data_3O34 # _entry.id 3O34 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3O34 RCSB RCSB060604 WWPDB D_1000060604 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O33 . unspecified PDB 3O35 . unspecified PDB 3O36 . unspecified PDB 3O37 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3O34 _pdbx_database_status.recvd_initial_deposition_date 2010-07-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, Z.' 1 'Patel, D.J.' 2 # _citation.id primary _citation.title 'TRIM24 links a non-canonical histone signature to breast cancer.' _citation.journal_abbrev Nature _citation.journal_volume 468 _citation.page_first 927 _citation.page_last 932 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21164480 _citation.pdbx_database_id_DOI 10.1038/nature09542 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tsai, W.W.' 1 primary 'Wang, Z.' 2 primary 'Yiu, T.T.' 3 primary 'Akdemir, K.C.' 4 primary 'Xia, W.' 5 primary 'Winter, S.' 6 primary 'Tsai, C.Y.' 7 primary 'Shi, X.' 8 primary 'Schwarzer, D.' 9 primary 'Plunkett, W.' 10 primary 'Aronow, B.' 11 primary 'Gozani, O.' 12 primary 'Fischle, W.' 13 primary 'Hung, M.C.' 14 primary 'Patel, D.J.' 15 primary 'Barton, M.C.' 16 # _cell.entry_id 3O34 _cell.length_a 36.844 _cell.length_b 41.107 _cell.length_c 125.988 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O34 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription intermediary factor 1-alpha' 21318.395 1 ? ? 'UNP residues 824-1006' ? 2 polymer syn 'Histone H3.1' 2390.825 1 ? ? 'UNP residues 14-35' ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer syn BIOTIN 244.311 1 ? ? ? ? 5 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TIF1-alpha, Tripartite motif-containing protein 24, RING finger protein 82' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTP IDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP DSEVANAGIKLENYFEELLKNLYP ; ;SPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTP IDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP DSEVANAGIKLENYFEELLKNLYP ; A ? 2 'polypeptide(L)' no yes 'GKAPRKQLAT(ALY)AARKSAPATYK' GKAPRKQLATKAARKSAPATYK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 ASN n 1 4 GLU n 1 5 ASP n 1 6 TRP n 1 7 CYS n 1 8 ALA n 1 9 VAL n 1 10 CYS n 1 11 GLN n 1 12 ASN n 1 13 GLY n 1 14 GLY n 1 15 GLU n 1 16 LEU n 1 17 LEU n 1 18 CYS n 1 19 CYS n 1 20 GLU n 1 21 LYS n 1 22 CYS n 1 23 PRO n 1 24 LYS n 1 25 VAL n 1 26 PHE n 1 27 HIS n 1 28 LEU n 1 29 SER n 1 30 CYS n 1 31 HIS n 1 32 VAL n 1 33 PRO n 1 34 THR n 1 35 LEU n 1 36 THR n 1 37 ASN n 1 38 PHE n 1 39 PRO n 1 40 SER n 1 41 GLY n 1 42 GLU n 1 43 TRP n 1 44 ILE n 1 45 CYS n 1 46 THR n 1 47 PHE n 1 48 CYS n 1 49 ARG n 1 50 ASP n 1 51 LEU n 1 52 SER n 1 53 LYS n 1 54 PRO n 1 55 GLU n 1 56 VAL n 1 57 GLU n 1 58 TYR n 1 59 ASP n 1 60 CYS n 1 61 ASP n 1 62 ALA n 1 63 PRO n 1 64 SER n 1 65 HIS n 1 66 ASN n 1 67 SER n 1 68 GLU n 1 69 LYS n 1 70 LYS n 1 71 LYS n 