HEADER TRANSFERASE/PROTEIN BINDING 30-JUL-10 3O71 TITLE CRYSTAL STRUCTURE OF ERK2/DCC PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1, MAPK 1, EXTRACELLULAR SIGNAL-REGULATED KINASE COMPND 5 2, ERK-2, MITOGEN-ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2, COMPND 6 MAP KINASE ISOFORM P42, P42-MAPK, ERT1; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PEPTIDE OF DELETED IN COLORECTAL CANCER; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 1140-1166; COMPND 13 SYNONYM: DELETED IN COLORECTAL CARCINOMA, ISOFORM CRA_A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MAPK1, ERK2, MAPK, PRKM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN RATS KEYWDS PROTEIN-PEPTIDE COMPLEX, KINASE, DCC, TRANSFERASE-PROTEIN BINDING KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.F.MA,Y.SHANG,Z.Y.WEI,W.Y.WEN,W.N.WANG,M.J.ZHANG REVDAT 2 20-MAR-24 3O71 1 REMARK REVDAT 1 15-JUN-11 3O71 0 JRNL AUTH W.MA,Y.SHANG,Z.WEI,W.WEN,W.WANG,M.ZHANG JRNL TITL PHOSPHORYLATION OF DCC BY ERK2 IS FACILITATED BY DIRECT JRNL TITL 2 DOCKING OF THE RECEPTOR P1 DOMAIN TO THE KINASE JRNL REF STRUCTURE V. 18 1502 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21070949 JRNL DOI 10.1016/J.STR.2010.08.011 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2918 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3955 ; 0.976 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 4.779 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;34.700 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;13.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2201 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1759 ; 1.194 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2850 ; 2.081 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1159 ; 3.068 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1101 ; 4.819 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -38.0720 4.2120 5.3020 REMARK 3 T TENSOR REMARK 3 T11: 1.3151 T22: 1.8123 REMARK 3 T33: 0.3934 T12: -0.6873 REMARK 3 T13: -0.0551 T23: -0.3397 REMARK 3 L TENSOR REMARK 3 L11: 26.5904 L22: 52.4541 REMARK 3 L33: 5.1399 L12: -42.1732 REMARK 3 L13: 14.1205 L23: -18.9558 REMARK 3 S TENSOR REMARK 3 S11: 0.5958 S12: 1.4641 S13: -0.3239 REMARK 3 S21: -1.9486 S22: -0.6434 S23: 1.5406 REMARK 3 S31: 0.6451 S32: 0.1108 S33: 0.0476 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1148 B 1155 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5180 -16.0970 8.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.8627 T22: 0.5648 REMARK 3 T33: 0.5121 T12: -0.0532 REMARK 3 T13: 0.2150 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 89.9946 L22: 1.9970 REMARK 3 L33: 17.9893 L12: -7.3504 REMARK 3 L13: 21.3958 L23: -3.0397 REMARK 3 S TENSOR REMARK 3 S11: 1.1926 S12: 0.1927 S13: -2.9321 REMARK 3 S21: -0.8625 S22: -0.2973 S23: 0.0885 REMARK 3 S31: 1.3735 S32: -0.3740 S33: -0.8953 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -28.9260 2.4730 7.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.8644 T22: 0.4427 REMARK 3 T33: 0.4844 T12: 0.0771 REMARK 3 T13: -0.2508 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.1472 L22: 5.1096 REMARK 3 L33: 5.4785 L12: -2.5278 REMARK 3 L13: -0.1150 L23: 4.3572 REMARK 3 S TENSOR REMARK 3 S11: -0.1193 S12: 0.0454 S13: 0.5889 REMARK 3 S21: -0.3774 S22: -0.0396 S23: 0.2264 REMARK 3 S31: 0.1159 S32: 0.3466 S33: 0.1589 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3650 5.4050 24.4810 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1471 REMARK 3 T33: 0.0440 T12: -0.0298 REMARK 3 T13: 0.0025 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 8.7597 L22: 3.9081 REMARK 3 L33: 1.4584 L12: 0.0892 REMARK 3 L13: -2.0884 L23: -1.9798 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.4320 S13: -0.1849 REMARK 3 S21: -0.0702 S22: 0.1020 S23: 0.1367 REMARK 3 S31: 0.0679 S32: -0.1977 S33: 0.0028 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2950 -17.3720 30.