542 SER N N N N 543 SER CA C N S 544 SER C C N N 545 SER O O N N 546 SER CB C N N 547 SER OG O N N 548 SER OXT O N N 549 SER H H N N 550 SER H2 H N N 551 SER HA H N N 552 SER HB2 H N N 553 SER HB3 H N N 554 SER HG H N N 555 SER HXT H N N 556 THR N N N N 557 THR CA C N S 558 THR C C N N 559 THR O O N N 560 THR CB C N R 561 THR OG1 O N N 562 THR CG2 C N N 563 THR OXT O N N 564 THR H H N N 565 THR H2 H N N 566 THR HA H N N 567 THR HB H N N 568 THR HG1 H N N 569 THR HG21 H N N 570 THR HG22 H N N 571 THR HG23 H N N 572 THR HXT H N N 573 TRP N N N N 574 TRP CA C N S 575 TRP C C N N 576 TRP O O N N 577 TRP CB C N N 578 TRP CG C Y N 579 TRP CD1 C Y N 580 TRP CD2 C Y N 581 TRP NE1 N Y N 582 TRP CE2 C Y N 583 TRP CE3 C Y N 584 TRP CZ2 C Y N 585 TRP CZ3 C Y N 586 TRP CH2 C Y N 587 TRP OXT O N N 588 TRP H H N N 589 TRP H2 H N N 590 TRP HA H N N 591 TRP HB2 H N N 592 TRP HB3 H N N 593 TRP HD1 H N N 594 TRP HE1 H N N 595 TRP HE3 H N N 596 TRP HZ2 H N N 597 TRP HZ3 H N N 598 TRP HH2 H N N 599 TRP HXT H N N 600 TYR N N N N 601 TYR CA C N S 602 TYR C C N N 603 TYR O O N N 604 TYR CB C N N 605 TYR CG C Y N 606 TYR CD1 C Y N 607 TYR CD2 C Y N 608 TYR CE1 C Y N 609 TYR CE2 C Y N 610 TYR CZ C Y N 611 TYR OH O N N 612 TYR OXT O N N 613 TYR H H N N 614 TYR H2 H N N 615 TYR HA H N N 616 TYR HB2 H N N 617 TYR HB3 H N N 618 TYR HD1 H N N 619 TYR HD2 H N N 620 TYR HE1 H N N 621 TYR HE2 H N N 622 TYR HH H N N 623 TYR HXT H N N 624 VAL N N N N 625 VAL CA C N S 626 VAL C C N N 627 VAL O O N N 628 VAL CB C N N 629 VAL CG1 C N N 630 VAL CG2 C N N 631 VAL OXT O N N 632 VAL H H N N 633 VAL H2 H N N 634 VAL HA H N N 635 VAL HB H N N 636 VAL HG11 H N N 637 VAL HG12 H N N 638 VAL HG13 H N N 639 VAL HG21 H N N 640 VAL HG22 H N N 641 VAL HG23 H N N 642 VAL HXT H N N 643 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YR S C8 sing N N 1 2YR C8 C9 sing N N 2 2YR N4 C9 sing N N 3 2YR N4 C4 sing N N 4 2YR C4 N3 doub N N 5 2YR C4 C5 sing N N 6 2YR N3 C2 sing N N 7 2YR C5 C6 doub N N 8 2YR C2 O2 doub N N 9 2YR C2 N1 sing N N 10 2YR C6 N1 sing N N 11 2YR N1 "C1'" sing N N 12 2YR "C2'" "C3'" sing N N 13 2YR "C2'" "C1'" sing N N 14 2YR "C3'" "O3'" sing N N 15 2YR "C3'" "C4'" sing N N 16 2YR "C1'" "O4'" sing N N 17 2YR "O4'" "C4'" sing N N 18 2YR "C4'" "C5'" sing N N 19 2YR "C5'" "O5'" sing N N 20 2YR "O5'" P sing N N 21 2YR OP2 P sing N N 22 2YR P OP1 doub N N 23 2YR OP2 H2 sing N N 24 2YR "C5'" H3 sing N N 25 2YR "C5'" H4 sing N N 26 2YR "C4'" H5 sing N N 27 2YR "C3'" H6 sing