1 72 THR n 1 73 GLU n 1 74 GLY n 1 75 LEU n 1 76 VAL n 1 77 LYS n 1 78 LEU n 1 79 THR n 1 80 PRO n 1 81 ILE n 1 82 ASP n 1 83 LYS n 1 84 ARG n 1 85 LYS n 1 86 CYS n 1 87 GLU n 1 88 ARG n 1 89 LEU n 1 90 LEU n 1 91 LEU n 1 92 PHE n 1 93 LEU n 1 94 TYR n 1 95 CYS n 1 96 HIS n 1 97 GLU n 1 98 MET n 1 99 SER n 1 100 LEU n 1 101 ALA n 1 102 PHE n 1 103 GLN n 1 104 ASP n 1 105 PRO n 1 106 VAL n 1 107 PRO n 1 108 LEU n 1 109 THR n 1 110 VAL n 1 111 PRO n 1 112 ASP n 1 113 TYR n 1 114 TYR n 1 115 LYS n 1 116 ILE n 1 117 ILE n 1 118 LYS n 1 119 ASN n 1 120 PRO n 1 121 MET n 1 122 ASP n 1 123 LEU n 1 124 SER n 1 125 THR n 1 126 ILE n 1 127 LYS n 1 128 LYS n 1 129 ARG n 1 130 LEU n 1 131 GLN n 1 132 GLU n 1 133 ASP n 1 134 TYR n 1 135 SER n 1 136 MET n 1 137 TYR n 1 138 SER n 1 139 LYS n 1 140 PRO n 1 141 GLU n 1 142 ASP n 1 143 PHE n 1 144 VAL n 1 145 ALA n 1 146 ASP n 1 147 PHE n 1 148 ARG n 1 149 LEU n 1 150 ILE n 1 151 PHE n 1 152 GLN n 1 153 ASN n 1 154 CYS n 1 155 ALA n 1 156 GLU n 1 157 PHE n 1 158 ASN n 1 159 GLU n 1 160 PRO n 1 161 ASP n 1 162 SER n 1 163 GLU n 1 164 VAL n 1 165 ALA n 1 166 ASN n 1 167 ALA n 1 168 GLY n 1 169 ILE n 1 170 LYS n 1 171 LEU n 1 172 GLU n 1 173 ASN n 1 174 TYR n 1 175 PHE n 1 176 GLU n 1 177 GLU n 1 178 LEU n 1 179 LEU n 1 180 LYS n 1 181 ASN n 1 182 LEU n 1 183 TYR n 1 184 PRO n 2 1 GLY n 2 2 LYS n 2 3 ALA n 2 4 PRO n 2 5 ARG n 2 6 LYS n 2 7 GLN n 2 8 LEU n 2 9 ALA n 2 10 THR n 2 11 ALY n 2 12 ALA n 2 13 ALA n 2 14 ARG n 2 15 LYS n 2 16 SER n 2 17 ALA n 2 18 PRO n 2 19 ALA n 2 20 THR n 2 21 TYR n 2 22 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TRIM24, RNF82, TIF1, TIF1A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRSFDuet-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TIF1A_HUMAN O15164 1 ;PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPI DKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPD SEVANAGIKLENYFEELLKNLYP ; 824 ? 2 UNP H31_HUMAN P68431 2 GKAPRKQLATKAARKSAPAT 14 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O34 A 2 ? 184 ? O15164 824 ? 1006 ? 824 1006 2 2 3O34 B 1 ? 20 ? P68431 14 ? 33 ? 13 32 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O34 SER A 1 ? UNP O15164 ? ? 'EXPRESSION TAG' 823 1 2 3O34 TYR B 21 ? UNP P68431 ? ? 'SEE REMARK 999' 33 2 2 3O34 LYS B 22 ? UNP P68431 ? ? 'SEE REMARK 999' 34 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BTN non-polymer . BIOTIN ? 'C10 H16 N2 O3 S' 244.311 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3O34 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;100 mM Na-citrate (pH 5.6), 200 mM K/Na-tartrate tetrahydrate and 1.6 M ammonium sulfate , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 197 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 3O34 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 15683 _reflns.number_all 15784 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 46.1 _reflns.B_iso_Wilson_estimate 24.7 _reflns.pdbx_redundancy 8.