HEADER OXIDOREDUCTASE 28-JUL-10 3O5A TITLE CRYSTAL STRUCTURE OF PARTIALLY REDUCED PERIPLASMIC NITRATE REDUCTASE TITLE 2 FROM CUPRIAVIDUS NECATOR USING IONIC LIQUIDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC NITRATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAPA; COMPND 5 EC: 1.7.99.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CATALYTIC SUBUNIT; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DIHEME CYTOCHROME C NAPB; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: NAPB; COMPND 12 EC: 1.9.6.1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_COMMON: CUPRIAVIDUS NECATOR; SOURCE 4 ORGANISM_TAXID: 381666; SOURCE 5 STRAIN: H16; SOURCE 6 GENE: PHG211; SOURCE 7 EXPRESSION_SYSTEM: CUPRIAVIDUS NECATOR; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 106590; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HF210; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCM62; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 14 ORGANISM_COMMON: CUPRIAVIDUS NECATOR; SOURCE 15 ORGANISM_TAXID: 381666; SOURCE 16 STRAIN: H16; SOURCE 17 GENE: PHG212; SOURCE 18 EXPRESSION_SYSTEM: CUPRIAVIDUS NECATOR; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 106590; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: HF210; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCM62 KEYWDS OXIDOREDUCTASE, HETERODIMERIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.COELHO,J.TRINCAO,M.J.ROMAO REVDAT 4 06-DEC-23 3O5A 1 REMARK REVDAT 3 01-NOV-23 3O5A 1 REMARK LINK REVDAT 2 07-DEC-11 3O5A 1 JRNL VERSN REVDAT 1 06-APR-11 3O5A 0 JRNL AUTH C.COELHO,P.J.GONZALEZ,J.J.G.MOURA,I.MOURA,J.TRINCAO, JRNL AUTH 2 M.J.ROMAO JRNL TITL THE CRYSTAL STRUCTURE OF CUPRIAVIDUS NECATOR NITRATE JRNL TITL 2 REDUCTASE IN OXIDIZED AND PARTIALLY REDUCED STATES JRNL REF J.MOL.BIOL. V. 408 932 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21419779 JRNL DOI 10.1016/J.JMB.2011.03.016 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 93004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 371 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 248 REMARK 3 SOLVENT ATOMS : 787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7595 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10380 ; 2.310 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 902 ; 8.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 345 ;35.440 ;23.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1183 ;13.800 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1067 ; 0.198 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5854 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4542 ; 1.289 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7251 ; 1.