N N 28 2YR "O3'" H7 sing N N 29 2YR "C2'" H8 sing N N 30 2YR "C2'" H9 sing N N 31 2YR "C1'" H10 sing N N 32 2YR N4 H11 sing N N 33 2YR C5 H12 sing N N 34 2YR C6 H13 sing N N 35 2YR S H14 sing N N 36 2YR C8 H15 sing N N 37 2YR C8 H16 sing N N 38 2YR C9 H17 sing N N 39 2YR C9 H18 sing N N 40 2YR P OP3 sing N N 41 2YR OP3 H20 sing N N 42 AKG C1 O1 doub N N 43 AKG C1 O2 sing N N 44 AKG C1 C2 sing N N 45 AKG O2 HO2 sing N N 46 AKG C2 O5 doub N N 47 AKG C2 C3 sing N N 48 AKG C3 C4 sing N N 49 AKG C3 H31 sing N N 50 AKG C3 H32 sing N N 51 AKG C4 C5 sing N N 52 AKG C4 H41 sing N N 53 AKG C4 H42 sing N N 54 AKG C5 O3 doub N N 55 AKG C5 O4 sing N N 56 AKG O4 HO4 sing N N 57 ALA N CA sing N N 58 ALA N H sing N N 59 ALA N H2 sing N N 60 ALA CA C sing N N 61 ALA CA CB sing N N 62 ALA CA HA sing N N 63 ALA C O doub N N 64 ALA C OXT sing N N 65 ALA CB HB1 sing N N 66 ALA CB HB2 sing N N 67 ALA CB HB3 sing N N 68 ALA OXT HXT sing N N 69 ARG N CA sing N N 70 ARG N H sing N N 71 ARG N H2 sing N N 72 ARG CA C sing N N 73 ARG CA CB sing N N 74 ARG CA HA sing N N 75 ARG C O doub N N 76 ARG C OXT sing N N 77 ARG CB CG sing N N 78 ARG CB HB2 sing N N 79 ARG CB HB3 sing N N 80 ARG CG CD sing N N 81 ARG CG HG2 sing N N 82 ARG CG HG3 sing N N 83 ARG CD NE sing N N 84 ARG CD HD2 sing N N 85 ARG CD HD3 sing N N 86 ARG NE CZ sing N N 87 ARG NE HE sing N N 88 ARG CZ NH1 sing N N 89 ARG CZ NH2 doub N N 90 ARG NH1 HH11 sing N N 91 ARG NH1 HH12 sing N N 92 ARG NH2 HH21 sing N N 93 ARG NH2 HH22 sing N N 94 ARG OXT HXT sing N N 95 ASN N CA sing N N 96 ASN N H sing N N 97 ASN N H2 sing N N 98 ASN CA C sing N N 99 ASN CA CB sing N N 100 ASN CA HA sing N N 101 ASN C O doub N N 102 ASN C OXT sing N N 103 ASN CB CG sing N N 104 ASN CB HB2 sing N N 105 ASN CB HB3 sing N N 106 ASN CG OD1 doub N N 107 ASN CG ND2 sing N N 108 ASN ND2 HD21 sing N N 109 ASN ND2 HD22 sing N N 110 ASN OXT HXT sing N N 111 ASP N CA sing N N 112 ASP N H sing N N 113 ASP N H2 sing N N 114 ASP CA C sing N N 115 ASP CA CB sing N N 116 ASP CA HA sing N N 117 ASP C O doub N N 118 ASP C OXT sing N N 119 ASP CB CG sing N N 120 ASP CB HB2 sing N N 121 ASP CB HB3 sing N N 122 ASP CG OD1 doub N N 123 ASP CG OD2 sing N N 124 ASP OD2 HD2 sing N N 125 ASP OXT HXT sing N N 126 CYS N CA sing N N 127 CYS N H sing N N 128 CYS N H2 sing N N 129 CYS CA C sing N N 130 CYS CA CB sing N N 131 CYS CA HA sing N N 132 CYS C O doub N N 133 CYS C OXT sing N N 134 CYS CB SG sing N N 135 CYS CB HB2 sing N N 136 CYS CB HB3 sing N N 