HEADER OXIDOREDUCTASE 22-JUL-10 3O2G TITLE CRYSTAL STRUCTURE OF HUMAN GAMMA-BUTYROBETAINE,2-OXOGLUTARATE TITLE 2 DIOXYGENASE 1 (BBOX1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-BUTYROBETAINE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-BUTYROBETAINE,2-OXOGLUTARATE DIOXYGENASE, GAMMA- COMPND 5 BUTYROBETAINE HYDROXYLASE, GAMMA-BBH; COMPND 6 EC: 1.14.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BBOX1, BBH, BBOX; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH10BAC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-LIC-BSE KEYWDS GAMMA-BUTYROBETAINE HYDROXYLASE, GAMMA-BUTYROBETAINE, 2-OXOGLUTARATE KEYWDS 2 DIOXYGENASE 1, OXIDOREDUCTASE, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,G.KOCHAN,M.A.MCDONOUGH,F.VON DELFT,I.K.H.LEUNG,L.HENRY, AUTHOR 2 T.D.W.CLARIDGE,E.PILKA,E.UGOCHUKWU,J.MUNIZ,P.FILIPPAKOPOULOS, AUTHOR 3 C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,K.L.KAVANAGH, AUTHOR 4 C.J.SCHOFIELD,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 21-FEB-24 3O2G 1 REMARK SEQADV LINK REVDAT 2 20-MAR-19 3O2G 1 JRNL REVDAT 1 15-SEP-10 3O2G 0 JRNL AUTH I.K.LEUNG,T.J.KROJER,G.T.KOCHAN,L.HENRY,F.VON DELFT, JRNL AUTH 2 T.D.CLARIDGE,U.OPPERMANN,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL AND MECHANISTIC STUDIES ON GAMMA-BUTYROBETAINE JRNL TITL 2 HYDROXYLASE. JRNL REF CHEM. BIOL. V. 17 1316 2010 JRNL REFN ISSN 1879-1301 JRNL PMID 21168767 JRNL DOI 10.1016/J.CHEMBIOL.2010.09.016 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3321 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2260 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4519 ; 1.554 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5507 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;34.982 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;12.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3714 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 704 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4397 29.8216 123.8685 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: 0.0412 REMARK 3 T33: 0.0771 T12: 0.0235 REMARK 3 T13: 0.0065 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.8846 L22: 0.6538 REMARK 3 L33: 2.0847 L12: 0.0805 REMARK 3 L13: -0.8519 L23: 0.3784 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0866 S13: 0.0335 REMARK 3 S21: -0.0321 S22: -0.0628 S23: 0.2041 REMARK 3 S31: -0.1005 S32: -0.2627 S33: 0.0609 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4256 30.2127 87.7316 REMARK 3 T TENSOR REMARK 3 T11: 0.0269 T22: 0.0477 REMARK 3 T33: 0.0084 T12: 0.0152 REMARK 3 T13: -0.0068 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.7789 L22: 1.0538 REMARK 3 L33: 0.7927 L12: -0.2867 REMARK 3 L13: -0.0481 L23: 0.0807 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: 0.0496 S13: 0.0052 REMARK 3 S21: -0.0272 S22: 0.0213 S23: 0.0850 REMARK 3 S31: -0.1232 S32: -0.0565 S33: 0.0231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3O2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 84.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 20% PEG 3350, REMARK 280 6% DIAMINE HEXAN, 10MM ZNSO4, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.69300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.99967 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.30633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.69300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.99967 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.30633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.69300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.99967 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.30633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.69300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.99967 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.30633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.69300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.99967 