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3053 ; 2.971 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3065 ; 4.383 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 28.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 935.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.2M SODIUM FORMATE, REMARK 280 0.4M [C4MIM]CL-, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1160 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASN A 2 REMARK 465 PHE A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 THR A 10 REMARK 465 GLN B 0 REMARK 465 ASP B 28 REMARK 465 ILE B 29 REMARK 465 ARG B 30 REMARK 465 ARG B 31 REMARK 465 THR B 32 REMARK 465 ARG B 33 REMARK 465 ASN B 34 REMARK 465 TYR B 35 REMARK 465 THR B 36 REMARK 465 ARG B 66 REMARK 465 THR B 67 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 THR B 70 REMARK 465 GLN B 71 REMARK 465 LYS B 124 REMARK 465 ARG B 125 REMARK 465 ARG B 126 REMARK 465 PRO B 127 REMARK 465 GLY B 128 REMARK 465 ALA B 129 REMARK 465 LYS B 130 REMARK 465 GLY B 131 REMARK 465 ALA B 132 REMARK 465 ALA B 133 REMARK 465 LYS B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 THR B 65 OG1 CG2 REMARK 470 ASP B 120 CG OD1 OD2 REMARK 470 LEU B 123 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 152 CB CYS A 152 SG -0.281 REMARK 500 ARG B 83 CZ ARG B 83 NH1 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 221 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET A 240 CG - SD - CE ANGL. DEV. = -17.7 DEGREES REMARK 500 ASP A 301 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 311 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 400 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET A 405 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 LYS A 443 CD - CE - NZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 473 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 542 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 571 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 587 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 622 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 746 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 746 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 -115.98 -107.55 REMARK 500 CYS A 152 -67.20 -131.10 REMARK 500 CYS A 152 -69.67 -133.66 REMARK 500 GLU A 168 158.01 77.47 REMARK 500 ASN A 188 75.61 -105.20 REMARK 500 GLN A 235 -8.40 78.09 REMARK 500 TYR A 274 24.28 -146.38 REMARK 500 THR A 345 -126.92 -134.93 REMARK 500 SER A 386 32.79 -143.45 REMARK 500 THR A 390 -72.69 -99.28 REMARK 500 GLU A 467 -65.63 -129.43 REMARK 500 TRP A 502 -123.87 36.61 REMARK 500 ARG A 571 57.86 -107.71 REMARK 500 HIS A 700 -114.35 48.90 REMARK 500 PHE A 715 82.16 -166.43 REMARK 500 ASP A 781 48.06 -82.42 REMARK 500 ASP B 120 -42.60 -14.