137 CYS SG HG sing N N 138 CYS OXT HXT sing N N 139 DA OP3 P sing N N 140 DA OP3 HOP3 sing N N 141 DA P OP1 doub N N 142 DA P OP2 sing N N 143 DA P "O5'" sing N N 144 DA OP2 HOP2 sing N N 145 DA "O5'" "C5'" sing N N 146 DA "C5'" "C4'" sing N N 147 DA "C5'" "H5'" sing N N 148 DA "C5'" "H5''" sing N N 149 DA "C4'" "O4'" sing N N 150 DA "C4'" "C3'" sing N N 151 DA "C4'" "H4'" sing N N 152 DA "O4'" "C1'" sing N N 153 DA "C3'" "O3'" sing N N 154 DA "C3'" "C2'" sing N N 155 DA "C3'" "H3'" sing N N 156 DA "O3'" "HO3'" sing N N 157 DA "C2'" "C1'" sing N N 158 DA "C2'" "H2'" sing N N 159 DA "C2'" "H2''" sing N N 160 DA "C1'" N9 sing N N 161 DA "C1'" "H1'" sing N N 162 DA N9 C8 sing Y N 163 DA N9 C4 sing Y N 164 DA C8 N7 doub Y N 165 DA C8 H8 sing N N 166 DA N7 C5 sing Y N 167 DA C5 C6 sing Y N 168 DA C5 C4 doub Y N 169 DA C6 N6 sing N N 170 DA C6 N1 doub Y N 171 DA N6 H61 sing N N 172 DA N6 H62 sing N N 173 DA N1 C2 sing Y N 174 DA C2 N3 doub Y N 175 DA C2 H2 sing N N 176 DA N3 C4 sing Y N 177 DC OP3 P sing N N 178 DC OP3 HOP3 sing N N 179 DC P OP1 doub N N 180 DC P OP2 sing N N 181 DC P "O5'" sing N N 182 DC OP2 HOP2 sing N N 183 DC "O5'" "C5'" sing N N 184 DC "C5'" "C4'" sing N N 185 DC "C5'" "H5'" sing N N 186 DC "C5'" "H5''" sing N N 187 DC "C4'" "O4'" sing N N 188 DC "C4'" "C3'" sing N N 189 DC "C4'" "H4'" sing N N 190 DC "O4'" "C1'" sing N N 191 DC "C3'" "O3'" sing N N 192 DC "C3'" "C2'" sing N N 193 DC "C3'" "H3'" sing N N 194 DC "O3'" "HO3'" sing N N 195 DC "C2'" "C1'" sing N N 196 DC "C2'" "H2'" sing N N 197 DC "C2'" "H2''" sing N N 198 DC "C1'" N1 sing N N 199 DC "C1'" "H1'" sing N N 200 DC N1 C2 sing N N 201 DC N1 C6 sing N N 202 DC C2 O2 doub N N 203 DC C2 N3 sing N N 204 DC N3 C4 doub N N 205 DC C4 N4 sing N N 206 DC C4 C5 sing N N 207 DC N4 H41 sing N N 208 DC N4 H42 sing N N 209 DC C5 C6 doub N N 210 DC C5 H5 sing N N 211 DC C6 H6 sing N N 212 DG OP3 P sing N N 213 DG OP3 HOP3 sing N N 214 DG P OP1 doub N N 215 DG P OP2 sing N N 216 DG P "O5'" sing N N 217 DG OP2 HOP2 sing N N 218 DG "O5'" "C5'" sing N N 219 DG "C5'" "C4'" sing N N 220 DG "C5'" "H5'" sing N N 221 DG "C5'" "H5''" sing N N 222 DG "C4'" "O4'" sing N N 223 DG "C4'" "C3'" sing N N 224 DG "C4'" "H4'" sing N N 225 DG "O4'" "C1'" sing N N 226 DG "C3'" "O3'" sing N N 227 DG "C3'" "C2'" sing N N 228 DG "C3'" "H3'" sing N N 229 DG "O3'" "HO3'" sing N N 230 DG "C2'" "C1'" sing N N 231 DG "C2'" "H2'" sing N N 232 DG "C2'" "H2''" sing N N 233 DG "C1'" N9 sing N N 234 DG "C1'" "H1'" sing N N 235 DG N9 C8 sing Y N 236 DG N9 C4 sing Y N 237 DG C8 N7 doub Y N 238 DG C8 H8 sing N N 239 DG N7 C5 sing Y N 240 DG C5 C6 sing N N 241 DG C5 C4 doub Y N 242 DG C6 O6 doub N N 243 DG C6 N1 sing N N 244 DG N1 C2 sing N N 245 DG N1 H1 sing N N 246 DG C2 N2 sing N N 247 DG C2 N3 doub N N 248 DG N2 H21 sing N N 249 DG N2 H22 sing N N 250 DG N3 C4 sing N N 251 DT OP3 P sing N N 252 DT OP3 HOP3 sing N N 253 DT P OP1 doub N N 254 DT P OP2 sing N N 255 DT P "O5'" sing N N 256 DT OP2 HOP2 sing N N 257 DT "O5'" "C5'" sing N N 258 DT "C5'" "C4'" sing N N 259 DT "C5'" "H5'" sing N N 260 DT "C5'" "H5''" sing N N 261 DT "C4'" "O4'" sing N N 262 DT "C4'" "C3'" sing N N 263 DT "C4'" "H4'" sing N N 264 DT "O4'" "C1'" sing N N 265 DT "C3'" "O3'" sing N N 266 DT "C3'" "C2'" sing N N 267 DT "C3'" "H3'" sing N N 268 DT "O3'" "HO3'" sing N N 269 DT "C2'" "C1'" sing N N 270 DT "C2'" "H2'" sing N N 271 DT "C2'" "H2''" sing N N 272 DT "C1'" N1 sing N N 273 DT "C1'" "H1'" sing N N 274 DT N1 C2 sing N N 275 DT N1 C6 sing N N 276 DT C2 O2 doub N N 277 DT C2 N3 sing N N 278 DT N3 C4 sing N N 279 DT N3 H3 sing N N 280 DT C4 O4 doub N N 281 DT C4 C5 sing N N 282 DT C5 C7 sing N N 283 DT C5 C6 doub N N 284 DT C7 H71 sing N N 285 DT C7 H72 sing N N 286 DT C7 H73 sing N N 287 DT C6 H6 sing N N 288 GLN N CA sing N N 289 GLN N H sing N N 290 GLN N H2 sing N N 291 GLN CA C sing N N 292 GLN CA CB sing N N 293 GLN CA HA sing N N 294 GLN C O doub N N 295 GLN C OXT sing N N 296 GLN CB CG sing N N 297 GLN CB HB2 sing N N 298 GLN CB HB3 sing N N 299 GLN CG CD sing N N 300 GLN CG HG2 sing N N 301 GLN CG HG3 sing N N 302 GLN CD OE1 doub N N 303 GLN CD NE2 sing N N 304 GLN NE2 HE21 sing N N 305 GLN NE2 HE22 sing N N 306 GLN OXT HXT sing N N 307 GLU N CA sing N N 308 GLU N H sing N N 309 GLU N H2 sing N N 310 GLU CA C sing N N 311 GLU CA CB sing N N 312 GLU CA HA sing N N 313 GLU C O doub N N 314 GLU C OXT sing N N 315 GLU CB CG sing N N 316 GLU CB HB2 sing N N 317 GLU CB HB3 sing N N 318 GLU CG CD sing N N 319 GLU CG HG2 sing N N 320 GLU CG HG3 sing N N 321 GLU CD OE1 doub N N 322 GLU CD OE2 sing N N 323 GLU OE2 HE2 sing N N 324 GLU OXT HXT sing N N 325 GLY N CA sing N N 326 GLY N H sing N N 327 GLY N H2 sing N N 328 GLY CA C sing N N 329 GLY CA HA2 sing N N 330 GLY CA HA3 sing N N 331 GLY C O doub N N 332 GLY C OXT sing N N 333 GLY OXT HXT sing N N 334 GOL C1 O1 sing N N 335 GOL C1 C2 sing N N 336 GOL C1 H11 sing N N 337 GOL C1 H12 sing N N 338 GOL O1 HO1 sing N N 