HEADER TRANSFERASE 29-JUL-10 3O6W TITLE CRYSTAL STRUCTURE OF MONOMERIC KLHXK1 IN CRYSTAL FORM VIII (OPEN TITLE 2 STATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 28985; SOURCE 5 STRAIN: CBS2359/152; SOURCE 6 GENE: KLLA0D11352G, RAG5; SOURCE 7 EXPRESSION_SYSTEM: KLUYVEROMYCES LACTIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 28985; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JA6-DELTA-RAG5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PTS32X; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PTSRAG5 KEYWDS RNASEH-LIKE FOLD, HEXOKINASE, GLYCOLYSIS, GLUCOSE REPRESSION, ATP KEYWDS 2 BINDING, MIG1 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.B.KUETTNER,K.KETTNER,A.KEIM,T.M.KRIEGEL,N.STRATER REVDAT 4 06-SEP-23 3O6W 1 REMARK REVDAT 3 08-NOV-17 3O6W 1 REMARK REVDAT 2 29-DEC-10 3O6W 1 JRNL REVDAT 1 13-OCT-10 3O6W 0 JRNL AUTH E.B.KUETTNER,K.KETTNER,A.KEIM,D.I.SVERGUN,D.VOLKE,D.SINGER, JRNL AUTH 2 R.HOFFMANN,E.C.MULLER,A.OTTO,T.M.KRIEGEL,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF HEXOKINASE KLHXK1 OF KLUYVEROMYCES JRNL TITL 2 LACTIS: A MOLECULAR BASIS FOR UNDERSTANDING THE CONTROL OF JRNL TITL 3 YEAST HEXOKINASE FUNCTIONS VIA COVALENT MODIFICATION AND JRNL TITL 4 OLIGOMERIZATION. JRNL REF J.BIOL.CHEM. V. 285 41019 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20943665 JRNL DOI 10.1074/JBC.M110.185850 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.B.KUETTNER,T.M.KRIEGEL,A.KEIM,M.NAUMANN,N.STRATER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 HEXOKINASE KLHXK1 FROM KLUYVEROMYCES LACTIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 430 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17565189 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 170225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.597 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7513 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10168 ; 1.409 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 933 ; 5.540 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 333 ;35.274 ;25.315 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1341 ;11.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1136 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5603 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4633 ; 1.272 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7510 ; 2.120 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2880 ; 3.548 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2655 ; 5.859 ; 9.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 76 REMARK 3 RESIDUE RANGE : A 210 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1899 5.3667 17.