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 376 SER A 377 -149.52 REMARK 500 TRP A 632 PRO A 633 -33.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE RESIDUE A 900 WAS ORIGINALLY DEPOSITED AS A ISOLATED SULFUR REMARK 600 ATOM. THE HETEROGEN S IS NOW OBSOLETE IN THE PDB HETGROUP REMARK 600 DICTIONARY. IN THIS ENTRY, IT IS TREATED AS A PART OF MOS A1802. REMARK 600 OTHER SULFURS OF MOLYBDENUM ATOM ARE SUPPLIED FROM SURROUNDING MGDS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1801 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 SF4 A1801 S1 113.6 REMARK 620 3 SF4 A1801 S2 107.7 106.6 REMARK 620 4 SF4 A1801 S3 118.8 103.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1801 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 SF4 A1801 S2 118.5 REMARK 620 3 SF4 A1801 S3 115.7 103.0 REMARK 620 4 SF4 A1801 S4 108.8 102.8 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1801 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 SF4 A1801 S1 114.4 REMARK 620 3 SF4 A1801 S2 109.3 105.6 REMARK 620 4 SF4 A1801 S4 117.1 105.6 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1801 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 SF4 A1801 S1 118.9 REMARK 620 3 SF4 A1801 S3 103.3 102.8 REMARK 620 4 SF4 A1801 S4 122.0 102.5 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MOS A1802 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 152 SG REMARK 620 2 MOS A1802 S 62.7 REMARK 620 3 CYS A 152 SG 59.6 65.5 REMARK 620 4 MGD A1803 S12 128.2 89.0 69.5 REMARK 620 5 MGD A1803 S13 91.5 134.9 69.6 78.9 REMARK 620 6 MGD A1804 S13 132.4 92.7 147.9 87.8 129.5 REMARK 620 7 MGD A1804 S12 81.1 123.3 130.5 145.9 83.9 80.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B1128 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 NE2 REMARK 620 2 HEC B1128 NA 93.2 REMARK 620 3 HEC B1128 NB 93.4 93.4 REMARK 620 4 HEC B1128 NC 86.8 179.2 85.8 REMARK 620 5 HEC B1128 ND 86.4 87.0 179.5 93.7 REMARK 620 6 HIS B 62 NE2 174.1 89.3 91.8 90.8 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B1129 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HEC B1129 NA 92.4 REMARK 620 3 HEC B1129 NB 90.6 94.4 REMARK 620 4 HEC B1129 NC 90.1 177.5 86.1 REMARK 620 5 HEC B1129 ND 89.9 86.7 178.8 92.8 REMARK 620 6 HIS B 102 NE2 179.1 87.8 90.3 89.7 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOS A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGD A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGD A 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 140 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ML1 