339 GOL C2 O2 sing N N 340 GOL C2 C3 sing N N 341 GOL C2 H2 sing N N 342 GOL O2 HO2 sing N N 343 GOL C3 O3 sing N N 344 GOL C3 H31 sing N N 345 GOL C3 H32 sing N N 346 GOL O3 HO3 sing N N 347 HIS N CA sing N N 348 HIS N H sing N N 349 HIS N H2 sing N N 350 HIS CA C sing N N 351 HIS CA CB sing N N 352 HIS CA HA sing N N 353 HIS C O doub N N 354 HIS C OXT sing N N 355 HIS CB CG sing N N 356 HIS CB HB2 sing N N 357 HIS CB HB3 sing N N 358 HIS CG ND1 sing Y N 359 HIS CG CD2 doub Y N 360 HIS ND1 CE1 doub Y N 361 HIS ND1 HD1 sing N N 362 HIS CD2 NE2 sing Y N 363 HIS CD2 HD2 sing N N 364 HIS CE1 NE2 sing Y N 365 HIS CE1 HE1 sing N N 366 HIS NE2 HE2 sing N N 367 HIS OXT HXT sing N N 368 HOH O H1 sing N N 369 HOH O H2 sing N N 370 ILE N CA sing N N 371 ILE N H sing N N 372 ILE N H2 sing N N 373 ILE CA C sing N N 374 ILE CA CB sing N N 375 ILE CA HA sing N N 376 ILE C O doub N N 377 ILE C OXT sing N N 378 ILE CB CG1 sing N N 379 ILE CB CG2 sing N N 380 ILE CB HB sing N N 381 ILE CG1 CD1 sing N N 382 ILE CG1 HG12 sing N N 383 ILE CG1 HG13 sing N N 384 ILE CG2 HG21 sing N N 385 ILE CG2 HG22 sing N N 386 ILE CG2 HG23 sing N N 387 ILE CD1 HD11 sing N N 388 ILE CD1 HD12 sing N N 389 ILE CD1 HD13 sing N N 390 ILE OXT HXT sing N N 391 LEU N CA sing N N 392 LEU N H sing N N 393 LEU N H2 sing N N 394 LEU CA C sing N N 395 LEU CA CB sing N N 396 LEU CA HA sing N N 397 LEU C O doub N N 398 LEU C OXT sing N N 399 LEU CB CG sing N N 400 LEU CB HB2 sing N N 401 LEU CB HB3 sing N N 402 LEU CG CD1 sing N N 403 LEU CG CD2 sing N N 404 LEU CG HG sing N N 405 LEU CD1 HD11 sing N N 406 LEU CD1 HD12 sing N N 407 LEU CD1 HD13 sing N N 408 LEU CD2 HD21 sing N N 409 LEU CD2 HD22 sing N N 410 LEU CD2 HD23 sing N N 411 LEU OXT HXT sing N N 412 LYS N CA sing N N 413 LYS N H sing N N 414 LYS N H2 sing N N 415 LYS CA C sing N N 416 LYS CA CB sing N N 417 LYS CA HA sing N N 418 LYS C O doub N N 419 LYS C OXT sing N N 420 LYS CB CG sing N N 421 LYS CB HB2 sing N N 422 LYS CB HB3 sing N N 423 LYS CG CD sing N N 424 LYS CG HG2 sing N N 425 LYS CG HG3 sing N N 426 LYS CD CE sing N N 427 LYS CD HD2 sing N N 428 LYS CD HD3 sing N N 429 LYS CE NZ sing N N 430 LYS CE HE2 sing N N 431 LYS CE HE3 sing N N 432 LYS NZ HZ1 sing N N 433 LYS NZ HZ2 sing N N 434 LYS NZ HZ3 sing N N 435 LYS OXT HXT sing N N 436 MDK P O1P doub N N 437 MDK P O2P sing N N 438 MDK P "O5'" sing N N 439 MDK N1 C2 sing N N 440 MDK N1 C6 sing N N 441 MDK N1 "C1'" sing N N 442 MDK C2 O2 doub N N 443 MDK C2 C3 sing N N 