data_3OFF # _entry.id 3OFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OFF RCSB RCSB061047 WWPDB D_1000061047 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3OFE Ortholog unspecified PDB 3OFG Ortholog unspecified PDB 3OFH Ortholog unspecified PDB 2I9S 'NMR solution structure of Mesd structure domain' unspecified PDB 2RQK 'NMR solution structure of Mesd' unspecified PDB 2RQM 'NMR solution structure of Mesd' unspecified # _pdbx_database_status.entry_id 3OFF _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Collins, M.N.' 1 'Hendrickson, W.A.' 2 # _citation.id primary _citation.title 'Structural Characterization of the Boca/Mesd Maturation Factors for LDL-Receptor-Type beta-Propeller Domains' _citation.journal_abbrev Structure _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Collins, M.N.' 1 primary 'Hendrickson, W.A.' 2 # _cell.length_a 62.284 _cell.length_b 62.284 _cell.length_c 89.675 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3OFF _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 3OFF _symmetry.Int_Tables_number 179 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'LDLR chaperone boca' 10637.482 1 ? ? 'sequence database residues 88-172' ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSQKH(MSE)KKGRTL(MSE)TFVSVTGNPTREESDTITKLWQTSLWNNHIQAERY(MSE)VDDNRAIFLFKDGTQAWDA KDFLIEQERCKGVTIENKEYPG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSQKHMKKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCKG VTIENKEYPG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 LYS n 1 5 HIS n 1 6 MSE n 1 7 LYS n 1 8 LYS n 1 9 GLY n 1 10 ARG n 1 11 THR n 1 12 LEU n 1 13 MSE n 1 14 THR n 1 15 PHE n 1 16 VAL n 1 17 SER n 1 18 VAL n 1 19 THR n 1 20 GLY n 1 21 ASN n 1 22 PRO n 1 23 THR n 1 24 ARG n 1 25 GLU n 1 26 GLU n 1 27 SER n 1 28 ASP n 1 29 THR n 1 30 ILE n 1 31 THR n 1 32 LYS n 1 33 LEU n 1 34 TRP n 1 35 GLN n 1 36 THR n 1 37 SER n 1 38 LEU n 1 39 TRP n 1 40 ASN n 1 41 ASN n 1 42 HIS n 1 43 ILE n 1 44 GLN n 1 45 ALA n 1 46 GLU n 1 47 ARG n 1 48 TYR n 1 49 MSE n 1 50 VAL n 1 51 ASP n 1 52 ASP n 1 53 ASN n 1 54 ARG n 1 55 ALA n 1 56 ILE n 1 57 PHE n 1 58 LEU n 1 59 PHE n 1 60 LYS n 1 61 ASP n 1 62 GLY n 1 63 THR n 1 64 GLN n 1 65 ALA n 1 66 TRP n 1 67 ASP n 1 68 ALA n 1 69 LYS n 1 70 ASP n 1 71 PHE n 1 72 LEU n 1 73 ILE n 1 74 GLU n 1 75 GLN n 1 76 GLU n 1 77 ARG n 1 78 CYS n 1 79 LYS n 1 80 GLY n 1 81 VAL n 1 82 THR n 1 83 ILE n 1 84 GLU n 1 85 ASN n 1 86 LYS n 1 87 GLU n 1 88 TYR n 1 89 PRO n 1 90 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'boca, CG30498' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MESD_DROME _struct_ref.pdbx_db_accession Q8T9B6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KKGRTLMTFVSVTGNPTREESDTITKLWQTSLWNNHIQAERYMVDDNRAIFLFKDGTQAWDAKDFLIEQERCKGVTIENK EYPG ; _struct_ref.pdbx_align_begin 89 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8T9B6 _struct_ref_seq.db_align_beg 89 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 89 _struct_ref_seq.pdbx_auth_seq_align_end 172 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OFF GLY A 1 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 83 1 1 3OFF GLN A 3 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 85 2 1 3OFF LYS A 4 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 86 3 1 3OFF HIS A 5 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 87 4 1 3OFF MSE A 6 ? UNP Q8T9B6 ? ? 