RELATED DB: PDB REMARK 900 OXIDIZED PERIPLASMIC NITRATE REDUCTASE DBREF 3O5A A 1 802 UNP P39185 NAPA_RALEH 30 831 DBREF 3O5A B 0 134 UNP P39186 NAPB_RALEH 35 169 SEQRES 1 A 802 ALA ASN PHE VAL THR ASP SER GLU VAL THR LYS LEU LYS SEQRES 2 A 802 TRP SER LYS ALA PRO CYS ARG PHE CYS GLY THR GLY CYS SEQRES 3 A 802 GLY VAL THR VAL ALA VAL LYS ASP ASN LYS VAL VAL ALA SEQRES 4 A 802 THR GLN GLY ASP PRO GLN ALA GLU VAL ASN LYS GLY LEU SEQRES 5 A 802 ASN CYS VAL LYS GLY TYR PHE LEU SER LYS ILE MET TYR SEQRES 6 A 802 GLY GLN ASP ARG LEU THR ARG PRO LEU MET ARG MET LYS SEQRES 7 A 802 ASN GLY LYS TYR ASP LYS ASN GLY ASP PHE ALA PRO VAL SEQRES 8 A 802 THR TRP ASP GLN ALA PHE ASP GLU MET GLU ARG GLN PHE SEQRES 9 A 802 LYS ARG VAL LEU LYS GLU LYS GLY PRO THR ALA VAL GLY SEQRES 10 A 802 MET PHE GLY SER GLY GLN TRP THR VAL TRP GLU GLY TYR SEQRES 11 A 802 ALA ALA ALA LYS LEU TYR LYS ALA GLY PHE ARG SER ASN SEQRES 12 A 802 ASN ILE ASP PRO ASN ALA ARG HIS CYS MET ALA SER ALA SEQRES 13 A 802 ALA ALA GLY PHE MET ARG THR PHE GLY MET ASP GLU PRO SEQRES 14 A 802 MET GLY CYS TYR ASP ASP PHE GLU ALA ALA ASP ALA PHE SEQRES 15 A 802 VAL LEU TRP GLY SER ASN MET ALA GLU MET HIS PRO ILE SEQRES 16 A 802 LEU TRP THR ARG VAL THR ASP ARG ARG LEU SER HIS PRO SEQRES 17 A 802 LYS THR ARG VAL VAL VAL LEU SER THR PHE THR HIS ARG SEQRES 18 A 802 CYS PHE ASP LEU ALA ASP ILE GLY ILE ILE PHE LYS PRO SEQRES 19 A 802 GLN THR ASP LEU ALA MET LEU ASN TYR ILE ALA ASN TYR SEQRES 20 A 802 ILE ILE ARG ASN ASN LYS VAL ASN LYS ASP PHE VAL ASN SEQRES 21 A 802 LYS HIS THR VAL PHE LYS GLU GLY VAL THR ASP ILE GLY SEQRES 22 A 802 TYR GLY LEU ARG PRO ASP HIS PRO LEU GLN LYS ALA ALA SEQRES 23 A 802 LYS ASN ALA SER ASP PRO GLY ALA ALA LYS VAL ILE THR SEQRES 24 A 802 PHE ASP GLU PHE ALA LYS PHE VAL SER LYS TYR ASP ALA SEQRES 25 A 802 ASP TYR VAL SER LYS LEU SER ALA VAL PRO LYS ALA LYS SEQRES 26 A 802 LEU ASP GLN LEU ALA GLU LEU TYR ALA ASP PRO ASN ILE SEQRES 27 A 802 LYS VAL MET SER LEU TRP THR MET GLY PHE ASN GLN HIS SEQRES 28 A 802 THR ARG GLY THR TRP ALA ASN ASN MET VAL TYR ASN LEU SEQRES 29 A 802 HIS LEU LEU THR GLY LYS ILE ALA THR PRO GLY ASN SER SEQRES 30 A 802 PRO PHE SER LEU THR GLY GLN PRO SER ALA CYS GLY THR SEQRES 31 A 802 ALA ARG GLU VAL GLY THR PHE SER HIS ARG LEU PRO ALA SEQRES 32 A 802 ASP MET VAL VAL THR ASN PRO LYS HIS ARG GLU GLU ALA SEQRES 33 A 802 GLU ARG ILE TRP LYS LEU PRO PRO GLY THR ILE PRO ASP SEQRES 34 A 802 LYS PRO GLY TYR ASP ALA VAL LEU GLN ASN ARG MET LEU SEQRES 35 A 802 LYS ASP GLY LYS LEU ASN ALA TYR TRP VAL GLN VAL ASN SEQRES 36 A 802 ASN ASN MET GLN ALA ALA ALA ASN LEU MET GLU GLU GLY SEQRES 37 A 802 LEU PRO GLY TYR ARG ASN PRO ALA ASN PHE ILE VAL