444 MDK C3 C4 doub N N 445 MDK C3 C21 sing N N 446 MDK C4 N4 sing N N 447 MDK C4 C5 sing N N 448 MDK N4 HN4 sing N N 449 MDK N4 HN4A sing N N 450 MDK C5 C6 doub N N 451 MDK C5 H5 sing N N 452 MDK C6 H6 sing N N 453 MDK "C1'" "C2'" sing N N 454 MDK "C1'" "O4'" sing N N 455 MDK "C1'" "H1'" sing N N 456 MDK "C2'" "C3'" sing N N 457 MDK "C2'" "H2'" sing N N 458 MDK "C2'" "H2'A" sing N N 459 MDK C21 H21 sing N N 460 MDK C21 H21A sing N N 461 MDK C21 H21B sing N N 462 MDK "C3'" "O3'" sing N N 463 MDK "C3'" "C4'" sing N N 464 MDK "C3'" "H3'" sing N N 465 MDK "O3'" "HO3'" sing N N 466 MDK "C4'" "O4'" sing N N 467 MDK "C4'" "C5'" sing N N 468 MDK "C4'" "H4'" sing N N 469 MDK "C5'" "O5'" sing N N 470 MDK "C5'" "H5'" sing N N 471 MDK "C5'" "H5'A" sing N N 472 MDK O7 P sing N N 473 MDK O2P H16 sing N N 474 MDK O7 H17 sing N N 475 MET N CA sing N N 476 MET N H sing N N 477 MET N H2 sing N N 478 MET CA C sing N N 479 MET CA CB sing N N 480 MET CA HA sing N N 481 MET C O doub N N 482 MET C OXT sing N N 483 MET CB CG sing N N 484 MET CB HB2 sing N N 485 MET CB HB3 sing N N 486 MET CG SD sing N N 487 MET CG HG2 sing N N 488 MET CG HG3 sing N N 489 MET SD CE sing N N 490 MET CE HE1 sing N N 491 MET CE HE2 sing N N 492 MET CE HE3 sing N N 493 MET OXT HXT sing N N 494 PHE N CA sing N N 495 PHE N H sing N N 496 PHE N H2 sing N N 497 PHE CA C sing N N 498 PHE CA CB sing N N 499 PHE CA HA sing N N 500 PHE C O doub N N 501 PHE C OXT sing N N 502 PHE CB CG sing N N 503 PHE CB HB2 sing N N 504 PHE CB HB3 sing N N 505 PHE CG CD1 doub Y N 506 PHE CG CD2 sing Y N 507 PHE CD1 CE1 sing Y N 508 PHE CD1 HD1 sing N N 509 PHE CD2 CE2 doub Y N 510 PHE CD2 HD2 sing N N 511 PHE CE1 CZ doub Y N 512 PHE CE1 HE1 sing N N 513 PHE CE2 CZ sing Y N 514 PHE CE2 HE2 sing N N 515 PHE CZ HZ sing N N 516 PHE OXT HXT sing N N 517 PRO N CA sing N N 518 PRO N CD sing N N 519 PRO N H sing N N 520 PRO CA C sing N N 521 PRO CA CB sing N N 522 PRO CA HA sing N N 523 PRO C O doub N N 524 PRO C OXT sing N N 525 PRO CB CG sing N N 526 PRO CB HB2 sing N N 527 PRO CB HB3 sing N N 528 PRO CG CD sing N N 529 PRO CG HG2 sing N N 530 PRO CG HG3 sing N N 531 PRO CD HD2 sing N N 532 PRO CD HD3 sing N N 533 PRO OXT HXT sing N N 534 SER N CA sing N N 535 SER N H sing N N 536 SER N H2 sing N N 537 SER CA C sing N N 538 SER CA CB sing N N 539 SER CA HA sing N N 540 SER C O doub N N 541 SER C OXT sing N N 542 SER CB OG sing N N 543 SER CB HB2 sing N N 544 SER CB HB3 sing N N 545 SER OG HG sing N N 546 SER OXT