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.30633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.69300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.99967 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.30633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.99934 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 136.61267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.99934 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 136.61267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.99934 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 136.61267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.99934 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 136.61267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.99934 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 136.61267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.99934 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 136.61267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 204.91900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ARG A 132 CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CD OE1 OE2 REMARK 470 LYS A 139 NZ REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 167 CD CE NZ REMARK 470 GLN A 247 CG CD OE1 NE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLN A 381 CD OE1 NE2 REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 385 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 669 O HOH A 751 1.85 REMARK 500 OD2 ASP A 23 O HOH A 670 2.08 REMARK 500 O HOH A 441 O HOH A 505 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 396 O HOH A 622 6556 1.82 REMARK 500 OG SER A 200 O HOH A 605 4556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 0.03 81.79 REMARK 500 GLU A 24 -1.65 83.35 REMARK 500 TYR A 194 42.50 -93.04 REMARK 500 ASP A 265 -97.84 -147.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 389 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 40 SG 110.4 REMARK 620 3 CYS A 43 SG 116.1 110.4 REMARK 620 4 HIS A 82 NE2 111.8 108.2 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 388 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 ASP A 204 OD1 93.0 REMARK 620 3 HIS A 347 NE2 89.0 88.6 REMARK 620 4 OGA A 390 O2 97.5 100.8 168.2 REMARK 620 5 OGA A 390 O2' 93.7 173.3 91.5 78.3 REMARK 620 6 HOH A 744 O 177.2 88.8 93.1 80.1 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NM2 A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 396 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MS5 RELATED DB: PDB DBREF 3O2G A 1 387 UNP O75936 BODG_HUMAN 1 387 SEQADV 3O2G SER A 0 UNP O75936 EXPRESSION TAG SEQRES 1 A 388 SER MET ALA CYS THR ILE GLN LYS ALA GLU ALA LEU ASP SEQRES 2 A 388 GLY ALA HIS LEU MET GLN ILE LEU TRP TYR ASP GLU GLU SEQRES 3 A 388 GLU SER LEU TYR PRO ALA VAL TRP LEU ARG ASP ASN CYS SEQRES 4 A 388 PRO CYS SER ASP CYS TYR LEU ASP SER ALA LYS ALA ARG SEQRES 5 A 388 LYS LEU LEU VAL GLU ALA LEU ASP VAL ASN ILE GLY ILE SEQRES 6 A 388 LYS GLY LEU ILE PHE ASP ARG LYS LYS VAL TYR ILE THR SEQRES 7 A 388 TRP PRO ASP GLU HIS TYR SER GLU PHE GLN ALA ASP TRP SEQRES 8 A 388 LEU LYS LYS ARG CYS PHE SER LYS GLN ALA ARG ALA LYS SEQRES 9 A 388 LEU GLN ARG GLU LEU PHE PHE PRO GLU CYS GLN TYR TRP SEQRES 10 A 388 GLY SER GLU LEU GLN LEU PRO THR LEU ASP PHE GLU ASP SEQRES 11 A 388 VAL LEU ARG TYR ASP GLU HIS ALA TYR LYS TRP LEU SER SEQRES 12 A 388 THR LEU LYS LYS VAL GLY ILE VAL ARG LEU THR GLY ALA SEQRES 13 A 388 SER ASP LYS PRO GLY GLU VAL SER LYS LEU GLY LYS ARG SEQRES 14 A 388 MET GLY PHE LEU TYR LEU THR PHE TYR GLY HIS THR TRP SEQRES 15 A 388 GLN VAL GLN ASP LYS ILE ASP ALA ASN ASN VAL ALA TYR SEQRES 16 A 388 THR THR GLY LYS LEU SER PHE HIS THR ASP TYR PRO ALA SEQRES 17 A 388 LEU HIS HIS PRO PRO GLY VAL GLN LEU LEU HIS CYS ILE SEQRES 18 A 388 LYS GLN THR VAL THR GLY GLY ASP SER GLU ILE VAL ASP SEQRES 19 A 388 GLY PHE ASN VAL CYS GLN LYS LEU LYS LYS ASN ASN PRO SEQRES 20 A 388 GLN ALA PHE GLN ILE LEU SER SER THR PHE VAL ASP PHE SEQRES 21 A 388 THR ASP ILE GLY VAL ASP TYR CYS ASP PHE SER VAL GLN SEQRES 22 A 388 SER