VAL SEQRES 38 A 802 SER ASP ALA TYR PRO THR VAL THR ALA LEU ALA ALA ASP SEQRES 39 A 802 LEU VAL LEU PRO SER ALA MET TRP VAL GLU LYS GLU GLY SEQRES 40 A 802 ALA TYR GLY ASN ALA GLU ARG ARG THR GLN PHE TRP HIS SEQRES 41 A 802 GLN LEU VAL ASP ALA PRO GLY GLU ALA ARG SER ASP LEU SEQRES 42 A 802 TRP GLN LEU VAL GLU PHE ALA LYS ARG PHE LYS VAL GLU SEQRES 43 A 802 GLU VAL TRP PRO PRO GLU LEU ILE ALA LYS LYS PRO GLU SEQRES 44 A 802 TYR LYS GLY LYS THR LEU TYR ASP VAL LEU TYR ARG ASN SEQRES 45 A 802 GLY GLN VAL ASP LYS PHE PRO LEU LYS ASP VAL ASN ALA SEQRES 46 A 802 GLU TYR HIS ASN ALA GLU ALA LYS ALA PHE GLY PHE TYR SEQRES 47 A 802 LEU GLN LYS GLY LEU PHE GLU GLU TYR ALA THR PHE GLY SEQRES 48 A 802 ARG GLY HIS GLY HIS ASP LEU ALA PRO PHE ASP ALA TYR SEQRES 49 A 802 HIS GLU ALA ARG GLY LEU ARG TRP PRO VAL VAL ASN GLY SEQRES 50 A 802 LYS GLU THR ARG TRP ARG TYR ARG GLU GLY SER ASP PRO SEQRES 51 A 802 TYR VAL LYS ALA GLY THR GLY PHE GLN PHE TYR GLY ASN SEQRES 52 A 802 PRO ASP GLY LYS ALA VAL ILE PHE ALA LEU PRO TYR GLU SEQRES 53 A 802 PRO PRO ALA GLU SER PRO ASP LYS GLU TYR PRO TYR TRP SEQRES 54 A 802 LEU VAL THR GLY ARG VAL LEU GLU HIS TRP HIS SER GLY SEQRES 55 A 802 SER MET THR ARG ARG VAL PRO GLU LEU TYR ARG SER PHE SEQRES 56 A 802 PRO ASN ALA VAL VAL PHE MET HIS PRO GLU ASP ALA LYS SEQRES 57 A 802 ALA LEU GLY LEU ARG ARG GLY VAL GLU VAL GLU VAL VAL SEQRES 58 A 802 SER ARG ARG GLY ARG MET ARG SER ARG ILE GLU THR ARG SEQRES 59 A 802 GLY ARG ASP ALA PRO PRO ARG GLY LEU VAL PHE VAL PRO SEQRES 60 A 802 TRP PHE ASP ALA SER GLN LEU ILE ASN LYS VAL THR LEU SEQRES 61 A 802 ASP ALA THR OCS PRO ILE SER LEU GLN THR ASP PHE LYS SEQRES 62 A 802 LYS CYS ALA VAL LYS ILE VAL LYS VAL SEQRES 1 B 135 GLN GLY LEU VAL ASP ALA MET ARG GLY PRO THR ALA ILE SEQRES 2 B 135 ALA ASN GLU PRO ARG ALA PRO LEU LEU TYR PRO THR GLU SEQRES 3 B 135 ASN LYS ASP ILE ARG ARG THR ARG ASN TYR THR MET GLN SEQRES 4 B 135 PRO PRO THR ILE PRO HIS LYS ILE ASP GLY TYR GLN LEU SEQRES 5 B 135 ASP LYS ASP PHE ASN ARG CYS MET PHE CYS HIS ALA ARG SEQRES 6 B 135 THR ARG THR GLU GLU THR GLN ALA ILE PRO VAL SER ILE SEQRES 7 B 135 THR HIS TYR MET ASP ARG ASP ASN ASN VAL LEU ALA ASP SEQRES 8 B 135 VAL SER PRO ARG ARG TYR PHE CYS THR GLN CYS HIS VAL SEQRES 9 B 135 PRO GLN ALA ASP THR LYS PRO LEU ILE GLY ASN ASN PHE SEQRES 10 B 135 VAL ASP VAL ASP THR ILE LEU LYS ARG ARG PRO GLY ALA SEQRES 11 B 135 LYS GLY ALA ALA LYS MODRES 3O5A OCS A 784 CYS CYSTEINESULFONIC ACID HET OCS A 784 9 HET SF4 A1801 8 HET MOS A1802 2 HET MGD A1803 47 HET MGD A1804 47 HET FMT A 803 3 HET FMT A 804 3 HET FMT A 805 3 HET FMT A 806 3 HET FMT A 807 3 HET FMT A 808 3 HET FMT A 809 3 HET FMT A 810 3 HET FMT A 811 3 HET FMT A 812 