HXT sing N N 547 THR N CA sing N N 548 THR N H sing N N 549 THR N H2 sing N N 550 THR CA C sing N N 551 THR CA CB sing N N 552 THR CA HA sing N N 553 THR C O doub N N 554 THR C OXT sing N N 555 THR CB OG1 sing N N 556 THR CB CG2 sing N N 557 THR CB HB sing N N 558 THR OG1 HG1 sing N N 559 THR CG2 HG21 sing N N 560 THR CG2 HG22 sing N N 561 THR CG2 HG23 sing N N 562 THR OXT HXT sing N N 563 TRP N CA sing N N 564 TRP N H sing N N 565 TRP N H2 sing N N 566 TRP CA C sing N N 567 TRP CA CB sing N N 568 TRP CA HA sing N N 569 TRP C O doub N N 570 TRP C OXT sing N N 571 TRP CB CG sing N N 572 TRP CB HB2 sing N N 573 TRP CB HB3 sing N N 574 TRP CG CD1 doub Y N 575 TRP CG CD2 sing Y N 576 TRP CD1 NE1 sing Y N 577 TRP CD1 HD1 sing N N 578 TRP CD2 CE2 doub Y N 579 TRP CD2 CE3 sing Y N 580 TRP NE1 CE2 sing Y N 581 TRP NE1 HE1 sing N N 582 TRP CE2 CZ2 sing Y N 583 TRP CE3 CZ3 doub Y N 584 TRP CE3 HE3 sing N N 585 TRP CZ2 CH2 doub Y N 586 TRP CZ2 HZ2 sing N N 587 TRP CZ3 CH2 sing Y N 588 TRP CZ3 HZ3 sing N N 589 TRP CH2 HH2 sing N N 590 TRP OXT HXT sing N N 591 TYR N CA sing N N 592 TYR N H sing N N 593 TYR N H2 sing N N 594 TYR CA C sing N N 595 TYR CA CB sing N N 596 TYR CA HA sing N N 597 TYR C O doub N N 598 TYR C OXT sing N N 599 TYR CB CG sing N N 600 TYR CB HB2 sing N N 601 TYR CB HB3 sing N N 602 TYR CG CD1 doub Y N 603 TYR CG CD2 sing Y N 604 TYR CD1 CE1 sing Y N 605 TYR CD1 HD1 sing N N 606 TYR CD2 CE2 doub Y N 607 TYR CD2 HD2 sing N N 608 TYR CE1 CZ doub Y N 609 TYR CE1 HE1 sing N N 610 TYR CE2 CZ sing Y N 611 TYR CE2 HE2 sing N N 612 TYR CZ OH sing N N 613 TYR OH HH sing N N 614 TYR OXT HXT sing N N 615 VAL N CA sing N N 616 VAL N H sing N N 617 VAL N H2 sing N N 618 VAL CA C sing N N 619 VAL CA CB sing N N 620 VAL CA HA sing N N 621 VAL C O doub N N 622 VAL C OXT sing N N 623 VAL CB CG1 sing N N 624 VAL CB CG2 sing N N 625 VAL CB HB sing N N 626 VAL CG1 HG11 sing N N 627 VAL CG1 HG12 sing N N 628 VAL CG1 HG13 sing N N 629 VAL CG2 HG21 sing N N 630 VAL CG2 HG22 sing N N 631 VAL CG2 HG23 sing N N 632 VAL OXT HXT sing N N 633 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3O1R 'double helix' 3O1R 'b-form double helix' 3O1R 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 13 1_555 -0.122 -0.198 -0.312 -4.674 -7.624 -1.014 1 B_DA2:DT13_C B 2 ? C 13 ? 20 1 1 B DG 2 1_555 C DC 12 1_555 -0.248 -0.395 0.333 9.837 -7.449 -4.525 2 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 B DG 3 1_555 C DC 11 1_555 -0.229 -0.209 0.242 2.986 -9.773 1.769 3 B_DG4:DC11_C B 4 ? C 11 ? 