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0021 REMARK 3 T33: 0.0535 T12: 0.0008 REMARK 3 T13: 0.0098 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6001 L22: 0.7259 REMARK 3 L33: 2.1071 L12: 0.0983 REMARK 3 L13: 0.2875 L23: 0.2821 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: -0.0134 S13: -0.0210 REMARK 3 S21: 0.0044 S22: -0.0207 S23: -0.0043 REMARK 3 S31: -0.0339 S32: -0.0294 S33: -0.0231 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 209 REMARK 3 RESIDUE RANGE : A 457 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0435 -11.3529 -4.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0738 REMARK 3 T33: 0.0776 T12: 0.0065 REMARK 3 T13: -0.0053 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.1569 L22: 1.6028 REMARK 3 L33: 1.5464 L12: 0.0621 REMARK 3 L13: 0.0844 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0193 S13: -0.1784 REMARK 3 S21: 0.0923 S22: -0.0278 S23: -0.1913 REMARK 3 S31: 0.0997 S32: 0.1640 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 76 REMARK 3 RESIDUE RANGE : B 210 B 456 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3094 -15.5909 -58.4430 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0582 REMARK 3 T33: 0.0685 T12: 0.0037 REMARK 3 T13: -0.0109 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.0914 L22: 1.0276 REMARK 3 L33: 2.4654 L12: 0.1223 REMARK 3 L13: 0.0094 L23: 0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0954 S13: 0.0262 REMARK 3 S21: -0.2454 S22: 0.0037 S23: 0.0810 REMARK 3 S31: 0.0150 S32: 0.1134 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 209 REMARK 3 RESIDUE RANGE : B 457 B 485 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9439 -10.8974 -33.4426 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: 0.0643 REMARK 3 T33: 0.0373 T12: -0.0260 REMARK 3 T13: 0.0033 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.4136 L22: 1.6986 REMARK 3 L33: 0.9790 L12: 0.2250 REMARK 3 L13: -0.2630 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.0763 S13: 0.1481 REMARK 3 S21: -0.0924 S22: 0.0865 S23: 0.1507 REMARK 3 S31: -0.0410 S32: -0.0120 S33: -0.0738 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FULL B FACTORS AND ANISO RECORDS WERE COMPUTED BY REMARK 3 CCP4 PROGRAMM TLSANL REMARK 4 REMARK 4 3O6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : 1ST MIRROR: SILICON, ACTIVE REMARK 200 SURFACE 50 NM RH-COATED; 2ND REMARK 200 MIRROR: GLAS, ACTIVE SURFACE 50 REMARK 200 NM RH-COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 171952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03100 REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3O08 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MICROL