3 HET FMT A 813 3 HET FMT A 814 3 HET FMT A 815 3 HET CL A 816 1 HET HEC B1128 43 HET HEC B1129 43 HET FMT B 135 3 HET FMT B 136 3 HET FMT B 137 3 HET FMT B 138 3 HET FMT B 139 3 HET FMT B 140 3 HETNAM OCS CYSTEINESULFONIC ACID HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MOS DIOXOTHIOMOLYBDENUM(VI) ION HETNAM MGD 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8- HETNAM 2 MGD OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE HETNAM 3 MGD DINUCLEOTIDE HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION HETNAM HEC HEME C HETSYN MGD MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE FORMUL 1 OCS C3 H7 N O5 S FORMUL 3 SF4 FE4 S4 FORMUL 4 MOS H MO O2 S FORMUL 5 MGD 2(C20 H26 N10 O13 P2 S2) FORMUL 7 FMT 19(C H2 O2) FORMUL 20 CL CL 1- FORMUL 21 HEC 2(C34 H34 FE N4 O4) FORMUL 29 HOH *787(H2 O) HELIX 1 1 CYS A 54 PHE A 59 1 6 HELIX 2 2 LEU A 60 ILE A 63 5 4 HELIX 3 3 THR A 92 GLY A 112 1 21 HELIX 4 4 THR A 125 ALA A 138 1 14 HELIX 5 5 ALA A 149 CYS A 152 5 4 HELIX 6 6 MET A 153 GLY A 165 1 13 HELIX 7 7 CYS A 172 ALA A 178 5 7 HELIX 8 8 ASN A 188 HIS A 193 1 6 HELIX 9 9 HIS A 193 HIS A 207 1 15 HELIX 10 10 HIS A 220 LEU A 225 5 6 HELIX 11 11 THR A 236 ASN A 251 1 16 HELIX 12 12 ASN A 255 HIS A 262 1 8 HELIX 13 13 HIS A 280 ALA A 286 1 7 HELIX 14 14 THR A 299 LYS A 309 1 11 HELIX 15 15 ASP A 311 ALA A 320 1 10 HELIX 16 16 PRO A 322 ASP A 335 1 14 HELIX 17 17 THR A 345 GLN A 350 1 6 HELIX 18 18 ARG A 353 GLY A 369 1 17 HELIX 19 19 THR A 390 GLY A 395 1 6 HELIX 20 20 ASN A 409 TRP A 420 1 12 HELIX 21 21 ASP A 434 ASP A 444 1 11 HELIX 22 22 ASN A 456 ALA A 461 1 6 HELIX 23 23 GLU A 467 ASN A 474 1 8 HELIX 24 24 THR A 487 ALA A 492 1 6 HELIX 25 25 MET A 501 LYS A 505 5 5 HELIX 26 26 ASP A 532 LYS A 541 1 10 HELIX 27 27 LYS A 544 TRP A 549 1 6 HELIX 28 28 PRO A 550 LYS A 557 1 8 HELIX 29 29 PRO A 558 LYS A 561 5 4 HELIX 30 30 THR A 564 TYR A 570 1 7 HELIX 31 31 PRO A 579 VAL A 583 5 5 HELIX 32 32 ASN A 589 GLY A 596 1 8 HELIX 33 33 TYR A 598 ARG A 612 1 15 HELIX 34 34 PRO A 620 ALA A 627 1 8 HELIX 35 35 MET A 704 ARG A 707 5 4 HELIX 36 36 VAL A 708 PHE A 715 1 8 HELIX 37 37 HIS A 723 GLY A 731 1 9 HELIX 38 38 LEU A 774 VAL A 778 5 5 HELIX 39 39 ARG B 57 ALA B 63 1 7 HELIX 40 40 SER B 76 MET B 81 5 6 HELIX 41 41 SER B 92 TYR B 96 5 5 HELIX 42 42 PHE B 97 CYS B 101 5 5 HELIX 43 43 ASP B 118 ILE B 122 5 5 SHEET 1 A 3 LYS A 13 PRO A 18 0 SHEET 2 A 3 GLY A 27 LYS A 33 -1 O VAL A 28 N ALA A 17 SHEET 3 A 3 LYS A 36 GLY A 42 -1 O ALA A 39 N ALA A 31 SHEET 1 B 7 LYS A 81 TYR A 82 0 SHEET 2 B 7 LEU A 74 LYS A 78 -1 N LYS A 78 O LYS A 81 SHEET 3 B 7 LEU A 495 ALA A 500 -1 O VAL A 496 N LEU A 74 SHEET 4 B 7 PHE A 478 ASP A 483 1 N VAL