'EXPRESSION TAG' 88 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3OFF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.7 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;48-52% saturated AmSO4, 100mM NaAc pH 5.6-5.8 at 298 C, one of four crystal morphologies, vapor diffusion, hanging drop, temperature 293K, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-03-09 _diffrn_detector.details 'monochromator + mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator SILICON _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_wavelength_list 0.9790 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C # _reflns.entry_id 3OFF _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 40.000 _reflns.number_obs 13036 _reflns.pdbx_Rmerge_I_obs 0.129 _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.pdbx_chi_squared 0.820 _reflns.pdbx_redundancy 11.100 _reflns.percent_possible_obs 99.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 13168 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.000 2.030 ? ? ? 0.430 ? ? 0.567 9.800 ? 661 100.000 ? 1 2.030 2.070 ? ? ? 0.433 ? ? 0.528 10.100 ? 655 99.800 ? 2 2.070 2.110 ? ? ? 0.416 ? ? 0.543 10.400 ? 649 99.800 ? 3 2.110 2.150 ? ? ? 0.389 ? ? 0.534 10.700 ? 668 99.900 ? 4 2.150 2.200 ? ? ? 0.319 ? ? 0.573 10.800 ? 642 99.800 ? 5 2.200 2.250 ? ? ? 0.396 ? ? 0.618 11.100 ? 658 99.700 ? 6 2.250 2.310 ? ? ? 0.369 ? ? 0.701 11.500 ? 653 99.700 ? 7 2.310 2.370 ? ? ? 0.268 ? ? 0.621 11.600 ? 670 99.700 ? 8 2.370 2.440 ? ? ? 0.281 ? ? 0.752 11.700 ? 633 99.700 ? 9 2.440 2.520 ? ? ? 0.258 ? ? 0.759 11.600 ? 660 99.700 ? 10 2.520 2.610 ? ? ? 0.273 ? ? 0.844 11.700 ? 664 99.700 ? 11 2.610 2.710 ? ? ? 0.207 ? ? 0.927 11.600 ? 656 99.200 ? 12 2.710 2.840 ? ? ? 0.158 ? ? 0.815 11.800 ? 650 99.400 ? 13 2.840 2.990 ? ? ? 0.117 ? ? 0.855 11.700 ? 645 99.200 ? 14 2.990 3.170 ? ? ? 0.103 ? ? 0.890 11.500 ? 657 99.200 ? 15 3.170 3.420 ? ? ? 0.092 ? ? 0.954 11.500 ? 647 99.100 ? 16 3.420 3.760 ? ? ? 0.083 ? ? 1.127 11.200 ? 650 98.500 ? 17 3.760 4.310 ? ? ? 0.073 ? ? 1.336 11.000 ? 642 98.500 ? 18 4.310 5.420 ? ? ? 0.063 ? ? 1.240 10.900 ? 657 98.200 ? 19 5.420 40.000 ? ? ? 0.064 ? ? 1.187 10.300 ? 619 92.100 ? 