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 91.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.264 _reflns_shell.meanI_over_sigI_obs 4.6 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1437 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3O34 _refine.ls_number_reflns_obs 15588 _refine.ls_number_reflns_all 15784 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.54 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 796 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3O34 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.23 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1529 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1637 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.36 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.88 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 92 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1437 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3O34 _struct.title 'Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide' _struct.pdbx_descriptor 'Transcription intermediary factor 1-alpha, Histone H3.1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O34 _struct_keywords.pdbx_keywords 'TRANSCRIPTION/protein binding' _struct_keywords.text 'TRIM24, PHD finger, Bromodomain, H3K23ac, breast cancer, TRANSCRIPTION-protein binding complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 58 ? ALA A 62 ? TYR A 880 ALA A 884 5 ? 5 HELX_P HELX_P2 2 THR A 79 ? HIS A 96 ? THR A 901 HIS A 918 1 ? 18 HELX_P HELX_P3 3 GLU A 97 ? GLN A 103 ? GLU A 919 GLN A 925 5 ? 7 HELX_P HELX_P4 4 ASP A 112 ? ILE A 117 ? ASP A 934 ILE A 939 1 ? 6 HELX_P HELX_P5 5 ASP A 122 ? GLU A 132 ? ASP A 944 GLU A 954 1 ? 11 HELX_P HELX_P6 6 LYS A 139 ? ASN A 158 ? LYS A 961 ASN A 980 1 ? 20 HELX_P HELX_P7 7 SER A 162 ? TYR A 183 ? SER A 984 TYR A 1005 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B THR 10 C ? ? ? 1_555 B ALY 11 N ? ? B THR 22 B ALY 23 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? B ALY 11 C ? ? ? 1_555 B ALA 12 N ? ? B ALY 23 B ALA 24 1_555 ? ? ? ? ? ? ? 1.320 ? metalc1 metalc ? ? A HIS 27 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 849 A ZN 1 1_555 ? ? ? ? ? ? ? 2.028 ? metalc2 metalc ? ? A CYS 30 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 852 A ZN 1 1_555 ? ? ? ? ? ? ? 2.306 ? metalc3 metalc ? ? A CYS 7 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 829 A ZN 1 1_555 ? ? ? ? ? ? ? 2.353 ? metalc4 metalc ? ? A CYS 48 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 870 A ZN 2 1_555 ? ? ? ? ? ? ? 2.393 ? metalc5 metalc ? ? A CYS 10 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 832 A ZN 1 1_555 ? ? ? ? ? ? ? 2.418 ? metalc6 metalc ? ? A CYS 45 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 867 A ZN 2 1_555 ? ? ? ? ? ? ? 2.421 ? metalc7 metalc ? ? A CYS 19 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 841 A ZN 2 1_555 ? ? ? ? ? ? ? 