HEADER DNA BINDING PROTEIN 27-JUL-10 3O4N TITLE CRYSTAL STRUCTURE OF THE ROUS ASSOCIATED VIRUS INTEGRASE CATALYTIC TITLE 2 DOMAIN IN MES BUFFER PH 6.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: INRAV1 CCD, RESIDUES 625-771; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS; SOURCE 3 ORGANISM_TAXID: 11886; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETG10A KEYWDS DNA INTEGRATION PROCESS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BALLANDRAS,X.ROBERT,P.GOUET REVDAT 3 06-SEP-23 3O4N 1 REMARK LINK REVDAT 2 11-JAN-12 3O4N 1 JRNL REVDAT 1 31-AUG-11 3O4N 0 JRNL AUTH A.BALLANDRAS,K.MOREAU,X.ROBERT,M.P.CONFORT,R.MERCERON, JRNL AUTH 2 R.HASER,C.RONFORT,P.GOUET JRNL TITL A CRYSTAL STRUCTURE OF THE CATALYTIC CORE DOMAIN OF AN AVIAN JRNL TITL 2 SARCOMA AND LEUKEMIA VIRUS INTEGRASE SUGGESTS AN ALTERNATE JRNL TITL 3 DIMERIC ASSEMBLY. JRNL REF PLOS ONE V. 6 23032 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21857987 JRNL DOI 10.1371/JOURNAL.PONE.0023032 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : -0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2154 ; 0.029 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2918 ; 2.118 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;38.727 ;21.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;15.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;22.475 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1580 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 1.616 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2145 ; 2.714 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 4.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 773 ; 6.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.281060 REMARK 200 MONOCHROMATOR : SYNCHROTRON BEAM REMARK 200 OPTICS : SYNCHROTRON OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 11.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM ZNCL2, 20% (W/V) PEG 6000, 100 REMARK 280 MM MES, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.97333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.46000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.43333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.48667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 LEU A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 GLY A 145 REMARK 465 ILE A 146 REMARK 465 PRO A 147 REMARK 465 GLY A 148 REMARK 465 ASN A 149 REMARK 465 SER A 150 REMARK 465 GLN A 151 REMARK 465 GLY A 152 REMARK 465 GLY B 50 REMARK 465 SER B 51 REMARK 465 GLY B 52 REMARK 465 ARG B 53 REMARK 465 GLY B 54 REMARK 465 LEU B 55 REMARK 465 GLY B 56 REMARK 465 PRO B 57 REMARK 465 GLY B 145 REMARK 465 ILE B 146 REMARK 465 PRO B 147 REMARK 465 GLY B 148 REMARK 465 ASN B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 SER B 150 OG REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 156 CB VAL A 156 CG2 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 178 -107.00 -126.43 REMARK 500 SER B 86 10.17 58.44 REMARK 500 LYS B 178 -108.44 -126.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 121 OD2 92.5 REMARK 620 3 HOH A 358 O 90.3 177.1 REMARK 620 4 HOH A 359 O 104.6 92.2 86.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 ND1 REMARK 620 2 HOH A 257 O 101.4 REMARK 620 3 HOH A 271 O 110.0 115.3 REMARK 620 4 HIS B 103 ND1 117.5 107.4 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD1 REMARK 620 2 ASP B 121 OD2 88.7 REMARK 620 3 HOH B 268 O 92.4 175.0 REMARK 620 4 HOH B 313 O 107.2 86.5 88.