20 # _refine.entry_id 3OFF _refine.ls_d_res_high 2.0020 _refine.ls_d_res_low 29.4190 _refine.pdbx_ls_sigma_F 0.060 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 91.6700 _refine.ls_number_reflns_obs 12039 _refine.ls_number_reflns_all 13133 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1935 _refine.ls_R_factor_R_work 0.1900 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2257 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9500 _refine.ls_number_reflns_R_free 1198 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.4629 _refine.solvent_model_param_bsol 49.3080 _refine.solvent_model_param_ksol 0.3750 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 4.1982 _refine.aniso_B[2][2] 4.1982 _refine.aniso_B[3][3] -8.3964 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 74.080 _refine.B_iso_min 9.290 _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error 18.92 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 668 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 764 _refine_hist.d_res_high 2.0020 _refine_hist.d_res_low 29.4190 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 728 0.003 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 985 0.667 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 112 0.046 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 125 0.002 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 254 15.563 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.0016 2.0817 9 96.0000 1263 . 0.1991 0.2498 . 144 . 1407 . . 'X-RAY DIFFRACTION' 2.0817 2.1764 9 92.0000 1193 . 0.1902 0.2452 . 133 . 1326 . . 'X-RAY DIFFRACTION' 2.1764 2.2911 9 85.0000 1132 . 0.1779 0.1733 . 120 . 1252 . . 'X-RAY DIFFRACTION' 2.2911 2.4346 9 89.0000 1163 . 0.1859 0.2356 . 134 . 1297 . . 'X-RAY DIFFRACTION' 2.4346 2.6225 9 83.0000 1063 . 0.1857 0.2105 . 124 . 1187 . . 'X-RAY DIFFRACTION' 2.6225 2.8862 9 91.0000 1196 . 0.2111 0.1975 . 131 . 1327 . . 'X-RAY DIFFRACTION' 2.8862 3.3033 9 99.0000 1306 . 0.1828 0.2673 . 142 . 1448 . . 'X-RAY DIFFRACTION' 3.3033 4.1600 9 95.0000 1261 . 0.1731 0.1843 . 134 . 1395 . . 'X-RAY DIFFRACTION' 4.1600 29.4217 9 96.0000 1264 . 0.1976 0.2404 . 136 . 1400 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3OFF _struct.title 'Structured Domain of Drosophila melanogaster Boca p65 2 2 Crystal form' _struct.pdbx_descriptor 'LDLR chaperone boca' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OFF _struct_keywords.text 'mesd, molecular chaperone, protein folding, YWTD propeller, LRP, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? ASN A 41 ? THR A 105 ASN A 123 1 ? 19 HELX_P HELX_P2 2 ASP A 61 ? THR A 63 ? ASP A 143 THR A 145 5 ? 3 HELX_P HELX_P3 3 GLN A 64 ? ILE A 73 ? GLN A 146 ILE A 155 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 6 C ? ? ? 1_555 A LYS 7 N ? ? A MSE 88 A LYS 89 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A LEU 12 C ? ? ? 1_555 A MSE 13 N ? ? A LEU 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 13 C ? ? ? 1_555 A THR 14 N ? ? A MSE 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A TYR 48 C ? ? ? 1_555 A MSE 49 N ? ? A TYR 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A MSE 49 C ? ? ? 