2.454 ? metalc8 metalc ? ? A CYS 22 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 844 A ZN 2 1_555 ? ? ? ? ? ? ? 2.457 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 32 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 854 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 33 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 855 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.84 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 17 ? CYS A 18 ? LEU A 839 CYS A 840 A 2 VAL A 25 ? PHE A 26 ? VAL A 847 PHE A 848 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 17 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 839 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 26 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 848 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 7 ? CYS A 829 . ? 1_555 ? 2 AC1 4 CYS A 10 ? CYS A 832 . ? 1_555 ? 3 AC1 4 HIS A 27 ? HIS A 849 . ? 1_555 ? 4 AC1 4 CYS A 30 ? CYS A 852 . ? 1_555 ? 5 AC2 4 CYS A 19 ? CYS A 841 . ? 1_555 ? 6 AC2 4 CYS A 22 ? CYS A 844 . ? 1_555 ? 7 AC2 4 CYS A 45 ? CYS A 867 . ? 1_555 ? 8 AC2 4 CYS A 48 ? CYS A 870 . ? 1_555 ? # _database_PDB_matrix.entry_id 3O34 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3O34 _atom_sites.fract_transf_matrix[1][1] 0.027141 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024327 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007937 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 823 ? ? ? A . n A 1 2 PRO 2 824 ? ? ? A . n A 1 3 ASN 3 825 ? ? ? A . n A 1 4 GLU 4 826 826 GLU GLU A . n A 1 5 ASP 5 827 827 ASP ASP A . n A 1 6 TRP 6 828 828 TRP TRP A . n A 1 7 CYS 7 829 829 CYS CYS A . n A 1 8 ALA 8 830 830 ALA ALA A . n A 1 9 VAL 9 831 831 VAL VAL A . n A 1 10 CYS 10 832 832 CYS CYS A . n A 1 11 GLN 11 833 833 GLN GLN A . n A 1 12 ASN 12 834 834 ASN ASN A . n A 1 13 GLY 13 835 835 GLY GLY A . n A 1 14 GLY 14 836 836 GLY GLY A . n A 1 15 GLU 15 837 837 GLU GLU A . n A 1 16 LEU 16 838 838 LEU LEU A . n A 1 17 LEU 17 839 839 LEU LEU A . n A 1 18 CYS 18 840 840 CYS CYS A . n A 1 19 CYS 19 841 841 CYS CYS A . n A 1 20 GLU 20 842 842 GLU GLU A . n A 1 21 LYS 21 843 843 LYS LYS A . n A 1 22 CYS 22 844 844 CYS CYS A . n A 1 23 PRO 23 845 845 PRO PRO A . n A 1 24 LYS 24 846 846 LYS LYS A . n A 1 25 VAL 25 847 847 VAL VAL A . n A 1 26 PHE 26 848 848 PHE PHE A . n A 1 27 HIS 27 849 849 HIS HIS A . n A 1 28 LEU 28 850 850 LEU LEU A . n A 1 29 SER 29 851 851 SER SER A . n A 1 30 CYS 30 852 852 CYS CYS A . n A 1 31 HIS 31 853 853 HIS HIS A . n A 1 32 VAL 32 854 854 VAL VAL A . n A 1 33 PRO 33 855 855 PRO PRO A . n A 1 34 THR 34 856 856 THR THR A . n A 1 35 LEU 35 857 857 LEU LEU A . n A 1 36 THR 36 858 858 THR THR A . n A 1 37 ASN 37 859 859 ASN ASN A . n A 1 38 PHE 38 860 860 PHE PHE A . n A 1 39 PRO 39 861 861 PRO PRO A . n A 1 40 SER 40 862 862 SER SER A . n A 