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 3000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2000 DBREF 3O4N A 53 199 UNP Q4ZJZ6 Q4ZJZ6_RSVSR 625 771 DBREF 3O4N B 53 199 UNP Q4ZJZ6 Q4ZJZ6_RSVSR 625 771 SEQADV 3O4N GLY A 50 UNP Q4ZJZ6 EXPRESSION TAG SEQADV 3O4N SER A 51 UNP Q4ZJZ6 EXPRESSION TAG SEQADV 3O4N GLY A 52 UNP Q4ZJZ6 EXPRESSION TAG SEQADV 3O4N GLY B 50 UNP Q4ZJZ6 EXPRESSION TAG SEQADV 3O4N SER B 51 UNP Q4ZJZ6 EXPRESSION TAG SEQADV 3O4N GLY B 52 UNP Q4ZJZ6 EXPRESSION TAG SEQRES 1 A 150 GLY SER GLY ARG GLY LEU GLY PRO LEU GLN ILE TRP GLN SEQRES 2 A 150 THR ASP PHE THR LEU GLU PRO ARG MET ALA PRO ARG SER SEQRES 3 A 150 TRP LEU ALA VAL THR VAL ASP THR ALA SER SER ALA ILE SEQRES 4 A 150 VAL VAL THR GLN HIS GLY ARG VAL THR SER VAL ALA ALA SEQRES 5 A 150 GLN HIS HIS TRP ALA THR ALA ILE ALA VAL LEU GLY ARG SEQRES 6 A 150 PRO LYS ALA ILE LYS THR ASP ASN GLY SER CYS PHE THR SEQRES 7 A 150 SER LYS SER THR ARG GLU TRP LEU ALA ARG TRP GLY ILE SEQRES 8 A 150 ALA HIS THR THR GLY ILE PRO GLY ASN SER GLN GLY GLN SEQRES 9 A 150 ALA MET VAL GLU ARG ALA ASN ARG LEU LEU LYS ASP LYS SEQRES 10 A 150 ILE ARG VAL LEU ALA GLU GLY ASP GLY PHE MET LYS ARG SEQRES 11 A 150 ILE PRO ALA SER LYS GLN GLY GLU LEU LEU ALA LYS ALA SEQRES 12 A 150 MET TYR ALA LEU ASN HIS PHE SEQRES 1 B 150 GLY SER GLY ARG GLY LEU GLY PRO LEU GLN ILE TRP GLN SEQRES 2 B 150 THR ASP PHE THR LEU GLU PRO ARG MET ALA PRO ARG SER SEQRES 3 B 150 TRP LEU ALA VAL THR VAL ASP THR ALA SER SER ALA ILE SEQRES 4 B 150 VAL VAL THR GLN HIS GLY ARG VAL THR SER VAL ALA ALA SEQRES 5 B 150 GLN HIS HIS TRP ALA THR ALA ILE ALA VAL LEU GLY ARG SEQRES 6 B 150 PRO LYS ALA ILE LYS THR ASP ASN GLY SER CYS PHE THR SEQRES 7 B 150 SER LYS SER THR ARG GLU TRP LEU ALA ARG TRP GLY ILE SEQRES 8 B 150 ALA HIS THR THR GLY ILE PRO GLY ASN SER GLN GLY GLN SEQRES 9 B 150 ALA MET VAL GLU ARG ALA ASN ARG LEU LEU LYS ASP LYS SEQRES 10 B 150 ILE ARG VAL LEU ALA GLU GLY ASP GLY PHE MET LYS ARG SEQRES 11 B 150 ILE PRO ALA SER LYS GLN GLY GLU LEU LEU ALA LYS ALA SEQRES 12 B 150 MET TYR ALA LEU ASN HIS PHE HET MES A3000 12 HET ZN A2001 1 HET ZN A2002 1 HET ZN B2000 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM ZN ZINC ION FORMUL 3 MES C6 H13 N O4 S FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *186(H2 O) HELIX 1 1 PRO A 69 ALA A 72 5 4 HELIX 2 2 THR A 97 GLY A 113 1 17 HELIX 3 3 GLY A 123 SER A 128 1 6 HELIX 4 4 SER A 128 TRP A 138 1 11 HELIX 5 5 GLN A 153 ASP A 174 1 22 HELIX 6 6 PRO A 181 ALA A 195 1 15 HELIX 7 7 PRO B 69 ALA B 72 5 4 HELIX 8 8 THR B 97 GLY B 113 1 17 HELIX 9 9 GLY B 123 SER B 128 1 6 HELIX 10 10 SER B 128 TRP B 138 1 11 HELIX 11 11 GLN B 153 ASP B 174 1 22 HELIX 12 12 PRO B 181 HIS B 198 1 18 SHEET 1 A 5 ILE A 88 HIS A 93 0 SHEET 2 A 5 TRP A 76 ASP A 82 -1 N ALA A 78 O THR A 91 SHEET 3 A 5 ILE A 60 LEU A 67 -1 N THR A 66 O LEU A 77 SHEET 4 A 5 ALA A 117 LYS A 119 1 O ALA A 117 N TRP A 61 SHEET 5 A 5 ALA A 141 THR A 143 1 O ALA A 141 N ILE A 118 SHEET 1 B 5 ILE B 88 HIS B 93 0 SHEET 2 B 5 TRP B 76 ASP B 82 -1 N ALA B 78 O THR B 91 SHEET 3 B 5 ILE B 60 LEU B 67 -1 N THR B 66 O LEU B 77 SHEET 4 B 5 ALA B 117 LYS B 119 1 O LYS B 119 N TRP B 61 SHEET 5 B 5 ALA B 141 THR B 143 1 O ALA B 141 N ILE B 118 LINK OD1 ASP A 64 ZN ZN A2001 1555 1555 2.06 LINK ND1 HIS A 103 ZN ZN A2002 1555 1555 2.04 LINK OD2 ASP A 121 ZN ZN A2001 1555 1555 2.18 LINK O HOH A 257 ZN ZN A2002 1555 1555 2.30 LINK O HOH A 271 ZN ZN A2002 1555 1555 2.22 LINK O HOH A 358 ZN ZN A2001 1555 1555 2.09 LINK O HOH A 359 ZN ZN A2001 1555 1555 2.05 LINK ZN ZN A2002 ND1 HIS B 103 1555 1555 2.00 LINK OD1 ASP B 64 ZN ZN B2000 1555 1555 2.10 LINK OD2 ASP B 121 ZN ZN B2000 1555 1555 2.03 LINK O HOH B 268 ZN ZN B2000 1555 1555 2.20 LINK O HOH B 313 ZN ZN B2000 1555 1555 2.12 CISPEP 1 ALA A 72 PRO A 73 0 2.58 CISPEP 2 ALA B 72 PRO B 73 0 1.45 SITE 1 AC1 8 ALA A 190 MET A 193 TYR A 194 PHE A 199 SITE 2 AC1 8 HOH A 369 ARG B 114 ARG B 137 TRP B 138 SITE 1 AC2 5 ASP A 64 ASP A 121 HIS A 198 HOH A 358 SITE 2 AC2 5 HOH A 359 SITE 1 AC3 4 HIS A 103 HOH A 257 HOH A 271 HIS B 103 SITE 1 AC4 5 ASP B 64 ASP B 121 HIS B 198 HOH B 268 SITE 2 AC4 5 HOH B 313 CRYST1 107.500 107.500 50.920 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009302 0.005371 0.000000 0.00000 SCALE2 0.000000 0.010741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019639 0.00000