HEADER PROTEIN BINDING 29-JUL-10 3O6P TITLE CRYSTAL STRUCTURE OF PEPTIDE ABC TRANSPORTER, PEPTIDE-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE ABC TRANSPORTER, PEPTIDE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 306-526; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 226185; SOURCE 5 STRAIN: V583; SOURCE 6 GENE: EF_0907; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, ABC TRANSPORTER, PROTEIN KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.BIGELOW,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3O6P 1 REMARK REVDAT 1 22-SEP-10 3O6P 0 JRNL AUTH C.CHANG,L.BIGELOW,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PEPTIDE ABC TRANSPORTER, JRNL TITL 2 PEPTIDE-BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 26442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2018 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2752 ; 1.283 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 5.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;39.004 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;11.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1617 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1281 ; 1.329 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2080 ; 2.280 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 3.325 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 672 ; 5.149 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2018 ; 1.506 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0590 18.2157 12.3793 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0102 REMARK 3 T33: 0.0307 T12: 0.0002 REMARK 3 T13: -0.0009 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0225 L22: 0.0414 REMARK 3 L33: 0.0660 L12: -0.0101 REMARK 3 L13: -0.0040 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0008 S13: -0.0004 REMARK 3 S21: 0.0017 S22: 0.0023 S23: 0.0005 REMARK 3 S31: 0.0015 S32: 0.0011 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5074 26.1634 13.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.0222 REMARK 3 T33: 0.0402 T12: 0.0093 REMARK 3 T13: 0.0067 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1175 L22: 2.4078 REMARK 3 L33: 1.3526 L12: 0.4202 REMARK 3 L13: 0.2860 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0262 S13: 0.0339 REMARK 3 S21: 0.0431 S22: -0.0007 S23: 0.2064 REMARK 3 S31: -0.0825 S32: -0.1471 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3524 15.7206 11.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.0098 REMARK 3 T33: 0.0307 T12: -0.0001 REMARK 3 T13: -0.0002 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0287 L22: 0.0923 REMARK 3 L33: 0.0490 L12: 0.0190 REMARK 3 L13: 0.0098 L23: 0.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0007 S13: -0.0015 REMARK 3 S21: 0.0016 S22: 0.0009 S23: -0.0066 REMARK 3 S31: 0.0012 S32: 0.0029 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 457 A 516 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2562 32.8701 3.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0052 REMARK 3 T33: 0.0321 T12: -0.0004 REMARK 3 T13: -0.0006 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.8715 L22: 0.3947 REMARK 3 L33: 0.2088 L12: -0.1240 REMARK 3 L13: -0.0554 L23: -0.2702 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0007 S13: 0.0819 REMARK 3 S21: 0.0410 S22: 0.0078 S23: -0.0038 REMARK 3 S31: -0.0275 S32: -0.0051 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 517 A 526 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7654 22.8738 16.2313 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.0083 REMARK 3 T33: 0.0317 T12: 0.0017 REMARK 3 T13: -0.0001 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0465 L22: 0.1146 REMARK 3 L33: 0.7975 L12: 0.0608 REMARK 3 L13: -0.1246 L23: -0.0388 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0038 S13: -0.0018 REMARK 3 S21: 0.0065 S22: -0.0080 S23: 0.0013 REMARK 3 S31: -0.0309 S32: 0.0086 S33: -0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3O6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 0.1M IMIDAZOLE, 35% REMARK 280 2-PROPANOL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.36650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.74900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.82650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.74900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.36650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.82650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 298 REMARK 465 ASN A 299 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 313 CG CD OE1 OE2 REMARK 480 LYS A 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 26 O HOH A 140 2.07 REMARK 500 OE1 GLU A 483 O HOH A 226 2.15 REMARK 500 O HOH A 26 O HOH A 113 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 338 -65.63 -94.28 REMARK 500 ASP A 376 103.60 -163.20 REMARK 500 ALA A 459 48.40 -71.