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0575 REMARK 3 T33: 0.1321 T12: -0.0221 REMARK 3 T13: 0.0282 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.0949 L22: 2.9914 REMARK 3 L33: 4.2751 L12: 0.3869 REMARK 3 L13: -0.2223 L23: 1.3093 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0334 S13: 0.0230 REMARK 3 S21: -0.0512 S22: -0.0371 S23: -0.1357 REMARK 3 S31: 0.1206 S32: 0.0357 S33: 0.0578 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7890 -18.1710 37.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0877 REMARK 3 T33: 0.1293 T12: -0.0166 REMARK 3 T13: -0.0251 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.5740 L22: 1.3608 REMARK 3 L33: 1.0067 L12: -0.0512 REMARK 3 L13: -0.2501 L23: -0.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.1041 S13: -0.0198 REMARK 3 S21: 0.1400 S22: -0.0251 S23: -0.2660 REMARK 3 S31: 0.0206 S32: 0.0713 S33: 0.0443 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7080 -3.8670 21.8380 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.1215 REMARK 3 T33: 0.0827 T12: -0.0459 REMARK 3 T13: 0.0306 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.6485 L22: 2.6708 REMARK 3 L33: 0.9785 L12: -0.6676 REMARK 3 L13: -0.2788 L23: -0.2626 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.1838 S13: 0.0127 REMARK 3 S21: -0.2890 S22: -0.0540 S23: -0.2099 REMARK 3 S31: -0.0382 S32: -0.0419 S33: 0.0463 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -35.1620 -11.3740 36.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.1397 REMARK 3 T33: 0.0999 T12: 0.0081 REMARK 3 T13: 0.0307 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.1350 L22: 4.1667 REMARK 3 L33: 1.3303 L12: -1.7042 REMARK 3 L13: -0.8855 L23: 1.4638 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.0821 S13: 0.0929 REMARK 3 S21: 0.0133 S22: -0.0316 S23: 0.0094 REMARK 3 S31: -0.1950 S32: -0.2368 S33: -0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 6.9, 18% PEG3350, AND REMARK 280 0.12 M KSCN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 521 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 175 REMARK 465 HIS A 176 REMARK 465 ASP A 177 REMARK 465 HIS A 178 REMARK 465 THR A 179 REMARK 465 LYS A 201 REMARK 465 GLY A 355 REMARK 465 TYR A 356 REMARK 465 ARG A 357 REMARK 465 SER A 358 REMARK 465 LYS B 1139 REMARK 465 ARG B 1140 REMARK 465 LYS B 1141 REMARK 465 GLY B 1142 REMARK 465 SER B 1143 REMARK 465 GLN B 1144 REMARK 465 LYS B 1145 REMARK 465 ASP B 1146 REMARK 465 LEU B 1147 REMARK 465 HIS B 1156 REMARK 465 GLU B 1157 REMARK 465 GLU B 1158 REMARK 465 MET B 1159 REMARK 465 GLU B 1160 REMARK 465 MET B 1161 REMARK 465 LYS B 1162 REMARK 465 ASN B 1163 REMARK 465 ILE B 1164 REMARK 465 GLU B 1165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 PRO A 174 CG CD REMARK 470 TYR A 203 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP B1153 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B1153 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 174 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 34 31.20 -140.15 REMARK 500 ARG A 146 -10.89 77.30 REMARK 500 ASP A 165 79.71 58.84 REMARK 500 ASP A 173 38.50 -154.39 REMARK 500 ASN A 199 68.84 60.55 REMARK 500 TYR A 203 37.07 -144.77 REMARK 500 LEU A 292 53.04 -94.40 REMARK 500 ASP A 316 88.85 -162.