1_555 A VAL 50 N ? ? A MSE 131 A VAL 132 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 45 ? ASP A 51 ? ALA A 127 ASP A 133 A 2 ARG A 54 ? PHE A 59 ? ARG A 136 PHE A 141 A 3 LEU A 12 ? VAL A 18 ? LEU A 94 VAL A 100 A 4 CYS A 78 ? ILE A 83 ? CYS A 160 ILE A 165 A 5 LYS A 86 ? PRO A 89 ? LYS A 168 PRO A 171 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 46 ? N GLU A 128 O LEU A 58 ? O LEU A 140 A 2 3 O ALA A 55 ? O ALA A 137 N VAL A 16 ? N VAL A 98 A 3 4 N PHE A 15 ? N PHE A 97 O THR A 82 ? O THR A 164 A 4 5 N VAL A 81 ? N VAL A 163 O TYR A 88 ? O TYR A 170 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 2' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 3' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT A 173' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 174' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HOH G . ? HOH A 21 . ? 9_554 ? 2 AC1 9 HOH G . ? HOH A 21 . ? 1_555 ? 3 AC1 9 THR A 19 ? THR A 101 . ? 1_555 ? 4 AC1 9 THR A 19 ? THR A 101 . ? 9_554 ? 5 AC1 9 GLY A 20 ? GLY A 102 . ? 9_554 ? 6 AC1 9 GLY A 20 ? GLY A 102 . ? 1_555 ? 7 AC1 9 LYS A 79 ? LYS A 161 . ? 9_554 ? 8 AC1 9 NA F . ? NA A 174 . ? 9_554 ? 9 AC1 9 NA F . ? NA A 174 . ? 1_555 ? 10 AC2 4 HOH G . ? HOH A 13 . ? 1_555 ? 11 AC2 4 HOH G . ? HOH A 15 . ? 5_555 ? 12 AC2 4 HOH G . ? HOH A 19 . ? 5_555 ? 13 AC2 4 GLN A 64 ? GLN A 146 . ? 1_555 ? 14 AC3 5 HOH G . ? HOH A 33 . ? 1_555 ? 15 AC3 5 GLY A 20 ? GLY A 102 . ? 1_555 ? 16 AC3 5 ASN A 21 ? ASN A 103 . ? 1_555 ? 17 AC3 5 ARG A 77 ? ARG A 159 . ? 1_555 ? 18 AC3 5 LYS A 86 ? LYS A 168 . ? 6_554 ? 19 AC4 4 LYS A 7 ? LYS A 89 . ? 1_555 ? 20 AC4 4 GLY A 9 ? GLY A 91 . ? 1_555 ? 21 AC4 4 ARG A 10 ? ARG A 92 . ? 1_555 ? 22 AC4 4 THR A 11 ? THR A 93 . ? 1_555 ? 23 AC5 2 SO4 B . ? SO4 A 1 . ? 1_555 ? 24 AC5 2 SO4 B . ? SO4 A 1 . ? 9_554 ? # _atom_sites.entry_id 3OFF _atom_sites.fract_transf_matrix[1][1] 0.016055 _atom_sites.fract_transf_matrix[1][2] 0.009270 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011151 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 83 ? ? ? A . n A 1 2 SER 2 84 ? ? ? A . n A 1 3 GLN 3 85 ? ? ? A . n A 1 4 LYS 4 86 ? ? ? A . n A 1 5 HIS 5 87 ? ? ? A . n A 1 6 MSE 6 88 88 MSE MSE A . n A 1 7 LYS 7 89 89 LYS LYS A . n A 1 8 LYS 8 90 90 LYS LYS A . n A 1 9 GLY 9 91 91 GLY GLY A . n A 1 10 ARG 10 92 92 ARG ARG A . n A 1 11 THR 11 93 93 THR THR A . n A 1 12 LEU 12 94 94 LEU LEU A . n A 1 13 MSE 13 95 95 MSE MSE A . n A 1 14 THR 14 96 96 THR THR A . n A 1 15 PHE 15 97 97 PHE PHE A . n A 1 16 VAL 16 98 98 VAL VAL A . n A 1 17 SER 17 99 99 SER SER A . n A 1 18 VAL 18 100 100 VAL VAL A . n A 1 19 THR 19 101 101 THR THR A . n A 1 20 GLY 20 102 102 GLY GLY A . n A 1 21 ASN 21 103 103 ASN ASN A . n A 1 22 PRO 22 104 104 PRO PRO A . n A 1 23 THR 23 105 105 THR THR A . n A 1 24 ARG 24 106 106 ARG ARG A . n A 1 25 GLU 25 107 107 GLU GLU A . n A 1 26 GLU 26 108 108 GLU GLU A . n A 1 27 SER 27 109 109 SER SER A . n A 1 28 ASP 28 110 110 ASP ASP A . n A 1 29 THR 29 111 111 THR THR A . n A 1 30 ILE 30 112 112 ILE ILE A . n A 1 31 THR 31 113 113 THR THR A . n A 1 32 LYS 32 114 114 