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 420 O REMARK 620 2 GLN A 420 O 4.1 REMARK 620 3 HOH A 78 O 157.5 161.2 REMARK 620 4 LEU A 423 O 95.5 91.6 99.8 REMARK 620 5 HOH A 228 O 81.1 85.2 80.4 167.3 REMARK 620 6 HOH A 21 O 74.0 75.0 91.4 83.5 83.8 REMARK 620 7 VAL A 426 O 103.7 102.4 91.8 93.5 99.1 176.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62863.1 RELATED DB: TARGETDB DBREF 3O6P A 306 526 UNP Q837D6 Q837D6_ENTFA 306 526 SEQADV 3O6P SER A 298 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P ASN A 299 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P ALA A 300 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P ALA A 301 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P SER A 302 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P THR A 303 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P GLN A 304 UNP Q837D6 EXPRESSION TAG SEQADV 3O6P TYR A 305 UNP Q837D6 EXPRESSION TAG SEQRES 1 A 229 SER ASN ALA ALA SER THR GLN TYR MSE GLU LEU ASN GLN SEQRES 2 A 229 ARG ASP GLU LYS SER PRO PHE ARG ASN ALA ASN LEU ARG SEQRES 3 A 229 LYS ALA ILE SER TYR SER ILE ASP ARG LYS ALA LEU VAL SEQRES 4 A 229 GLU SER ILE LEU GLY ASP GLY SER ILE GLU PRO ASN GLY SEQRES 5 A 229 LEU VAL PRO ALA ASP MSE ALA LYS ASP PRO SER GLY GLY SEQRES 6 A 229 LYS ASP PHE ALA LYS GLU ALA GLY SER GLN ILE GLU TYR SEQRES 7 A 229 ASP THR LYS LYS ALA LYS GLU TYR TRP GLU LYS ALA LYS SEQRES 8 A 229 LYS GLU LEU GLY ILE SER THR LEU THR MSE ASP ILE LEU SEQRES 9 A 229 SER SER ASP ALA ASP SER SER LYS LYS THR VAL GLU PHE SEQRES 10 A 229 VAL GLN GLY SER ILE GLN ASP ALA LEU ASP GLY VAL LYS SEQRES 11 A 229 VAL THR VAL SER PRO VAL PRO PHE SER VAL ARG LEU ASP SEQRES 12 A 229 ARG SER ASN LYS GLY ASP PHE ASP ALA VAL ILE GLY GLY SEQRES 13 A 229 TRP SER ALA ASP TYR ALA ASP PRO SER SER PHE LEU ASP SEQRES 14 A 229 LEU PHE ALA SER ASP ASN SER TYR ASN ARG GLY ARG TYR SEQRES 15 A 229 ASN ASN ALA GLU PHE ASP LYS PHE VAL LYS ALA ALA SER SEQRES 16 A 229 SER ALA ASP ALA THR ASP PRO GLU LYS ARG TRP ASP ASP SEQRES 17 A 229 MSE LEU ASN ALA GLU LYS THR ILE MSE GLY ASP MSE GLY SEQRES 18 A 229 VAL VAL PRO LEU PHE GLN LYS SER MODRES 3O6P MSE A 306 MET SELENOMETHIONINE MODRES 3O6P MSE A 355 MET SELENOMETHIONINE MODRES 3O6P MSE A 398 MET SELENOMETHIONINE MODRES 3O6P MSE A 506 MET SELENOMETHIONINE MODRES 3O6P MSE A 514 MET SELENOMETHIONINE MODRES 3O6P MSE A 517 MET SELENOMETHIONINE HET MSE A 306 8 HET MSE A 355 8 HET MSE A 398 8 HET MSE A 506 8 HET MSE A 514 8 HET MSE A 517 8 HET NA A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *305(H2 O) HELIX 1 1 SER A 315 ARG A 318 5 4 HELIX 2 2 ASN A 319 SER A 329 1 11 HELIX 3 3 ASP A 331 SER A 338 1 8 HELIX 4 4 ASP A 364 GLY A 370 1 7 HELIX 5 5 ASP A 376 GLY A 392 1 17 HELIX 6 6 ALA A 405 LEU A 423 1 19 HELIX 7 7 PRO A 434 GLY A 445 1 12 HELIX 8 8 PRO A 461 ASP A 466 1 6 HELIX 9 9 LEU A 467 ALA A 469 5 3 HELIX 10 10 ASN A 481 SER A 493 1 13 HELIX 11 11 ASP A 498 ASP A 516 1 19 SHEET 1 A 5 VAL A 426 VAL A 433 0 SHEET 2 A 5 LEU A 396 SER A 403 1 N ILE A 400 O SER A 431 SHEET 3 A 5 ALA A 449 SER A 455 1 O ALA A 449 N LEU A 401 SHEET 4 A 5 SER A 302 LEU A 308 -1 N GLU A 307 O VAL A 450 SHEET 5 A 5 VAL A 520 LYS A 525 -1 O LEU A 522 N GLN A 304 LINK C TYR A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N GLU A 307 1555 1555 1.33 LINK C ASP A 354 N MSE A 355 1555 1555 1.33 LINK C MSE A 355 N ALA A 356 1555 1555 1.33 LINK C THR A 397 N MSE A 398 1555 1555 1.33 LINK C MSE A 398 N ASP A 399 1555 1555 1.33 LINK C ASP A 505 N MSE A 506 1555 1555 1.33 LINK C MSE A 506 N LEU A 507 1555 1555 1.34 LINK C ILE A 513 N MSE A 514 1555 1555 1.34 LINK C MSE A 514 N GLY A 515 1555 1555 1.34 LINK C ASP A 516 N MSE A 517 1555 1555 1.34 LINK C MSE A 517 N GLY A 518 1555 1555 1.33 LINK O BGLN A 420 NA NA A 601 1555 1555 2.27 LINK O AGLN A 420 NA NA A 601 1555 1555 2.28 LINK NA NA A 601 O HOH A 78 1555 1555 2.39 LINK O LEU A 423 NA NA A 601 1555 1555 2.48 LINK NA NA A 601 O HOH A 228 1555 1555 2.52 LINK NA NA A 601 O HOH A 21 1555 1555 2.55 LINK O VAL A 426 NA NA A 601 1555 1555 2.66 SITE 1 AC1 6 HOH A 21 HOH A 78 HOH A 228 GLN A 420 SITE 2 AC1 6 LEU A 423 VAL A 426 CRYST1 50.733 53.653 79.498 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012579 0.00000