RESERVOIR + 1MICROL PROTEIN, REMARK 280 RESERVOIR: 2.4M DI-AMMONIA PHOSPHATE, 0.1M CHES PH 9.6, PROTEIN: REMARK 280 10MG/ML KLHXK1, 10MM TRIS PH 7.4, 1MM EDTA, 1MM DTT, 0.5MM PMSF, REMARK 280 1MM XYLOSE, 1MM ATP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.79500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 ASP A 18 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 GLY B 5 REMARK 465 PRO B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 MET B 16 REMARK 465 ALA B 17 REMARK 465 ASP B 18 REMARK 465 VAL B 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 92 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 102 57.82 -140.22 REMARK 500 SER A 157 52.11 -90.62 REMARK 500 ASN A 166 54.30 -91.19 REMARK 500 ASP A 178 69.22 -157.03 REMARK 500 VAL A 278 -33.06 -139.62 REMARK 500 SER B 157 49.74 -91.21 REMARK 500 ASN B 166 54.79 -90.90 REMARK 500 ASP B 178 69.65 -152.20 REMARK 500 ASP B 241 -162.21 -100.24 REMARK 500 VAL B 278 -30.86 -138.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 490 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O08 RELATED DB: PDB REMARK 900 CRYSTAL FORM I OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O1B RELATED DB: PDB REMARK 900 CRYSTAL FORM II OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O1W RELATED DB: PDB REMARK 900 CRYSTAL FORM III OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O4W RELATED DB: PDB REMARK 900 CRYSTAL FORM IV OF KLHXK1 (DIMER) REMARK 900 RELATED ID: 3O5B RELATED DB: PDB REMARK 900 CRYSTAL FORM VII OF KLHXK1 (DIMER) WITH GLUCOSE BOUND REMARK 900 RELATED ID: 3O80 RELATED DB: PDB REMARK 900 CRYSTAL FORM IX OF KLHXK1 (MONOMER) REMARK 900 RELATED ID: 3O8M RELATED DB: PDB REMARK 900 CRYSTAL FORM XI OF KLHXK1 (MONONER) WITH GLUCOSE BOUND DBREF 3O6W A 1 485 UNP P33284 HXK_KLULA 1 485 DBREF 3O6W B 1 485 UNP P33284 HXK_KLULA 1 485 SEQRES 1 A 485 MET VAL ARG LEU GLY PRO LYS LYS PRO PRO ALA ARG LYS SEQRES 2 A 485 GLY SER MET ALA ASP VAL PRO ALA ASN LEU MET GLU GLN SEQRES 3 A 485 ILE HIS GLY LEU GLU THR LEU PHE THR VAL SER SER GLU SEQRES 4 A 485 LYS MET ARG SER ILE VAL LYS HIS PHE ILE SER GLU LEU SEQRES 5 A 485 ASP LYS GLY LEU SER LYS LYS GLY GLY ASN ILE PRO MET SEQRES 6 A 485 ILE PRO GLY TRP VAL VAL GLU TYR PRO THR GLY LYS GLU SEQRES 7 A 485 THR GLY ASP PHE LEU ALA LEU ASP LEU GLY GLY THR ASN SEQRES 8 A 485 LEU ARG VAL VAL LEU VAL LYS LEU GLY GLY ASN HIS ASP SEQRES 9 A 485 PHE ASP THR THR GLN ASN LYS TYR ARG LEU PRO ASP HIS SEQRES 10 A 485 LEU ARG THR GLY THR SER GLU GLN LEU TRP SER PHE ILE SEQRES 11 A 485 ALA LYS CYS LEU LYS GLU PHE VAL ASP GLU TRP TYR PRO SEQRES 12 A 485 ASP GLY VAL SER GLU PRO LEU PRO LEU GLY PHE