HEADER FLUORESCENT PROTEIN 30-JUL-10 3O77 TITLE THE STRUCTURE OF CA2+ SENSOR (CASE-16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN LIGHT CHAIN KINASE, SMOOTH MUSCLE,GREEN FLUORESCENT COMPND 3 PROTEIN,GREEN FLUORESCENT PROTEIN,CALMODULIN-1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MLCK,TELOKIN; COMPND 6 EC: 2.7.11.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF PEPTIDE OF M13 (RESIDUES 1730-1749, COMPND 10 UNP P11799), C-TERMINAL DOMAIN OF GREEN FLUORESCENT PROTEIN (RESIDUES COMPND 11 147-238, UNP P42212), LINKER, N-TERMINAL OF GREEN FLUORESCENT PROTEIN COMPND 12 (RESIDUES 2-146, UNP P42212) AND RESIDUES 3-149 OF CALMODULIN (UNP COMPND 13 P0DP23) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS, AEQUOREA VICTORIA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: CHICKEN, JELLYFISH, HUMAN; SOURCE 4 ORGANISM_TAXID: 9031, 6100, 9606; SOURCE 5 GENE: MYLK, GFP, CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) TUNER; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS CIRCULAR PERMUTATED GREEN FLUORESCENT PROTEIN, GENETICALLY ENCODED, KEYWDS 2 FLUORESCENT CALCIUM INDICATOR PROTEIN, CALCIUM SENSOR, GFP KEYWDS 3 CALMODULIN M13-PEPTIDE, M13-PEPTIDE, GYG NATURALLY MODIFIED KEYWDS 4 TRIPEPTIDE ACTS AS CHROMOPHORE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.LEDER,W.STARK,F.FREULER,M.MARSH,M.MEYERHOFER,T.STETTLER,L.M.MAYR, AUTHOR 2 O.V.BRITANOVA,L.A.STRUKOVA,D.M.CHUDAKOV REVDAT 4 21-JUN-17 3O77 1 COMPND SOURCE DBREF REVDAT 3 13-JUN-12 3O77 1 SEQADV REVDAT 2 25-APR-12 3O77 1 JRNL VERSN REMARK REVDAT 1 29-SEP-10 3O77 0 JRNL AUTH L.LEDER,W.STARK,F.FREULER,M.MARSH,M.MEYERHOFER,T.STETTLER, JRNL AUTH 2 L.M.MAYR,O.V.BRITANOVA,L.A.STRUKOVA,D.M.CHUDAKOV, JRNL AUTH 3 E.A.SOUSLOVA JRNL TITL THE STRUCTURE OF CA2+ SENSOR CASE16 REVEALS THE MECHANISM OF JRNL TITL 2 REACTION TO LOW CA2+ CONCENTRATIONS JRNL REF SENSORS (BASEL) V. 10 8143 2010 JRNL REFN ESSN 1424-8220 JRNL PMID 22163646 JRNL DOI 10.3390/S100908143 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3119 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4206 ; 1.891 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 7.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;34.095 ;25.256 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;20.785 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2392 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1374 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2005 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.182 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.269 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 0.999 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3075 ; 1.892 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 2.693 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1131 ; 4.