A 481 O LEU A 497 SHEET 5 B 7 ALA A 449 GLN A 453 1 N TYR A 450 O VAL A 480 SHEET 6 B 7 VAL A 116 GLY A 120 1 N PHE A 119 O GLN A 453 SHEET 7 B 7 ILE A 145 PRO A 147 1 O ASP A 146 N GLY A 120 SHEET 1 C 4 ASP A 87 PRO A 90 0 SHEET 2 C 4 LEU A 74 LYS A 78 -1 N MET A 75 O ALA A 89 SHEET 3 C 4 LEU A 495 ALA A 500 -1 O VAL A 496 N LEU A 74 SHEET 4 C 4 ARG A 530 SER A 531 1 O ARG A 530 N PRO A 498 SHEET 1 D 5 ILE A 228 ILE A 231 0 SHEET 2 D 5 ARG A 211 SER A 216 1 N VAL A 214 O ILE A 230 SHEET 3 D 5 ALA A 181 TRP A 185 1 N PHE A 182 O VAL A 213 SHEET 4 D 5 VAL A 340 TRP A 344 1 O LEU A 343 N VAL A 183 SHEET 5 D 5 SER A 377 SER A 380 1 O PHE A 379 N SER A 342 SHEET 1 E 3 ALA A 295 ILE A 298 0 SHEET 2 E 3 THR A 263 GLY A 268 -1 N GLU A 267 O LYS A 296 SHEET 3 E 3 ALA A 668 ALA A 672 1 O ILE A 670 N VAL A 264 SHEET 1 F 3 GLY A 507 GLY A 510 0 SHEET 2 F 3 ARG A 515 TRP A 519 -1 O GLN A 517 N TYR A 509 SHEET 3 F 3 LEU A 630 ARG A 631 -1 O LEU A 630 N THR A 516 SHEET 1 G 7 TYR A 688 GLY A 693 0 SHEET 2 G 7 LEU A 763 PRO A 767 1 O VAL A 764 N TRP A 689 SHEET 3 G 7 VAL A 719 PHE A 721 -1 N PHE A 721 O PHE A 765 SHEET 4 G 7 ARG A 746 GLU A 752 1 O ARG A 750 N VAL A 720 SHEET 5 G 7 GLU A 737 VAL A 741 -1 N VAL A 738 O SER A 749 SHEET 6 G 7 ALA A 796 LYS A 801 -1 O VAL A 800 N GLU A 739 SHEET 7 G 7 TYR A 688 GLY A 693 -1 N TYR A 688 O VAL A 797 SHEET 1 H 2 LEU B 51 ASP B 52 0 SHEET 2 H 2 PHE B 55 ASN B 56 -1 O PHE B 55 N ASP B 52 LINK C THR A 783 N OCS A 784 1555 1555 1.33 LINK C OCS A 784 N PRO A 785 1555 1555 1.34 LINK SG CYS B 58 CAB HEC B1128 1555 1555 1.92 LINK SG CYS B 61 CAC HEC B1128 1555 1555 2.18 LINK SG CYS B 98 CAB HEC B1129 1555 1555 1.74 LINK SG CYS B 101 CAC HEC B1129 1555 1555 2.18 LINK SG CYS A 19 FE4 SF4 A1801 1555 1555 2.38 LINK SG CYS A 22 FE1 SF4 A1801 1555 1555 2.34 LINK SG CYS A 26 FE3 SF4 A1801 1555 1555 2.31 LINK SG CYS A 54 FE2 SF4 A1801 1555 1555 2.36 LINK SG ACYS A 152 MO MOS A1802 1555 1555 2.48 LINK SG BCYS A 152 MO MOS A1802 1555 1555 2.53 LINK MO MOS A1802 S12 MGD A1803 1555 1555 2.37 LINK MO MOS A1802 S13 MGD A1803 1555 1555 2.38 LINK MO MOS A1802 S13 MGD A1804 1555 1555 2.30 LINK MO MOS A1802 S12 MGD A1804 1555 1555 2.39 LINK NE2 HIS B 44 FE HEC B1128 1555 1555 2.14 LINK NE2 HIS B 62 FE HEC B1128 1555 1555 1.97 LINK NE2 HIS B 79 FE HEC B1129 1555 1555 1.98 LINK NE2 HIS B 102 FE HEC B1129 1555 1555 2.01 SITE 1 AC1 9 CYS A 19 PHE A 21 CYS A 22 GLY A 25 SITE 2 AC1 9 CYS A 26 ASN A 53 CYS A 54 GLY A 57 SITE 3 AC1 9 PRO A 194 SITE 1 AC2 4 CYS A 152 GLN A 384 MGD A1803 MGD A1804 SITE 1 AC3 35 ARG A 20 GLN A 123 ASN A 148 CYS A 152 SITE 2 AC3 35 GLN A 350 GLN A 384 VAL A 454 ASN A 455 SITE 3 AC3 35 ASN A 456 ASN A 457 ALA A 