THR PHE SEQRES 13 A 485 SER TYR PRO ALA SER GLN LYS LYS ILE ASN SER GLY VAL SEQRES 14 A 485 LEU GLN ARG TRP THR LYS GLY PHE ASP ILE GLU GLY VAL SEQRES 15 A 485 GLU GLY HIS ASP VAL VAL PRO MET LEU GLN GLU GLN ILE SEQRES 16 A 485 GLU LYS LEU ASN ILE PRO ILE ASN VAL VAL ALA LEU ILE SEQRES 17 A 485 ASN ASP THR THR GLY THR LEU VAL ALA SER LEU TYR THR SEQRES 18 A 485 ASP PRO GLN THR LYS MET GLY ILE ILE ILE GLY THR GLY SEQRES 19 A 485 VAL ASN GLY ALA TYR TYR ASP VAL VAL SER GLY ILE GLU SEQRES 20 A 485 LYS LEU GLU GLY LEU LEU PRO GLU ASP ILE GLY PRO ASP SEQRES 21 A 485 SER PRO MET ALA ILE ASN CYS GLU TYR GLY SER PHE ASP SEQRES 22 A 485 ASN GLU HIS LEU VAL LEU PRO ARG THR LYS TYR ASP VAL SEQRES 23 A 485 ILE ILE ASP GLU GLU SER PRO ARG PRO GLY GLN GLN ALA SEQRES 24 A 485 PHE GLU LYS MET THR SER GLY TYR TYR LEU GLY GLU ILE SEQRES 25 A 485 MET ARG LEU VAL LEU LEU ASP LEU TYR ASP SER GLY PHE SEQRES 26 A 485 ILE PHE LYS ASP GLN ASP ILE SER LYS LEU LYS GLU ALA SEQRES 27 A 485 TYR VAL MET ASP THR SER TYR PRO SER LYS ILE GLU ASP SEQRES 28 A 485 ASP PRO PHE GLU ASN LEU GLU ASP THR ASP ASP LEU PHE SEQRES 29 A 485 LYS THR ASN LEU ASN ILE GLU THR THR VAL VAL GLU ARG SEQRES 30 A 485 LYS LEU ILE ARG LYS LEU ALA GLU LEU VAL GLY THR ARG SEQRES 31 A 485 ALA ALA ARG LEU THR VAL CYS GLY VAL SER ALA ILE CYS SEQRES 32 A 485 ASP LYS ARG GLY TYR LYS THR ALA HIS ILE ALA ALA ASP SEQRES 33 A 485 GLY SER VAL PHE ASN ARG TYR PRO GLY TYR LYS GLU LYS SEQRES 34 A 485 ALA ALA GLN ALA LEU LYS ASP ILE TYR ASN TRP ASP VAL SEQRES 35 A 485 GLU LYS MET GLU ASP HIS PRO ILE GLN LEU VAL ALA ALA SEQRES 36 A 485 GLU ASP GLY SER GLY VAL GLY ALA ALA ILE ILE ALA CYS SEQRES 37 A 485 LEU THR GLN LYS ARG LEU ALA ALA GLY LYS SER VAL GLY SEQRES 38 A 485 ILE LYS GLY GLU SEQRES 1 B 485 MET VAL ARG LEU GLY PRO LYS LYS PRO PRO ALA ARG LYS SEQRES 2 B 485 GLY SER MET ALA ASP VAL PRO ALA ASN LEU MET GLU GLN SEQRES 3 B 485 ILE HIS GLY LEU GLU THR LEU PHE THR VAL SER SER GLU SEQRES 4 B 485 LYS MET ARG SER ILE VAL LYS HIS PHE ILE SER GLU LEU SEQRES 5 B 485 ASP LYS GLY LEU SER LYS LYS GLY GLY ASN ILE PRO MET SEQRES 6 B 485 ILE PRO GLY TRP VAL VAL GLU TYR PRO THR GLY LYS GLU SEQRES 7 B 485 THR GLY ASP PHE LEU ALA LEU ASP LEU GLY GLY THR ASN SEQRES 8 B 485 LEU ARG VAL VAL LEU VAL LYS LEU GLY GLY ASN HIS ASP SEQRES 9 B 485 PHE ASP THR THR GLN ASN LYS TYR ARG LEU PRO ASP HIS SEQRES 10 B 485 LEU ARG THR GLY THR SER GLU GLN LEU TRP SER PHE ILE SEQRES 11 B 485 ALA LYS CYS LEU LYS GLU PHE VAL ASP GLU TRP TYR PRO SEQRES 12 B 485 ASP GLY VAL SER GLU PRO LEU PRO LEU GLY PHE THR PHE SEQRES 13 B 485 SER TYR PRO ALA SER GLN LYS LYS ILE ASN SER GLY VAL SEQRES 14 B 485 LEU GLN ARG TRP THR LYS GLY PHE ASP ILE