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5040 47.5900 0.7700 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.7844 REMARK 3 T33: 0.5217 T12: 0.0242 REMARK 3 T13: 0.0020 T23: 0.2289 REMARK 3 L TENSOR REMARK 3 L11: 14.4218 L22: 9.5175 REMARK 3 L33: 1.1684 L12: -6.7217 REMARK 3 L13: -1.4443 L23: -1.6258 REMARK 3 S TENSOR REMARK 3 S11: 0.4081 S12: 3.1684 S13: 1.1001 REMARK 3 S21: 0.0057 S22: -0.8019 S23: -1.0868 REMARK 3 S31: -0.0941 S32: -0.5234 S33: 0.3939 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5520 31.1130 5.0540 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.0980 REMARK 3 T33: 0.0115 T12: 0.0421 REMARK 3 T13: -0.0016 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.6855 L22: 3.3232 REMARK 3 L33: 2.0610 L12: -0.3259 REMARK 3 L13: -0.8322 L23: 0.1440 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0859 S13: -0.0784 REMARK 3 S21: -0.0362 S22: 0.0104 S23: -0.1101 REMARK 3 S31: -0.0215 S32: 0.2106 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0140 45.5340 -14.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.2191 REMARK 3 T33: 0.1224 T12: 0.1164 REMARK 3 T13: 0.0287 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 9.3122 L22: 9.9217 REMARK 3 L33: 5.1262 L12: -0.7733 REMARK 3 L13: 0.2792 L23: 0.9259 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: 0.4994 S13: 0.7109 REMARK 3 S21: -0.0148 S22: -0.0527 S23: 0.7252 REMARK 3 S31: -0.6914 S32: -0.4072 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2010 45.0240 8.7960 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.0424 REMARK 3 T33: 0.0226 T12: -0.0076 REMARK 3 T13: 0.0048 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 5.9065 L22: 7.2998 REMARK 3 L33: 2.5982 L12: -0.8932 REMARK 3 L13: -0.0315 L23: 0.2433 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: 0.0146 S13: 0.0241 REMARK 3 S21: 0.1161 S22: 0.0187 S23: -0.1249 REMARK 3 S31: -0.0045 S32: -0.0780 S33: 0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 70.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 50MM IMIDAZOL, 1.9M REMARK 280 NA2MALONATE PH 6.4; PROTEIN STOCK SOLUTION: 50MM TRIS HCL (PH REMARK 280 7.4), 150MM NACL, 10MM DITHIOTHREITOL, PROTEIN 4.1MG/ML; DROP REMARK 280 RATIO RESERVOIR/PROTEIN = 1/3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.24950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.47050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.24950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.47050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 21 REMARK 465 LEU A 22 REMARK 465 ILE A 107 REMARK 465 THR A 108 REMARK 465 LEU A 109 REMARK 465 GLY A 110 REMARK 465 MET A 111 REMARK 465 ASP A 112 REMARK 465 GLU A 113 REMARK 465 LEU A 114 REMARK 465 TYR A 115 REMARK 465 ASN A 116 REMARK 465 VAL A 117 REMARK 465 ASP A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 SER A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 THR A 124 REMARK 465 GLY A 125 REMARK 465 ALA A 326 REMARK 465 ASP A 327 REMARK 465 GLY A 328 REMARK 465 ASN A 329 REMARK 465 LYS A 417 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLN A 35 CD OE1 NE2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 ASP A 325 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 381 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 19 83.33 -66.44 REMARK 500 LYS A 36 -0.57 72.63 REMARK 500 ASP A 68 96.97 179.36 REMARK 500 ASP A 200 95.14 -17.72 REMARK 500 ASP A 227 -152.36 -156.41 REMARK 500 GLN A 272 138.00 -16.84 REMARK 500 MET A 345 -36.40 85.06 REMARK 500 LYS A 346 107.40 -43.67 REMARK 500 ASP A 349 5.81 128.