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 360 DBREF 3O71 A 1 358 UNP P63086 MK01_RAT 1 358 DBREF 3O71 B 1139 1165 UNP Q63155 Q63155_RAT 1140 1166 SEQRES 1 A 358 MET ALA ALA ALA ALA ALA ALA GLY PRO GLU MET VAL ARG SEQRES 2 A 358 GLY GLN VAL PHE ASP VAL GLY PRO ARG TYR THR ASN LEU SEQRES 3 A 358 SER TYR ILE GLY GLU GLY ALA TYR GLY MET VAL CYS SER SEQRES 4 A 358 ALA TYR ASP ASN LEU ASN LYS VAL ARG VAL ALA ILE LYS SEQRES 5 A 358 LYS ILE SER PRO PHE GLU HIS GLN THR TYR CYS GLN ARG SEQRES 6 A 358 THR LEU ARG GLU ILE LYS ILE LEU LEU ARG PHE ARG HIS SEQRES 7 A 358 GLU ASN ILE ILE GLY ILE ASN ASP ILE ILE ARG ALA PRO SEQRES 8 A 358 THR ILE GLU GLN MET LYS ASP VAL TYR ILE VAL GLN ASP SEQRES 9 A 358 LEU MET GLU THR ASP LEU TYR LYS LEU LEU LYS THR GLN SEQRES 10 A 358 HIS LEU SER ASN ASP HIS ILE CYS TYR PHE LEU TYR GLN SEQRES 11 A 358 ILE LEU ARG GLY LEU LYS TYR ILE HIS SER ALA ASN VAL SEQRES 12 A 358 LEU HIS ARG ASP LEU LYS PRO SER ASN LEU LEU LEU ASN SEQRES 13 A 358 THR THR CYS ASP LEU LYS ILE CYS ASP PHE GLY LEU ALA SEQRES 14 A 358 ARG VAL ALA ASP PRO ASP HIS ASP HIS THR GLY PHE LEU SEQRES 15 A 358 THR GLU TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU SEQRES 16 A 358 ILE MET LEU ASN SER LYS GLY TYR THR LYS SER ILE ASP SEQRES 17 A 358 ILE TRP SER VAL GLY CYS ILE LEU ALA GLU MET LEU SER SEQRES 18 A 358 ASN ARG PRO ILE PHE PRO GLY LYS HIS TYR LEU ASP GLN SEQRES 19 A 358 LEU ASN HIS ILE LEU GLY ILE LEU GLY SER PRO SER GLN SEQRES 20 A 358 GLU ASP LEU ASN CYS ILE ILE ASN LEU LYS ALA ARG ASN SEQRES 21 A 358 TYR LEU LEU SER LEU PRO HIS LYS ASN LYS VAL PRO TRP SEQRES 22 A 358 ASN ARG LEU PHE PRO ASN ALA ASP SER LYS ALA LEU ASP SEQRES 23 A 358 LEU LEU ASP LYS MET LEU THR PHE ASN PRO HIS LYS ARG SEQRES 24 A 358 ILE GLU VAL GLU GLN ALA LEU ALA HIS PRO TYR LEU GLU SEQRES 25 A 358 GLN TYR TYR ASP PRO SER ASP GLU PRO ILE ALA GLU ALA SEQRES 26 A 358 PRO PHE LYS PHE ASP MET GLU LEU ASP ASP LEU PRO LYS SEQRES 27 A 358 GLU LYS LEU LYS GLU LEU ILE PHE GLU GLU THR ALA ARG SEQRES 28 A 358 PHE GLN PRO GLY TYR ARG SER SEQRES 1 B 27 LYS ARG LYS GLY SER GLN LYS ASP LEU ARG PRO PRO ASP SEQRES 2 B 27 LEU TRP ILE HIS HIS GLU GLU MET GLU MET LYS ASN ILE SEQRES 3 B 27 GLU HET SCN A 359 3 HET SCN A 360 3 HETNAM SCN THIOCYANATE ION FORMUL 3 SCN 2(C N S 1-) FORMUL 5 HOH *176(H2 O) HELIX 1 1 HIS A 59 PHE A 76 1 18 HELIX 2 2 LEU A 110 GLN A 117 1 8 HELIX 3 3 SER A 120 ALA A 141 1 22 HELIX 4 4 LYS A 149 SER A 151 5 3 HELIX 5 5 PHE A 181 TYR A 185 5 5 HELIX 6 6 ALA A 193 LEU A 198 1 6 HELIX 7 7 LYS A 205 ASN A 222 1 18 HELIX 8 8 HIS A 230 GLY A 243 1 14 HELIX 9 9 SER A 246 ASN A 251 1 6 HELIX 10 10 ASN A 255 LEU A 265 1 11 HELIX 11 11 PRO A 272 PHE A 277 1 6 HELIX 12 12 ASP A 281 LEU A 292 1 12 HELIX 13 13 GLU A 301 ALA A 307 1 7 HELIX 14 14 HIS A 308 GLU A 312 5 5 HELIX 15 15 ASP A 316 GLU A 320 5 5 HELIX 16 16 PRO A 337 ALA A 350 1 14 HELIX 17 17 ARG A 351 GLN A 353 5 3 SHEET 1 A 2 MET A 11 VAL A 12 0 SHEET 2 A 2 GLN A 15 VAL A 16 -1 O GLN A 15 N VAL A 12 SHEET 1 B 5 TYR A 23 GLU A 31 0 SHEET 2 B 5 GLY A 35 ASP A 42 -1 O TYR A 41 N THR A 24 SHEET 3 B 5 VAL A 47 ILE A 54 -1 O VAL A 47 N ASP A 42 SHEET 4 B 5 VAL A 99 ASP A 104 -1 O GLN A 103 N ALA A 50 SHEET 5 B 5 ASP A 86 ILE A 88 -1 N ILE A 88 O TYR A 100 SHEET 1 C 3 THR A 108 ASP A 109 0 SHEET 2 C 3 LEU A 153 LEU A 155 -1 O LEU A 155 N THR A 108 SHEET 3 C 3 LEU A 161 ILE A 163 -1 O LYS A 162 N LEU A 154 SHEET 1 D 2 VAL A 143 LEU A 144 0 SHEET 2 D 2 ARG A 170 VAL A 171 -1 O ARG A 170 N LEU A 144 CISPEP 1 GLY A 20 PRO A 21 0 1.62 SITE 1 AC1 5 ARG A 189 ARG A 192 MET A 197 HOH A 368 SITE 2 AC1 5 HOH A 411 SITE 1 AC2 3 TYR A 62 ARG A 65 VAL A 186 CRYST1 87.178 87.178 94.459 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011471 0.006623 0.000000 0.00000 SCALE2 0.000000 0.013245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010587 0.00000