HEADER PROTEIN BINDING 22-JUL-10 3O2T TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN SYMPLEKIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYMPLEKIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYMPK, SPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT REPEAT, SCAFFOLD, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.TONG,K.XIANG,S.XIANG REVDAT 4 21-FEB-24 3O2T 1 REMARK SEQADV REVDAT 3 08-NOV-17 3O2T 1 REMARK REVDAT 2 20-OCT-10 3O2T 1 JRNL REVDAT 1 06-OCT-10 3O2T 0 JRNL AUTH K.XIANG,T.NAGAIKE,S.XIANG,T.KILIC,M.M.BEH,J.L.MANLEY,L.TONG JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN SYMPLEKIN-SSU72-CTD JRNL TITL 2 PHOSPHOPEPTIDE COMPLEX. JRNL REF NATURE V. 467 729 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20861839 JRNL DOI 10.1038/NATURE09391 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 59384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 468 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2442 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3300 ; 1.527 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 4.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;42.231 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;13.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.215 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1742 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 1.632 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2466 ; 2.674 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 924 ; 4.291 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 834 ; 6.391 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2442 ; 1.935 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3318 13.3134 -7.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0192 REMARK 3 T33: 0.0389 T12: -0.0056 REMARK 3 T13: -0.0200 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.9791 L22: 0.5619 REMARK 3 L33: 0.7746 L12: -0.1730 REMARK 3 L13: -0.1677 L23: 0.0918 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0902 S13: -0.0025 REMARK 3 S21: -0.0190 S22: 0.0022 S23: -0.0359 REMARK 3 S31: 0.0141 S32: 0.0651 S33: 0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62696 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.3676 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.697 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB THEN SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM BIS-TRIS, 40MM AMMONIUM SULFATE, REMARK 280 40% (V/V) PENTAERYTHRITOL ETHOXYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.51650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 ARG A 148 REMARK 465 PRO A 246 REMARK 465 ALA A 247 REMARK 465 LEU A 285 REMARK 465 PRO A 286 REMARK 465 PRO A 287 REMARK 465 THR A 288 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 LYS A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 ARG A 346 REMARK 465 LYS A 347 REMARK 465 ARG A 348 REMARK 465 PRO A 349 REMARK 465 ARG A 350 REMARK 465 ASP A 351 REMARK 465 ASP A 352 REMARK 465 SER A 353 REMARK 465 ASP A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 LEU A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 MET A 360 REMARK 465 LYS A 361 REMARK 465 LEU A 362 REMARK 465 GLU A 363 REMARK 465 PRO A 364 REMARK 465 ASN A 365 REMARK 465 LEU A 366 REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 ASP A 369 REMARK 465 ASP A 370 REMARK 465 GLU A 371 REMARK 465 ASP A 372 REMARK 465 LYS A 373 REMARK 465 ASP A 374 REMARK 465 LEU A 375 REMARK 465 GLU A 376 REMARK 465 PRO A 377 REMARK 465 GLY A 378 REMARK 465 PRO A 379 REMARK 465 SER A 380 REMARK 465 GLY A 381 REMARK 465 THR A 382 REMARK 465 SER A 383 REMARK 465 LYS A 384 REMARK 465 ALA A 385 REMARK 465 SER A 386 REMARK 465 ALA A 387 REMARK 465 GLN A 388 REMARK 465 ILE A 389 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 GLN A 392 REMARK 465 SER A 393 REMARK 465 ASP A 394 REMARK 465 THR A 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER A 162 O HOH A 708 1.39 REMARK 500 O HOH A 449 O HOH A 710 1.56 REMARK 500 O HOH A 432 O HOH A 694 1.78 REMARK 500 CD2 HIS A 245 O HOH A 505 1.94 REMARK 500 O HOH A 468 O HOH A 686 2.04 REMARK 500 OG SER A 162 O HOH A 708 2.08 REMARK 500 CD1 ILE A 150 O HOH A 696 2.09 REMARK 500 N MET A 30 O HOH A 661 2.12 REMARK 500 O HOH A 483 O HOH A 683 2.17 REMARK 500 O HOH A 411 O HOH A 672 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 468 O HOH A 657 2655 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 173 CB ASP A 173 CG -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 198 CG - SD - CE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 222 -42.71 -130.