1 41 GLY 41 863 863 GLY GLY A . n A 1 42 GLU 42 864 864 GLU GLU A . n A 1 43 TRP 43 865 865 TRP TRP A . n A 1 44 ILE 44 866 866 ILE ILE A . n A 1 45 CYS 45 867 867 CYS CYS A . n A 1 46 THR 46 868 868 THR THR A . n A 1 47 PHE 47 869 869 PHE PHE A . n A 1 48 CYS 48 870 870 CYS CYS A . n A 1 49 ARG 49 871 871 ARG ARG A . n A 1 50 ASP 50 872 872 ASP ASP A . n A 1 51 LEU 51 873 873 LEU LEU A . n A 1 52 SER 52 874 874 SER SER A . n A 1 53 LYS 53 875 875 LYS LYS A . n A 1 54 PRO 54 876 876 PRO PRO A . n A 1 55 GLU 55 877 877 GLU GLU A . n A 1 56 VAL 56 878 878 VAL VAL A . n A 1 57 GLU 57 879 879 GLU GLU A . n A 1 58 TYR 58 880 880 TYR TYR A . n A 1 59 ASP 59 881 881 ASP ASP A . n A 1 60 CYS 60 882 882 CYS CYS A . n A 1 61 ASP 61 883 883 ASP ASP A . n A 1 62 ALA 62 884 884 ALA ALA A . n A 1 63 PRO 63 885 885 PRO PRO A . n A 1 64 SER 64 886 886 SER SER A . n A 1 65 HIS 65 887 887 HIS HIS A . n A 1 66 ASN 66 888 ? ? ? A . n A 1 67 SER 67 889 ? ? ? A . n A 1 68 GLU 68 890 ? ? ? A . n A 1 69 LYS 69 891 ? ? ? A . n A 1 70 LYS 70 892 892 LYS LYS A . n A 1 71 LYS 71 893 893 LYS LYS A . n A 1 72 THR 72 894 894 THR THR A . n A 1 73 GLU 73 895 895 GLU GLU A . n A 1 74 GLY 74 896 896 GLY GLY A . n A 1 75 LEU 75 897 897 LEU LEU A . n A 1 76 VAL 76 898 898 VAL VAL A . n A 1 77 LYS 77 899 899 LYS LYS A . n A 1 78 LEU 78 900 900 LEU LEU A . n A 1 79 THR 79 901 901 THR THR A . n A 1 80 PRO 80 902 902 PRO PRO A . n A 1 81 ILE 81 903 903 ILE ILE A . n A 1 82 ASP 82 904 904 ASP ASP A . n A 1 83 LYS 83 905 905 LYS LYS A . n A 1 84 ARG 84 906 906 ARG ARG A . n A 1 85 LYS 85 907 907 LYS LYS A . n A 1 86 CYS 86 908 908 CYS CYS A . n A 1 87 GLU 87 909 909 GLU GLU A . n A 1 88 ARG 88 910 910 ARG ARG A . n A 1 89 LEU 89 911 911 LEU LEU A . n A 1 90 LEU 90 912 912 LEU LEU A . n A 1 91 LEU 91 913 913 LEU LEU A . n A 1 92 PHE 92 914 914 PHE PHE A . n A 1 93 LEU 93 915 915 LEU LEU A . n A 1 94 TYR 94 916 916 TYR TYR A . n A 1 95 CYS 95 917 917 CYS CYS A . n A 1 96 HIS 96 918 918 HIS HIS A . n A 1 97 GLU 97 919 919 GLU GLU A . n A 1 98 MET 98 920 920 MET MET A . n A 1 99 SER 99 921 921 SER SER A . n A 1 100 LEU 100 922 922 LEU LEU A . n A 1 101 ALA 101 923 923 ALA ALA A . n A 1 102 PHE 102 924 924 PHE PHE A . n A 1 103 GLN 103 925 925 GLN GLN A . n A 1 104 ASP 104 926 926 ASP ASP A . n A 1 105 PRO 105 927 927 PRO PRO A . n A 1 106 VAL 106 928 928 VAL VAL A . n A 1 107 PRO 107 929 929 PRO PRO A . n A 1 108 LEU 108 930 930 LEU LEU A . n A 1 109 THR 109 931 931 THR THR A . n A 1 110 VAL 110 932 932 VAL VAL A . n A 1 111 PRO 111 933 933 PRO PRO A . n A 1 112 ASP 112 934 934 ASP ASP A . n A 1 113 TYR 113 935 935 TYR TYR A . n A 1 114 TYR 114 936 936 TYR TYR A . n A 1 115 LYS 115 937 937 LYS LYS A . n A 1 116 ILE 116 938 938 ILE ILE A . n A 1 117 ILE 117 939 939 ILE ILE A . n A 1 118 LYS 118 940 940 LYS LYS A . n A 1 119 ASN 119 941 941 ASN ASN A . n A 1 120 PRO 120 942 942 PRO PRO A . n A 1 121 MET 121 943 