LYS HIS LYS ILE ILE GLU LEU ASP ASP LYS GLY GLN SEQRES 23 A 388 VAL VAL ARG ILE ASN PHE ASN ASN ALA THR ARG ASP THR SEQRES 24 A 388 ILE PHE ASP VAL PRO VAL GLU ARG VAL GLN PRO PHE TYR SEQRES 25 A 388 ALA ALA LEU LYS GLU PHE VAL ASP LEU MET ASN SER LYS SEQRES 26 A 388 GLU SER LYS PHE THR PHE LYS MET ASN PRO GLY ASP VAL SEQRES 27 A 388 ILE THR PHE ASP ASN TRP ARG LEU LEU HIS GLY ARG ARG SEQRES 28 A 388 SER TYR GLU ALA GLY THR GLU ILE SER ARG HIS LEU GLU SEQRES 29 A 388 GLY ALA TYR ALA ASP TRP ASP VAL VAL MET SER ARG LEU SEQRES 30 A 388 ARG ILE LEU ARG GLN ARG VAL GLU ASN GLY ASN HET ZN A 388 1 HET ZN A 389 1 HET OGA A 390 10 HET NM2 A 391 10 HET EDO A 392 4 HET EDO A 393 4 HET EDO A 394 4 HET EDO A 395 4 HET EDO A 396 4 HETNAM ZN ZINC ION HETNAM OGA N-OXALYLGLYCINE HETNAM NM2 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 OGA C4 H5 N O5 FORMUL 5 NM2 C7 H16 N O2 1+ FORMUL 6 EDO 5(C2 H6 O2) FORMUL 11 HOH *437(H2 O) HELIX 1 1 ALA A 31 ASN A 37 1 7 HELIX 2 2 LEU A 54 LEU A 58 5 5 HELIX 3 3 ALA A 88 ARG A 94 1 7 HELIX 4 4 SER A 97 PHE A 110 1 14 HELIX 5 5 PHE A 127 TYR A 133 1 7 HELIX 6 6 TYR A 133 GLY A 148 1 16 HELIX 7 7 GLY A 160 GLY A 170 1 11 HELIX 8 8 ASN A 191 THR A 195 5 5 HELIX 9 9 GLY A 234 ASN A 245 1 12 HELIX 10 10 ASN A 245 SER A 253 1 9 HELIX 11 11 PRO A 303 GLU A 305 5 3 HELIX 12 12 ARG A 306 SER A 323 1 18 HELIX 13 13 ASP A 368 ASN A 385 1 18 SHEET 1 A 3 ILE A 5 LEU A 11 0 SHEET 2 A 3 LEU A 16 TRP A 21 -1 O LEU A 20 N LYS A 7 SHEET 3 A 3 GLU A 26 PRO A 30 -1 O SER A 27 N ILE A 19 SHEET 1 B 2 TYR A 44 LEU A 45 0 SHEET 2 B 2 ALA A 50 ARG A 51 -1 O ALA A 50 N LEU A 45 SHEET 1 C 3 GLY A 66 PHE A 69 0 SHEET 2 C 3 LYS A 73 THR A 77 -1 O TYR A 75 N ILE A 68 SHEET 3 C 3 TYR A 83 GLN A 87 -1 O SER A 84 N ILE A 76 SHEET 1 D 6 THR A 124 ASP A 126 0 SHEET 2 D 6 ILE A 149 THR A 153 1 O THR A 153 N LEU A 125 SHEET 3 D 6 VAL A 337 ASP A 341 -1 O VAL A 337 N LEU A 152 SHEET 4 D 6 VAL A 214 LYS A 221 -1 N LEU A 217 O ILE A 338 SHEET 5 D 6 HIS A 361 ALA A 367 -1 O GLU A 363 N HIS A 218 SHEET 6 D 6 TRP A 181 VAL A 183 -1 N VAL A 183 O LEU A 362 SHEET 1 E 4 LEU A 199 HIS A 202 0 SHEET 2 E 4 LEU A 345 ARG A 349 -1 O ARG A 349 N LEU A 199 SHEET 3 E 4 SER A 229 ASP A 233 -1 N VAL A 232 O LEU A 346 SHEET 4 E 4 PHE A 328 PHE A 330 -1 O PHE A 330 N SER A 229 SHEET 1 F 2 PHE A 256 VAL A 264 0 SHEET 2 F 2 ASP A 268 LYS A 276 -1 O HIS A 275 N VAL A 257 SHEET 1 G 2 ILE A 278 LEU A 280 0 SHEET 2 G 2 VAL A 286 ILE A 289 -1 O VAL A 287 N GLU A 279 LINK SG CYS A 38 ZN ZN A 389 1555 1555 2.28 LINK SG CYS A 40 ZN ZN A 389 1555 1555 2.29 LINK SG CYS A 43 ZN ZN A 389 1555 1555 2.34 LINK NE2 HIS A 82 ZN ZN A 389 1555 1555 2.14 LINK NE2 HIS A 202 ZN ZN A 388 1555 1555 2.10 LINK OD1 ASP A 204 ZN ZN A 388 1555 1555 2.14 LINK NE2 HIS A 347 ZN ZN A 388 1555 1555 2.13 LINK ZN ZN A 388 O2 OGA A 390 1555 1555 2.11 LINK ZN ZN A 388 O2' OGA A 390 1555 1555 2.13 LINK ZN ZN A 388 O HOH A 744 1555 1555 2.09 SITE 1 AC1 5 HIS A 202 ASP A 204 HIS A 347 OGA A 390 SITE 2 AC1 5 HOH A 744 SITE 1 AC2 4 CYS A 38 CYS A 40 CYS A 43 HIS A 82 SITE 1 AC3 13 VAL A 183 ALA A 193 LEU A 199 HIS A 202 SITE 2 AC3 13 ASP A 204 HIS A 347 ARG A 349 ARG A 360 SITE 3 AC3 13 LEU A 362 ZN A 388 NM2 A 391 HOH A 584 SITE 4 AC3 13 HOH A 744 SITE 1 AC4 12 TYR A 177 TRP A 181 ASN A 191 TYR A 194 SITE 2 AC4 12 ASP A 204 TYR A 205 PRO A 206 ASN A 292 SITE 3 AC4 12 TYR A 366 OGA A 390 HOH A 403 HOH A 486 SITE 1 AC5 4 HIS A 209 LYS A 274 HOH A 752 HOH A 812 SITE 1 AC6 9 LEU A 16 TRP A 116 GLY A 117 GLU A 119 SITE 2 AC6 9 ASN A 236 LYS A 240 HOH A 405 HOH A 603 SITE 3 AC6 9 HOH A 666 SITE 1 AC7 4 LYS A 98 ARG A 101 PRO A 303 HOH A 817 SITE 1 AC8 8 CYS A 238 GLN A 239 PHE A 249 GLY A 284 SITE 2 AC8 8 GLN A 285 VAL A 286 HOH A 506 HOH A 657 SITE 1 AC9 5 GLU A 26 LEU A 120 GLN A 121 HOH A 622 SITE 2 AC9 5 HOH A 691 CRYST1 107.386 107.386 204.919 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009312 0.005376 0.000000 0.00000 SCALE2 0.000000 0.010753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004880 0.00000