GLU GLY VAL SEQRES 15 B 485 GLU GLY HIS ASP VAL VAL PRO MET LEU GLN GLU GLN ILE SEQRES 16 B 485 GLU LYS LEU ASN ILE PRO ILE ASN VAL VAL ALA LEU ILE SEQRES 17 B 485 ASN ASP THR THR GLY THR LEU VAL ALA SER LEU TYR THR SEQRES 18 B 485 ASP PRO GLN THR LYS MET GLY ILE ILE ILE GLY THR GLY SEQRES 19 B 485 VAL ASN GLY ALA TYR TYR ASP VAL VAL SER GLY ILE GLU SEQRES 20 B 485 LYS LEU GLU GLY LEU LEU PRO GLU ASP ILE GLY PRO ASP SEQRES 21 B 485 SER PRO MET ALA ILE ASN CYS GLU TYR GLY SER PHE ASP SEQRES 22 B 485 ASN GLU HIS LEU VAL LEU PRO ARG THR LYS TYR ASP VAL SEQRES 23 B 485 ILE ILE ASP GLU GLU SER PRO ARG PRO GLY GLN GLN ALA SEQRES 24 B 485 PHE GLU LYS MET THR SER GLY TYR TYR LEU GLY GLU ILE SEQRES 25 B 485 MET ARG LEU VAL LEU LEU ASP LEU TYR ASP SER GLY PHE SEQRES 26 B 485 ILE PHE LYS ASP GLN ASP ILE SER LYS LEU LYS GLU ALA SEQRES 27 B 485 TYR VAL MET ASP THR SER TYR PRO SER LYS ILE GLU ASP SEQRES 28 B 485 ASP PRO PHE GLU ASN LEU GLU ASP THR ASP ASP LEU PHE SEQRES 29 B 485 LYS THR ASN LEU ASN ILE GLU THR THR VAL VAL GLU ARG SEQRES 30 B 485 LYS LEU ILE ARG LYS LEU ALA GLU LEU VAL GLY THR ARG SEQRES 31 B 485 ALA ALA ARG LEU THR VAL CYS GLY VAL SER ALA ILE CYS SEQRES 32 B 485 ASP LYS ARG GLY TYR LYS THR ALA HIS ILE ALA ALA ASP SEQRES 33 B 485 GLY SER VAL PHE ASN ARG TYR PRO GLY TYR LYS GLU LYS SEQRES 34 B 485 ALA ALA GLN ALA LEU LYS ASP ILE TYR ASN TRP ASP VAL SEQRES 35 B 485 GLU LYS MET GLU ASP HIS PRO ILE GLN LEU VAL ALA ALA SEQRES 36 B 485 GLU ASP GLY SER GLY VAL GLY ALA ALA ILE ILE ALA CYS SEQRES 37 B 485 LEU THR GLN LYS ARG LEU ALA ALA GLY LYS SER VAL GLY SEQRES 38 B 485 ILE LYS GLY GLU HET GOL A 486 6 HET GOL A 487 6 HET PO4 A 488 5 HET GOL B 486 6 HET GOL B 487 6 HET GOL B 488 6 HET PO4 B 489 5 HET PO4 B 490 5 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 5 PO4 3(O4 P 3-) FORMUL 11 HOH *630(H2 O) HELIX 1 1 PRO A 20 THR A 35 1 16 HELIX 2 2 SER A 37 SER A 57 1 21 HELIX 3 3 PRO A 115 GLY A 121 5 7 HELIX 4 4 THR A 122 TYR A 142 1 21 HELIX 5 5 ASP A 186 LEU A 198 1 13 HELIX 6 6 ASN A 209 ASP A 222 1 14 HELIX 7 7 SER A 244 GLU A 250 5 7 HELIX 8 8 GLU A 268 PHE A 272 5 5 HELIX 9 9 THR A 282 SER A 292 1 11 HELIX 10 10 GLN A 298 SER A 305 1 8 HELIX 11 11 TYR A 308 SER A 323 1 16 HELIX 12 12 ILE A 332 GLU A 337 5 6 HELIX 13 13 THR A 343 ASP A 352 1 10 HELIX 14 14 LEU A 357 ASN A 369 1 13 HELIX 15 15 THR A 373 GLY A 407 1 35 HELIX 16 16 GLY A 417 TYR A 423 1 7 HELIX 17 17 GLY A 425 ASN A 439 1 15 HELIX 18 18 LYS A 444 HIS A 448 5 5 HELIX 19 19 GLY A 460 ALA A 476 1 17 HELIX 20 20 PRO B 20 THR B 35 1 16 HELIX 21 21 SER B 37 SER B 57 1 21 HELIX 22 22 PRO B 115 THR B 120 5 6 HELIX 23 23 THR B 122 TYR B 142 1 21 HELIX 24 24 ASP B 186 LEU