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O2Q RELATED DB: PDB REMARK 900 RELATED ID: 3O2S RELATED DB: PDB DBREF 3O2T A 30 395 UNP Q92797 SYMPK_HUMAN 30 395 SEQADV 3O2T MET A 10 UNP Q92797 EXPRESSION TAG SEQADV 3O2T GLY A 11 UNP Q92797 EXPRESSION TAG SEQADV 3O2T SER A 12 UNP Q92797 EXPRESSION TAG SEQADV 3O2T SER A 13 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 14 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 15 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 16 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 17 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 18 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 19 UNP Q92797 EXPRESSION TAG SEQADV 3O2T SER A 20 UNP Q92797 EXPRESSION TAG SEQADV 3O2T SER A 21 UNP Q92797 EXPRESSION TAG SEQADV 3O2T GLY A 22 UNP Q92797 EXPRESSION TAG SEQADV 3O2T LEU A 23 UNP Q92797 EXPRESSION TAG SEQADV 3O2T VAL A 24 UNP Q92797 EXPRESSION TAG SEQADV 3O2T PRO A 25 UNP Q92797 EXPRESSION TAG SEQADV 3O2T ARG A 26 UNP Q92797 EXPRESSION TAG SEQADV 3O2T GLY A 27 UNP Q92797 EXPRESSION TAG SEQADV 3O2T SER A 28 UNP Q92797 EXPRESSION TAG SEQADV 3O2T HIS A 29 UNP Q92797 EXPRESSION TAG SEQRES 1 A 386 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 386 LEU VAL PRO ARG GLY SER HIS MET THR THR SER GLU ARG SEQRES 3 A 386 VAL VAL ASP LEU LEU ASN GLN ALA ALA LEU ILE THR ASN SEQRES 4 A 386 ASP SER LYS ILE THR VAL LEU LYS GLN VAL GLN GLU LEU SEQRES 5 A 386 ILE ILE ASN LYS ASP PRO THR LEU LEU ASP ASN PHE LEU SEQRES 6 A 386 ASP GLU ILE ILE ALA PHE GLN ALA ASP LYS SER ILE GLU SEQRES 7 A 386 VAL ARG LYS PHE VAL ILE GLY PHE ILE GLU GLU ALA CYS SEQRES 8 A 386 LYS ARG ASP ILE GLU LEU LEU LEU LYS LEU ILE ALA ASN SEQRES 9 A 386 LEU ASN MET LEU LEU ARG ASP GLU ASN VAL ASN VAL VAL SEQRES 10 A 386 LYS LYS ALA ILE LEU THR MET THR GLN LEU TYR LYS VAL SEQRES 11 A 386 ALA LEU GLN TRP MET VAL LYS SER ARG VAL ILE SER GLU SEQRES 12 A 386 LEU GLN GLU ALA CYS TRP ASP MET VAL SER ALA MET ALA SEQRES 13 A 386 GLY ASP ILE ILE LEU LEU LEU ASP SER ASP ASN ASP GLY SEQRES 14 A 386 ILE ARG THR HIS ALA ILE LYS PHE VAL GLU GLY LEU ILE SEQRES 15 A 386 VAL THR LEU SER PRO ARG MET ALA ASP SER GLU ILE PRO SEQRES 16 A 386 ARG ARG GLN GLU HIS ASP ILE SER LEU ASP ARG ILE PRO SEQRES 17 A 386 ARG ASP HIS PRO TYR ILE GLN TYR ASN VAL LEU TRP GLU SEQRES 18 A 386 GLU GLY LYS ALA ALA LEU GLU GLN LEU LEU LYS PHE MET SEQRES 19 A 386 VAL HIS PRO ALA ILE SER SER ILE ASN LEU THR THR ALA SEQRES 20 A 386 LEU GLY SER LEU ALA ASN ILE ALA ARG GLN ARG PRO MET SEQRES 21 A 386 PHE MET SER GLU VAL ILE GLN ALA TYR GLU THR LEU HIS SEQRES 22 A 386 ALA ASN LEU PRO PRO THR LEU ALA LYS SER GLN VAL SER SEQRES 23 A 386 SER VAL ARG LYS ASN LEU LYS LEU HIS LEU LEU SER VAL SEQRES 24 A 386 LEU LYS HIS PRO ALA SER LEU GLU PHE GLN ALA GLN ILE SEQRES 25 A 386 THR THR LEU LEU VAL ASP LEU GLY THR PRO GLN ALA GLU SEQRES 26 A 386 ILE ALA ARG ASN MET PRO SER SER LYS ASP THR ARG LYS SEQRES 27 A 386 ARG PRO ARG ASP ASP SER ASP SER THR LEU LYS LYS MET SEQRES 28 A 386 LYS LEU GLU PRO ASN LEU GLY GLU ASP ASP GLU ASP LYS SEQRES 29 A 386 ASP LEU GLU PRO GLY PRO SER GLY THR SER LYS ALA SER SEQRES 30 A 386 ALA GLN ILE SER GLY GLN SER ASP THR HET EDO A 1 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *332(H2 O) HELIX 1 1 THR A 31 ILE A 46 1 16 HELIX 2 2 ASP A 49 ASN A 64 1 16 HELIX 3 3 ASP A 66 ASN A 72 5 7 HELIX 4 4 PHE A 73 ALA A 79 1 7 HELIX 5 5 PHE A 80 ASP A 83 5 4 HELIX 6 6 SER A 85 ASP A 103 1 19 HELIX 7 7 LEU A 106 ARG A 119 1 14 HELIX 8 8 ASN A 122 SER A 147 1 26 HELIX 9 9 SER A 151 LEU A 171 1 21 HELIX 10 10 LEU A 172 SER A 174 5 3 HELIX 11 11 ASN A 176 LEU A 194 1 19 HELIX 12 12 PRO A 204 GLU A 208 5 5 HELIX 13 13 SER A 212 ILE A 216 5 5 HELIX 14 14 GLN A 224 MET A 243 1 20 HELIX 15 15 SER A 249 ARG A 267 1 19 HELIX 16 16 PHE A 270 ASN A 284 1 15 HELIX 17 17 ALA A 290 SER A 292 5 3 HELIX 18 18 GLN A 293 LYS A 310 1 18 HELIX 19 19 HIS A 311 GLU A 316 5 6 HELIX 20 20 PHE A 317 LEU A 328 1 12 HELIX 21 21 PRO A 331 ASN A 338 1 8 SITE 1 AC1 7 THR A 134 TYR A 137 LYS A 138 PHE A 186 SITE 2 AC1 7 GLY A 189 LEU A 190 THR A 193 CRYST1 41.596 63.033 62.283 90.00 90.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024041 0.000000 0.000248 0.00000 SCALE2 0.000000 0.015865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016057 0.00000