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 67 ASP A 68 -30.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 548 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 418 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 362 OD1 REMARK 620 2 HOH A 566 O 168.4 REMARK 620 3 TYR A 368 O 87.9 85.1 REMARK 620 4 GLU A 373 OE1 107.1 80.2 75.8 REMARK 620 5 GLU A 373 OE2 94.6 97.0 127.5 53.3 REMARK 620 6 ASN A 366 OD1 87.3 83.0 86.9 156.8 145.5 REMARK 620 7 ASP A 364 OD1 79.6 102.4 151.6 132.2 79.2 67.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 419 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 400 OD1 REMARK 620 2 ASP A 398 OD1 78.0 REMARK 620 3 HOH A 547 O 96.5 166.7 REMARK 620 4 GLN A 404 O 154.1 87.2 93.2 REMARK 620 5 ASP A 402 OD1 84.0 83.8 83.6 73.2 REMARK 620 6 GLU A 409 OE2 78.5 82.7 108.2 120.9 159.9 REMARK 620 7 GLU A 409 OE1 126.1 109.9 83.1 78.8 148.2 51.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O78 RELATED DB: PDB REMARK 900 RELATED ID: 3EK4 RELATED DB: PDB REMARK 900 RELATED ID: 3EK7 RELATED DB: PDB REMARK 900 RELATED ID: 3EK8 RELATED DB: PDB REMARK 900 RELATED ID: 3EKH RELATED DB: PDB REMARK 900 RELATED ID: 3EKJ RELATED DB: PDB REMARK 900 RELATED ID: 3EVP RELATED DB: PDB REMARK 900 RELATED ID: 3EVR RELATED DB: PDB REMARK 900 RELATED ID: 3EVU RELATED DB: PDB REMARK 900 RELATED ID: 3EVV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP RESIDUE 65 SER AND 72 SER OF GREEN FLUORESCENT PROTEIN IN REMARK 999 DATABASE UNP P42212 (GFP_AEQVI) SHOULD BE GLY. RESIDUE S65G FORM REMARK 999 THE CHROMOPHORE CR2 190. RESIDUE S72G (RESIDUE NUMBER 196 IN THE REMARK 999 COORDINATES RESPECTIVELY) IS MUTAGENESIS. THESE SEQUENCE WERE BASED REMARK 999 ON REFERENCES IN THE DATABASE UNP P42212. DBREF 3O77 A 5 24 UNP P11799 MYLK_CHICK 1730 1749 DBREF 3O77 A 25 116 UNP P42212 GFP_AEQVI 147 238 DBREF 3O77 A 126 270 UNP P42212 GFP_AEQVI 2 146 DBREF 3O77 A 271 417 UNP P0DP23 CALM1_HUMAN 3 149 SEQADV 3O77 GLY A 1 UNP P11799 EXPRESSION TAG SEQADV 3O77 PRO A 2 UNP P11799 EXPRESSION TAG SEQADV 3O77 GLY A 3 UNP P11799 EXPRESSION TAG SEQADV 3O77 SER A 4 UNP P11799 EXPRESSION TAG SEQADV 3O77 SER A 5 UNP P11799 ALA 1730 ENGINEERED MUTATION SEQADV 3O77 ASN A 10 UNP P11799 GLN 1735 ENGINEERED MUTATION SEQADV 3O77 LEU A 25 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 3O77 GLU A 26 UNP P42212 HIS 148 ENGINEERED MUTATION SEQADV 3O77 ALA A 41 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 3O77 VAL A 49 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 3O77 PHE A 81 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 3O77 VAL A 84 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 3O77 LEU A 109 UNP P42212 HIS 231 ENGINEERED MUTATION SEQADV 3O77 ASN A 116 UNP P42212 LYS 238 ENGINEERED MUTATION SEQADV 3O77 VAL A 117 UNP P42212 LINKER SEQADV 