943 MET MET A . n A 1 122 ASP 122 944 944 ASP ASP A . n A 1 123 LEU 123 945 945 LEU LEU A . n A 1 124 SER 124 946 946 SER SER A . n A 1 125 THR 125 947 947 THR THR A . n A 1 126 ILE 126 948 948 ILE ILE A . n A 1 127 LYS 127 949 949 LYS LYS A . n A 1 128 LYS 128 950 950 LYS LYS A . n A 1 129 ARG 129 951 951 ARG ARG A . n A 1 130 LEU 130 952 952 LEU LEU A . n A 1 131 GLN 131 953 953 GLN GLN A . n A 1 132 GLU 132 954 954 GLU GLU A . n A 1 133 ASP 133 955 955 ASP ASP A . n A 1 134 TYR 134 956 956 TYR TYR A . n A 1 135 SER 135 957 957 SER SER A . n A 1 136 MET 136 958 958 MET MET A . n A 1 137 TYR 137 959 959 TYR TYR A . n A 1 138 SER 138 960 960 SER SER A . n A 1 139 LYS 139 961 961 LYS LYS A . n A 1 140 PRO 140 962 962 PRO PRO A . n A 1 141 GLU 141 963 963 GLU GLU A . n A 1 142 ASP 142 964 964 ASP ASP A . n A 1 143 PHE 143 965 965 PHE PHE A . n A 1 144 VAL 144 966 966 VAL VAL A . n A 1 145 ALA 145 967 967 ALA ALA A . n A 1 146 ASP 146 968 968 ASP ASP A . n A 1 147 PHE 147 969 969 PHE PHE A . n A 1 148 ARG 148 970 970 ARG ARG A . n A 1 149 LEU 149 971 971 LEU LEU A . n A 1 150 ILE 150 972 972 ILE ILE A . n A 1 151 PHE 151 973 973 PHE PHE A . n A 1 152 GLN 152 974 974 GLN GLN A . n A 1 153 ASN 153 975 975 ASN ASN A . n A 1 154 CYS 154 976 976 CYS CYS A . n A 1 155 ALA 155 977 977 ALA ALA A . n A 1 156 GLU 156 978 978 GLU GLU A . n A 1 157 PHE 157 979 979 PHE PHE A . n A 1 158 ASN 158 980 980 ASN ASN A . n A 1 159 GLU 159 981 981 GLU GLU A . n A 1 160 PRO 160 982 982 PRO PRO A . n A 1 161 ASP 161 983 983 ASP ASP A . n A 1 162 SER 162 984 984 SER SER A . n A 1 163 GLU 163 985 985 GLU GLU A . n A 1 164 VAL 164 986 986 VAL VAL A . n A 1 165 ALA 165 987 987 ALA ALA A . n A 1 166 ASN 166 988 988 ASN ASN A . n A 1 167 ALA 167 989 989 ALA ALA A . n A 1 168 GLY 168 990 990 GLY GLY A . n A 1 169 ILE 169 991 991 ILE ILE A . n A 1 170 LYS 170 992 992 LYS LYS A . n A 1 171 LEU 171 993 993 LEU LEU A . n A 1 172 GLU 172 994 994 GLU GLU A . n A 1 173 ASN 173 995 995 ASN ASN A . n A 1 174 TYR 174 996 996 TYR TYR A . n A 1 175 PHE 175 997 997 PHE PHE A . n A 1 176 GLU 176 998 998 GLU GLU A . n A 1 177 GLU 177 999 999 GLU GLU A . n A 1 178 LEU 178 1000 1000 LEU LEU A . n A 1 179 LEU 179 1001 1001 LEU LEU A . n A 1 180 LYS 180 1002 1002 LYS LYS A . n A 1 181 ASN 181 1003 1003 ASN ASN A . n A 1 182 LEU 182 1004 1004 LEU LEU A . n A 1 183 TYR 183 1005 1005 TYR TYR A . n A 1 184 PRO 184 1006 1006 PRO PRO A . n B 2 1 GLY 1 13 ? ? ? B . n B 2 2 LYS 2 14 ? ? ? B . n B 2 3 ALA 3 15 ? ? ? B . n B 2 4 PRO 4 16 ? ? ? B . n B 2 5 ARG 5 17 ? ? ? B . n B 2 6 LYS 6 18 ? ? ? B . n B 2 7 GLN 7 19 ? ? ? B . n B 2 8 LEU 8 20 ? ? ? B . n B 2 9 ALA 9 21 ? ? ? B . n B 2 10 THR 10 22 22 THR THR B . n B 2 11 ALY 11 23 23 ALY ALY B . n B 2 12 ALA 12 24 24 ALA ALA B . n B 2 13 ALA 13 25 25 ALA ALA B . n B 2 14 ARG 14 26 26 ARG ARG B . n B 2 15 LYS 15 27 27 LYS LYS B . n B 2 16 SER 16 28 28 SER SER B . n B 2 17 