19 1 1 B DT 4 1_555 C DA 10 1_555 0.442 0.288 -0.445 12.660 -0.231 0.751 4 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DA 5 1_555 C DT 9 1_555 -0.352 -0.237 0.365 20.558 -5.793 -5.751 5 B_DA6:DT9_C B 6 ? C 9 ? 20 1 1 B DA 8 1_555 C DT 6 1_555 -0.036 -0.122 -0.245 -24.861 -4.825 3.134 6 B_DA9:DT6_C B 9 ? C 6 ? 20 1 1 B DC 10 1_555 C DG 4 1_555 0.342 -0.052 0.119 -4.230 -7.155 2.044 7 B_DC11:DG4_C B 11 ? C 4 ? 19 1 1 B DG 11 1_555 C DC 3 1_555 -0.319 -0.153 0.089 3.293 -5.854 -2.149 8 B_DG12:DC3_C B 12 ? C 3 ? 19 1 1 B DT 12 1_555 C DA 2 1_555 0.081 -0.148 0.027 4.998 -6.325 2.584 9 B_DT13:DA2_C B 13 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 13 1_555 B DG 2 1_555 C DC 12 1_555 0.084 -0.404 2.924 -7.414 5.245 29.787 -1.638 -1.407 2.716 9.918 14.017 31.110 1 BB_DA2DG3:DC12DT13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DG 2 1_555 C DC 12 1_555 B DG 3 1_555 C DC 11 1_555 -0.033 -0.496 3.402 -2.276 3.653 35.861 -1.334 -0.279 3.333 5.906 3.681 36.110 2 BB_DG3DG4:DC11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DG 3 1_555 C DC 11 1_555 B DT 4 1_555 C DA 10 1_555 0.125 -0.122 3.048 4.848 7.139 26.648 -1.829 0.811 2.895 14.998 -10.184 27.986 3 BB_DG4DT5:DA10DC11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 4 1_555 C DA 10 1_555 B DA 5 1_555 C DT 9 1_555 -0.891 0.891 3.246 -4.574 -0.610 37.401 1.460 0.783 3.314 -0.946 7.099 37.674 4 BB_DT5DA6:DT9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 8 1_555 C DT 6 1_555 B DC 10 1_555 C DG 4 1_555 0.348 -0.351 6.177 5.769 6.686 64.726 -0.848 0.129 6.128 6.215 -5.363 65.261 5 BB_DA9DC11:DG4DT6_CC B 9 ? C 6 ? B 11 ? C 4 ? 1 B DC 10 1_555 C DG 4 1_555 B DG 11 1_555 C DC 3 1_555 -0.724 -0.183 3.155 -0.106 5.583 27.971 -1.595 1.448 3.063 11.406 0.217 28.512 6 BB_DC11DG12:DC3DG4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DG 11 1_555 C DC 3 1_555 B DT 12 1_555 C DA 2 1_555 0.169 -0.441 3.305 0.699 1.051 31.405 -1.013 -0.179 3.292 1.941 -1.291 31.429 7 BB_DG12DT13:DA2DC3_CC B 12 ? C 3 ? B 13 ? C 2 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BIE _pdbx_initial_refinement_model.details 'PDB entry 3BIE' # _atom_sites.entry_id 3O1R _atom_sites.fract_transf_matrix[1][1] 0.024117 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007948 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013187 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020258 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_