3O77 ASP A 118 UNP P42212 LINKER SEQADV 3O77 GLY A 119 UNP P42212 LINKER SEQADV 3O77 GLY A 120 UNP P42212 LINKER SEQADV 3O77 SER A 121 UNP P42212 LINKER SEQADV 3O77 GLY A 122 UNP P42212 LINKER SEQADV 3O77 GLY A 123 UNP P42212 LINKER SEQADV 3O77 THR A 124 UNP P42212 LINKER SEQADV 3O77 GLY A 125 UNP P42212 LINKER SEQADV 3O77 LEU A 170 UNP P42212 PHE 46 ENGINEERED MUTATION SEQADV 3O77 LEU A 188 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 3O77 CR2 A 190 UNP P42212 SER 65 CHROMOPHORE SEQADV 3O77 CR2 A 190 UNP P42212 TYR 66 CHROMOPHORE SEQADV 3O77 CR2 A 190 UNP P42212 GLY 67 CHROMOPHORE SEQADV 3O77 LEU A 192 UNP P42212 VAL 68 ENGINEERED MUTATION SEQADV 3O77 LYS A 193 UNP P42212 GLN 69 ENGINEERED MUTATION SEQADV 3O77 ALA A 196 UNP P42212 SER 72 SEE SEQUENCE DETAILS SEQADV 3O77 GLY A 253 UNP P42212 ASP 129 ENGINEERED MUTATION SEQADV 3O77 SER A 269 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 3O77 ARG A 270 UNP P42212 ASN 146 ENGINEERED MUTATION SEQRES 1 A 415 GLY PRO GLY SER SER ARG ARG LYS TRP ASN LYS THR GLY SEQRES 2 A 415 HIS ALA VAL ARG ALA ILE GLY ARG LEU SER SER LEU GLU SEQRES 3 A 415 ASN VAL TYR ILE MET ALA ASP LYS GLN LYS ASN GLY ILE SEQRES 4 A 415 LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL GLU ASP GLY SEQRES 5 A 415 SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR PRO SEQRES 6 A 415 ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR SEQRES 7 A 415 LEU SER PHE GLN SER VAL LEU SER LYS ASP PRO ASN GLU SEQRES 8 A 415 LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA SEQRES 9 A 415 ALA GLY ILE THR LEU GLY MET ASP GLU LEU TYR ASN VAL SEQRES 10 A 415 ASP GLY GLY SER GLY GLY THR GLY SER LYS GLY GLU GLU SEQRES 11 A 415 LEU PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP SEQRES 12 A 415 GLY ASP VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU SEQRES 13 A 415 GLY GLU GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS SEQRES 14 A 415 LEU ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO SEQRES 15 A 415 THR LEU VAL THR THR LEU CR2 LEU LYS CYS PHE ALA ARG SEQRES 16 A 415 TYR PRO ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER SEQRES 17 A 415 ALA MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE SEQRES 18 A 415 PHE LYS ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL SEQRES 19 A 415 LYS PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU SEQRES 20 A 415 LYS GLY ILE GLY PHE LYS GLU ASP GLY ASN ILE LEU GLY SEQRES 21 A 415 HIS LYS LEU GLU TYR ASN SER ARG ASP GLN LEU THR GLU SEQRES 22 A 415 GLU GLN ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE SEQRES 23 A 415 ASP LYS ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU SEQRES 24 A 415 GLY THR VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU SEQRES 25 A 415 ALA GLU LEU GLN ASP MET ILE ASN GLU VAL ASP ALA ASP SEQRES 26 A 415 GLY ASN GLY THR ILE ASP PHE PRO GLU PHE LEU THR MET SEQRES 27 A 415 MET ALA ARG LYS MET LYS ASP THR ASP SER GLU GLU GLU SEQRES 28 A 415 ILE ARG GLU ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN SEQRES 29 A 415 GLY TYR ILE SER ALA ALA GLU LEU ARG