ALA 17 29 29 ALA ALA B . n B 2 18 PRO 18 30 30 PRO PRO B . n B 2 19 ALA 19 31 31 ALA ALA B . n B 2 20 THR 20 32 32 THR THR B . n B 2 21 TYR 21 33 33 TYR TYR B . n B 2 22 LYS 22 34 ? ? ? B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ALY _pdbx_struct_mod_residue.label_seq_id 11 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id ALY _pdbx_struct_mod_residue.auth_seq_id 23 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'N(6)-ACETYLLYSINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 27 ? A HIS 849 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 30 ? A CYS 852 ? 1_555 117.5 ? 2 ND1 ? A HIS 27 ? A HIS 849 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 7 ? A CYS 829 ? 1_555 98.0 ? 3 SG ? A CYS 30 ? A CYS 852 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 7 ? A CYS 829 ? 1_555 108.2 ? 4 ND1 ? A HIS 27 ? A HIS 849 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 10 ? A CYS 832 ? 1_555 96.7 ? 5 SG ? A CYS 30 ? A CYS 852 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 10 ? A CYS 832 ? 1_555 119.6 ? 6 SG ? A CYS 7 ? A CYS 829 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 10 ? A CYS 832 ? 1_555 114.6 ? 7 SG ? A CYS 48 ? A CYS 870 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 45 ? A CYS 867 ? 1_555 107.0 ? 8 SG ? A CYS 48 ? A CYS 870 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 19 ? A CYS 841 ? 1_555 112.5 ? 9 SG ? A CYS 45 ? A CYS 867 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 19 ? A CYS 841 ? 1_555 111.9 ? 10 SG ? A CYS 48 ? A CYS 870 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 22 ? A CYS 844 ? 1_555 105.7 ? 11 SG ? A CYS 45 ? A CYS 867 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 22 ? A CYS 844 ? 1_555 110.0 ? 12 SG ? A CYS 19 ? A CYS 841 ? 1_555 ZN ? D ZN . ? A ZN 2 ? 1_555 SG ? A CYS 22 ? A CYS 844 ? 1_555 109.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_entry_details.entry_id 3O34 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SYNTHETIC TAG' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 831 ? ? -99.62 -65.90 2 1 TYR A 956 ? ? -107.72 62.47 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id BTN _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O12 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id E _pdbx_unobs_or_zero_occ_atoms.label_comp_id BTN _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 823 ? A SER 1 2 1 Y 1 A PRO 824 ? A PRO 2 3 1 Y 1 A ASN 825 ? A ASN 3 4 1 Y 1 A ASN 888 ? A ASN 66 5 1 Y 1 A SER 889 ? A SER 67 6 1 Y 1 A GLU 890 ? A GLU 68 7 1 Y 1 A LYS 891 ? A LYS 69 8 1 Y 1 B GLY 13 ? B GLY 1 9 1 Y 1 B LYS 14 ? B LYS 2 10 1 Y 1 B ALA 15 ? B ALA 3 11 1 Y 1 B PRO 16 ? B PRO 4 12 1 Y 1 B ARG 17 ? B ARG 5 13 1 Y 1 B LYS 18 ? B LYS 6 14 1 Y 1 B GLN 19 ? B GLN 7 15 1 Y 1 B LEU 20 ? B LEU 8 16 1 Y 1 B ALA 21 ? B ALA 9 17 1 Y 1 B LYS 34 ? B LYS 22 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 BIOTIN BTN 