B 198 1 13 HELIX 25 25 ASN B 209 ASP B 222 1 14 HELIX 26 26 SER B 244 GLU B 250 5 7 HELIX 27 27 GLU B 268 PHE B 272 5 5 HELIX 28 28 THR B 282 GLU B 291 1 10 HELIX 29 29 GLN B 298 SER B 305 1 8 HELIX 30 30 TYR B 308 SER B 323 1 16 HELIX 31 31 ILE B 332 GLU B 337 5 6 HELIX 32 32 THR B 343 ASP B 352 1 10 HELIX 33 33 LEU B 357 ASN B 369 1 13 HELIX 34 34 THR B 373 GLY B 407 1 35 HELIX 35 35 GLY B 417 TYR B 423 1 7 HELIX 36 36 GLY B 425 ASN B 439 1 15 HELIX 37 37 LYS B 444 HIS B 448 5 5 HELIX 38 38 GLY B 460 ALA B 476 1 17 SHEET 1 A 6 ILE A 66 PRO A 67 0 SHEET 2 A 6 PRO A 262 ASN A 266 -1 O ASN A 266 N ILE A 66 SHEET 3 A 6 VAL A 235 VAL A 242 -1 N TYR A 239 O ILE A 265 SHEET 4 A 6 THR A 225 ILE A 231 -1 N ILE A 230 O ASN A 236 SHEET 5 A 6 ALA A 411 ASP A 416 1 O HIS A 412 N LYS A 226 SHEET 6 A 6 ILE A 450 ALA A 454 1 O VAL A 453 N ALA A 415 SHEET 1 B 5 PHE A 105 ARG A 113 0 SHEET 2 B 5 ASN A 91 GLY A 100 -1 N LEU A 92 O TYR A 112 SHEET 3 B 5 THR A 79 LEU A 87 -1 N PHE A 82 O VAL A 97 SHEET 4 B 5 LEU A 150 THR A 155 1 O THR A 155 N LEU A 85 SHEET 5 B 5 ILE A 202 ILE A 208 1 O ASN A 203 N LEU A 152 SHEET 1 C 2 ALA A 160 SER A 161 0 SHEET 2 C 2 VAL A 169 LEU A 170 -1 O VAL A 169 N SER A 161 SHEET 1 D 6 ILE B 66 PRO B 67 0 SHEET 2 D 6 PRO B 262 ASN B 266 -1 O ASN B 266 N ILE B 66 SHEET 3 D 6 VAL B 235 VAL B 242 -1 N TYR B 239 O ILE B 265 SHEET 4 D 6 THR B 225 ILE B 231 -1 N ILE B 230 O ASN B 236 SHEET 5 D 6 ALA B 411 ASP B 416 1 O HIS B 412 N LYS B 226 SHEET 6 D 6 ILE B 450 ALA B 454 1 O VAL B 453 N ALA B 415 SHEET 1 E 5 PHE B 105 ARG B 113 0 SHEET 2 E 5 ASN B 91 GLY B 100 -1 N LEU B 92 O TYR B 112 SHEET 3 E 5 THR B 79 LEU B 87 -1 N PHE B 82 O VAL B 97 SHEET 4 E 5 LEU B 150 THR B 155 1 O THR B 155 N LEU B 85 SHEET 5 E 5 ILE B 202 ILE B 208 1 O ALA B 206 N PHE B 154 SHEET 1 F 2 ALA B 160 SER B 161 0 SHEET 2 F 2 VAL B 169 LEU B 170 -1 O VAL B 169 N SER B 161 SITE 1 AC1 7 ASN A 209 ASP A 210 THR A 211 GLY A 234 SITE 2 AC1 7 VAL A 235 ASN A 236 HOH A 579 SITE 1 AC2 9 PHE A 156 TYR A 158 ALA A 160 GLN A 162 SITE 2 AC2 9 HOH A 537 HOH A 575 HOH A 630 HOH A 684 SITE 3 AC2 9 HOH A 828 SITE 1 AC3 4 GLY A 232 THR A 233 GLY A 417 SER A 418 SITE 1 AC4 6 ASN B 209 ASP B 210 THR B 211 GLY B 234 SITE 2 AC4 6 VAL B 235 ASN B 236 SITE 1 AC5 4 THR A 372 THR A 373 VAL A 374 ARG A 377 SITE 1 AC6 3 HIS B 185 ASP B 186 HOH B 551 SITE 1 AC7 3 THR B 233 GLY B 417 SER B 418 SITE 1 AC8 5 SER B 37 SER B 38 GLU B 39 HOH B 702 SITE 2 AC8 5 HOH B 772 CRYST1 50.540 93.590 114.290 90.00 102.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019786 0.000000 0.004358 0.00000 SCALE2 0.000000 0.010685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008959 0.00000