460 SER A 482 SITE 4 AC3 35 ASP A 483 ALA A 484 THR A 487 SER A 499 SITE 5 AC3 35 ALA A 500 MET A 501 LYS A 505 ASP A 532 SITE 6 AC3 35 THR A 692 ARG A 694 TRP A 699 HIS A 700 SITE 7 AC3 35 SER A 701 SER A 703 TRP A 768 ASN A 776 SITE 8 AC3 35 PHE A 792 LYS A 793 HOH A 820 HOH A 826 SITE 9 AC3 35 HOH A 860 MOS A1802 MGD A1804 SITE 1 AC4 37 CYS A 22 LYS A 56 CYS A 152 TRP A 185 SITE 2 AC4 37 GLY A 186 ASN A 188 GLU A 191 MET A 192 SITE 3 AC4 37 SER A 216 THR A 217 PHE A 218 HIS A 220 SITE 4 AC4 37 PHE A 232 GLN A 235 ASP A 237 THR A 345 SITE 5 AC4 37 MET A 346 GLY A 347 PHE A 348 GLY A 383 SITE 6 AC4 37 GLN A 384 GLY A 693 ARG A 694 VAL A 695 SITE 7 AC4 37 LEU A 696 HIS A 698 TRP A 699 HIS A 700 SITE 8 AC4 37 LYS A 793 LYS A 794 HOH A 871 HOH A 888 SITE 9 AC4 37 HOH A 894 HOH A 940 HOH A1030 MOS A1802 SITE 10 AC4 37 MGD A1803 SITE 1 AC5 5 PHE A 397 HIS A 399 ARG A 400 HOH A1090 SITE 2 AC5 5 HOH A1200 SITE 1 AC6 6 LEU A 241 ASN A 242 ALA A 245 MET A 360 SITE 2 AC6 6 ASN A 363 LEU A 364 SITE 1 AC7 7 SER A 15 LYS A 16 HIS A 520 TYR A 587 SITE 2 AC7 7 FMT A 815 HOH A 883 HOH A1216 SITE 1 AC8 5 ARG A 150 HIS A 399 ILE A 786 HOH A1279 SITE 2 AC8 5 HOH A1297 SITE 1 AC9 8 ASP A 167 GLU A 168 ARG A 392 GLU A 393 SITE 2 AC9 8 ASP A 404 HIS A 616 TRP A 632 HOH A 817 SITE 1 BC1 1 ARG A 734 SITE 1 BC2 3 ALA A 627 ARG A 628 HOH A1361 SITE 1 BC3 5 GLY A 229 ILE A 230 ILE A 231 LYS A 325 SITE 2 BC3 5 HOH A1126 SITE 1 BC4 2 ARG A 203 HOH A1322 SITE 1 BC5 3 ARG A 733 ARG A 734 HOH A1408 SITE 1 BC6 5 GLY A 527 GLU A 528 ALA A 529 ARG A 530 SITE 2 BC6 5 HOH A 960 SITE 1 BC7 2 GLU A 626 FMT A 805 SITE 1 BC8 4 SER A 772 LEU A 774 LYS A 777 ARG B 7 SITE 1 BC9 18 PRO B 40 THR B 41 ILE B 42 PRO B 43 SITE 2 BC9 18 HIS B 44 ILE B 46 TYR B 49 ARG B 57 SITE 3 BC9 18 CYS B 58 CYS B 61 HIS B 62 ALA B 72 SITE 4 BC9 18 ILE B 73 CYS B 98 HIS B 102 FMT B 140 SITE 5 BC9 18 HOH B 355 HOH B 667 SITE 1 CC1 19 ASN A 53 TYR A 58 GLN B 38 PRO B 39 SITE 2 CC1 19 PRO B 40 ILE B 73 VAL B 75 SER B 76 SITE 3 CC1 19 THR B 78 HIS B 79 ARG B 95 PHE B 97 SITE 4 CC1 19 CYS B 98 CYS B 101 HIS B 102 HOH B 162 SITE 5 CC1 19 HOH B 409 HOH B 568 HOH B 667 SITE 1 CC2 4 GLY B 48 TYR B 49 GLN B 50 ARG B 57 SITE 1 CC3 6 LYS A 109 ARG A 746 ALA B 13 ASN B 14 SITE 2 CC3 6 GLU B 15 HOH B 144 SITE 1 CC4 2 GLY B 113 ASN B 114 SITE 1 CC5 3 LEU B 2 VAL B 3 HOH B 767 SITE 1 CC6 7 LEU A 491 VAL B 3 ASP B 4 ARG B 7 SITE 2 CC6 7 GLY B 8 HOH B 684 HOH B 710 SITE 1 CC7 3 HIS B 44 TYR B 49 HEC B1128 CRYST1 119.400 71.410 128.410 90.00 121.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008375 0.000000 0.005040 0.00000 SCALE2 0.000000 0.014004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009089 0.00000