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1 1 ZN ZN A . D 3 ZN 1 2 2 ZN ZN A . E 4 BTN 1 1 1 BTN BTN B . F 5 HOH 1 100 100 HOH HOH A . F 5 HOH 2 101 101 HOH HOH A . F 5 HOH 3 102 102 HOH HOH A . F 5 HOH 4 103 103 HOH HOH A . F 5 HOH 5 104 104 HOH HOH A . F 5 HOH 6 105 105 HOH HOH A . F 5 HOH 7 106 106 HOH HOH A . F 5 HOH 8 107 107 HOH HOH A . F 5 HOH 9 108 108 HOH HOH A . F 5 HOH 10 109 109 HOH HOH A . F 5 HOH 11 110 110 HOH HOH A . F 5 HOH 12 111 111 HOH HOH A . F 5 HOH 13 112 112 HOH HOH A . F 5 HOH 14 113 113 HOH HOH A . F 5 HOH 15 114 114 HOH HOH A . F 5 HOH 16 115 115 HOH HOH A . F 5 HOH 17 116 116 HOH HOH A . F 5 HOH 18 117 117 HOH HOH A . F 5 HOH 19 118 118 HOH HOH A . F 5 HOH 20 119 119 HOH HOH A . F 5 HOH 21 120 120 HOH HOH A . F 5 HOH 22 121 121 HOH HOH A . F 5 HOH 23 122 122 HOH HOH A . F 5 HOH 24 123 123 HOH HOH A . F 5 HOH 25 124 124 HOH HOH A . F 5 HOH 26 125 125 HOH HOH A . F 5 HOH 27 126 126 HOH HOH A . F 5 HOH 28 127 127 HOH HOH A . F 5 HOH 29 128 128 HOH HOH A . F 5 HOH 30 129 129 HOH HOH A . F 5 HOH 31 130 130 HOH HOH A . F 5 HOH 32 131 131 HOH HOH A . F 5 HOH 33 132 132 HOH HOH A . F 5 HOH 34 133 133 HOH HOH A . F 5 HOH 35 134 134 HOH HOH A . F 5 HOH 36 135 135 HOH HOH A . F 5 HOH 37 136 136 HOH HOH A . F 5 HOH 38 137 137 HOH HOH A . F 5 HOH 39 138 138 HOH HOH A . F 5 HOH 40 139 139 HOH HOH A . F 5 HOH 41 140 140 HOH HOH A . F 5 HOH 42 141 141 HOH HOH A . F 5 HOH 43 142 142 HOH HOH A . F 5 HOH 44 143 143 HOH HOH A . F 5 HOH 45 144 144 HOH HOH A . F 5 HOH 46 145 145 HOH HOH A . F 5 HOH 47 146 146 HOH HOH A . F 5 HOH 48 147 147 HOH HOH A . F 5 HOH 49 148 148 HOH HOH A . F 5 HOH 50 149 149 HOH HOH A . F 5 HOH 51 150 150 HOH HOH A . F 5 HOH 52 151 151 HOH HOH A . F 5 HOH 53 152 152 HOH HOH A . F 5 HOH 54 153 153 HOH HOH A . F 5 HOH 55 154 154 HOH HOH A . F 5 HOH 56 155 155 HOH HOH A . F 5 HOH 57 156 156 HOH HOH A . F 5 HOH 58 157 157 HOH HOH A . F 5 HOH 59 158 158 HOH HOH A . F 5 HOH 60 159 159 HOH HOH A . F 5 HOH 61 160 160 HOH HOH A . F 5 HOH 62 161 161 HOH HOH A . F 5 HOH 63 162 162 HOH HOH A . F 5 HOH 64 163 163 HOH HOH A . F 5 HOH 65 164 164 HOH HOH A . F 5 HOH 66 165 165 HOH HOH A . F 5 HOH 67 166 166 HOH HOH A . F 5 HOH 68 167 167 HOH HOH A . F 5 HOH 69 168 168 HOH HOH A . F 5 HOH 70 169 169 HOH HOH A . F 5 HOH 71 170 170 HOH HOH A . F 5 HOH 72 171 171 HOH HOH A . F 5 HOH 73 172 172 HOH HOH A . F 5 HOH 74 173 173 HOH HOH A . F 5 HOH 75 174 174 HOH HOH A . F 5 HOH 76 175 175 HOH HOH A . F 5 HOH 77 176 176 HOH HOH A . F 5 HOH 78 177 177 HOH HOH A . F 5 HOH 79 178 178 HOH HOH A . F 5 HOH 80 179 179 HOH HOH A . F 5 HOH 81 180 180 HOH HOH A . F 5 HOH 82 181 181 HOH HOH A . F 5 HOH 83 182 182 HOH HOH A . F 5 HOH 84 183 183 HOH HOH A . F 5 HOH 85 184 184 HOH HOH A . F 5 HOH 86 185 185 HOH HOH A . G 5 HOH 1 100 100 HOH HOH B . G 5 HOH 2 101 101 HOH HOH B . G 5 HOH 3 102 102 HOH HOH B . G 5 HOH 4 103 103 HOH HOH B . G 5 HOH 5 104 104 HOH HOH B . #