HIS VAL MET THR SEQRES 30 A 415 ASN LEU GLY GLU LYS LEU THR ASP GLU GLU VAL ASP GLU SEQRES 31 A 415 MET ILE ARG GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL SEQRES 32 A 415 ASN TYR GLU GLU PHE VAL GLN MET MET THR ALA LYS MODRES 3O77 CR2 A 190 SER CHROMOPHORE HET CR2 A 190 19 HET CA A 418 1 HET CA A 419 1 HET SO4 A 420 5 HET SO4 A 421 5 HET CL A 422 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 CA 2(CA 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 7 HOH *145(H2 O) HELIX 1 1 GLY A 1 ILE A 19 1 19 HELIX 2 2 SER A 126 LEU A 131 1 6 HELIX 3 3 ALA A 161 TYR A 163 5 3 HELIX 4 4 PRO A 180 LEU A 184 5 5 HELIX 5 5 LEU A 192 ALA A 196 5 5 HELIX 6 6 MET A 202 HIS A 205 5 4 HELIX 7 7 ASP A 206 ALA A 211 1 6 HELIX 8 8 THR A 274 LEU A 287 1 14 HELIX 9 9 GLU A 300 LEU A 308 1 9 HELIX 10 10 ALA A 315 GLU A 323 1 9 HELIX 11 11 PHE A 334 LYS A 344 1 11 HELIX 12 12 SER A 350 ASP A 362 1 13 HELIX 13 13 SER A 370 LEU A 381 1 12 HELIX 14 14 THR A 386 ASP A 398 1 13 HELIX 15 15 TYR A 407 THR A 415 1 9 SHEET 1 A12 LEU A 25 ASP A 33 0 SHEET 2 A12 GLY A 38 ASN A 48 -1 O LYS A 40 N MET A 31 SHEET 3 A12 VAL A 54 PRO A 65 -1 O GLN A 55 N HIS A 47 SHEET 4 A12 TYR A 216 PHE A 224 -1 O VAL A 217 N THR A 64 SHEET 5 A12 ASN A 229 GLU A 239 -1 O ALA A 234 N GLN A 218 SHEET 6 A12 THR A 242 ILE A 252 -1 O VAL A 244 N LYS A 237 SHEET 7 A12 VAL A 136 VAL A 146 1 N ASP A 143 O LEU A 249 SHEET 8 A12 HIS A 149 ASP A 160 -1 O PHE A 151 N GLY A 144 SHEET 9 A12 LYS A 165 CYS A 172 -1 O LYS A 165 N ASP A 160 SHEET 10 A12 HIS A 95 ALA A 105 -1 N LEU A 98 O LEU A 168 SHEET 11 A12 HIS A 77 SER A 86 -1 N VAL A 84 O LEU A 99 SHEET 12 A12 LEU A 25 ASP A 33 -1 N ILE A 30 O HIS A 77 SHEET 1 B 2 THR A 295 THR A 297 0 SHEET 2 B 2 THR A 331 ASP A 333 -1 O ILE A 332 N ILE A 296 SHEET 1 C 2 TYR A 368 ILE A 369 0 SHEET 2 C 2 VAL A 405 ASN A 406 -1 O VAL A 405 N ILE A 369 LINK C LEU A 188 N1 CR2 A 190 1555 1555 1.35 LINK C3 CR2 A 190 N LEU A 192 1555 1555 1.33 LINK OD1 ASP A 362 CA CA A 418 1555 1555 2.05 LINK CA CA A 418 O HOH A 566 1555 1555 2.07 LINK OD1 ASP A 400 CA CA A 419 1555 1555 2.15 LINK OD1 ASP A 398 CA CA A 419 1555 1555 2.20 LINK CA CA A 419 O HOH A 547 1555 1555 2.28 LINK O GLN A 404 CA CA A 419 1555 1555 2.28 LINK O TYR A 368 CA CA A 418 1555 1555 2.39 LINK OE1 GLU A 373 CA CA A 418 1555 1555 2.43 LINK OD1 ASP A 402 CA CA A 419 1555 1555 2.44 LINK OE2 GLU A 373 CA CA A 418 1555 1555 2.46 LINK OE2 GLU A 409 CA CA A 419 1555 1555 2.47 LINK OD1 ASN A 366 CA CA A 418 1555 1555 2.49 LINK OE1 GLU A 409 CA CA A 419 1555 1555 2.55 LINK OD1 ASP A 364 CA CA A 418 1555 1555 2.64 CISPEP 1 MET A 212 PRO A 213 0 1.05 SITE 1 AC1 6 ASP A 362 ASP A 364 ASN A 366 TYR A 368 SITE 2 AC1 6 GLU A 373 HOH A 566 SITE 1 AC2 6 ASP A 398 ASP A 400 ASP A 402 GLN A 404 SITE 2 AC2 6 GLU A 409 HOH A 547 SITE 1 AC3 5 PRO A 180 TRP A 181 HIS A 263 HOH A 464 SITE 2 AC3 5 HOH A 510 SITE 1 AC4 4 ARG A 46 LEU A 56 LYS A 384 HOH A 523 SITE 1 AC5 4 HIS A 47 ALA A 57 HIS A 59 HOH A 546 CRYST1 92.499 106.941 43.265 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023113 0.00000