LYS LYS A . n A 1 33 LEU 33 115 115 LEU LEU A . n A 1 34 TRP 34 116 116 TRP TRP A . n A 1 35 GLN 35 117 117 GLN GLN A . n A 1 36 THR 36 118 118 THR THR A . n A 1 37 SER 37 119 119 SER SER A . n A 1 38 LEU 38 120 120 LEU LEU A . n A 1 39 TRP 39 121 121 TRP TRP A . n A 1 40 ASN 40 122 122 ASN ASN A . n A 1 41 ASN 41 123 123 ASN ASN A . n A 1 42 HIS 42 124 124 HIS HIS A . n A 1 43 ILE 43 125 125 ILE ILE A . n A 1 44 GLN 44 126 126 GLN GLN A . n A 1 45 ALA 45 127 127 ALA ALA A . n A 1 46 GLU 46 128 128 GLU GLU A . n A 1 47 ARG 47 129 129 ARG ARG A . n A 1 48 TYR 48 130 130 TYR TYR A . n A 1 49 MSE 49 131 131 MSE MSE A . n A 1 50 VAL 50 132 132 VAL VAL A . n A 1 51 ASP 51 133 133 ASP ASP A . n A 1 52 ASP 52 134 134 ASP ASP A . n A 1 53 ASN 53 135 135 ASN ASN A . n A 1 54 ARG 54 136 136 ARG ARG A . n A 1 55 ALA 55 137 137 ALA ALA A . n A 1 56 ILE 56 138 138 ILE ILE A . n A 1 57 PHE 57 139 139 PHE PHE A . n A 1 58 LEU 58 140 140 LEU LEU A . n A 1 59 PHE 59 141 141 PHE PHE A . n A 1 60 LYS 60 142 142 LYS LYS A . n A 1 61 ASP 61 143 143 ASP ASP A . n A 1 62 GLY 62 144 144 GLY GLY A . n A 1 63 THR 63 145 145 THR THR A . n A 1 64 GLN 64 146 146 GLN GLN A . n A 1 65 ALA 65 147 147 ALA ALA A . n A 1 66 TRP 66 148 148 TRP TRP A . n A 1 67 ASP 67 149 149 ASP ASP A . n A 1 68 ALA 68 150 150 ALA ALA A . n A 1 69 LYS 69 151 151 LYS LYS A . n A 1 70 ASP 70 152 152 ASP ASP A . n A 1 71 PHE 71 153 153 PHE PHE A . n A 1 72 LEU 72 154 154 LEU LEU A . n A 1 73 ILE 73 155 155 ILE ILE A . n A 1 74 GLU 74 156 156 GLU GLU A . n A 1 75 GLN 75 157 157 GLN GLN A . n A 1 76 GLU 76 158 158 GLU GLU A . n A 1 77 ARG 77 159 159 ARG ARG A . n A 1 78 CYS 78 160 160 CYS CYS A . n A 1 79 LYS 79 161 161 LYS LYS A . n A 1 80 GLY 80 162 162 GLY GLY A . n A 1 81 VAL 81 163 163 VAL VAL A . n A 1 82 THR 82 164 164 THR THR A . n A 1 83 ILE 83 165 165 ILE ILE A . n A 1 84 GLU 84 166 166 GLU GLU A . n A 1 85 ASN 85 167 167 ASN ASN A . n A 1 86 LYS 86 168 168 LYS LYS A . n A 1 87 GLU 87 169 169 GLU GLU A . n A 1 88 TYR 88 170 170 TYR TYR A . n A 1 89 PRO 89 171 171 PRO PRO A . n A 1 90 GLY 90 172 172 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 3 3 SO4 SO4 A . E 3 ACT 1 173 1 ACT ACT A . F 4 NA 1 174 1 NA NA A . G 5 HOH 1 4 4 HOH HOH A . G 5 HOH 2 5 5 HOH HOH A . G 5 HOH 3 6 6 HOH HOH A . G 5 HOH 4 7 7 HOH HOH A . G 5 HOH 5 8 8 HOH HOH A . G 5 HOH 6 9 9 HOH HOH A . G 5 HOH 7 10 10 HOH HOH A . G 5 HOH 8 11 11 HOH HOH A . G 5 HOH 9 12 12 HOH HOH A . G 5 HOH 10 13 13 HOH HOH A . G 5 HOH 11 14 14 HOH HOH A . G 5 HOH 12 15 15 HOH HOH A . G 5 HOH 13 16 16 HOH HOH A . G 5 HOH 14 17 17 HOH HOH A . G 5 HOH 15 18 18 HOH HOH A . G 5 HOH 16 19 19 HOH HOH A . G 5 HOH 17 20 20 HOH HOH A . G 5 HOH 18 21 21 HOH HOH A . G 5 HOH 19 22 22 HOH HOH A . G 5 HOH 20 23 23 HOH HOH A . G 5 HOH 21 24 24 HOH HOH A . G 5 HOH 22 25 25 HOH HOH A . G 5 HOH 23 26 26 HOH HOH A . G 5 HOH 24 27 27 HOH HOH A . G 5 HOH 25 28 28 HOH HOH A . G 5 HOH 26 29 29 HOH HOH A . G 5 HOH 27 30 30 HOH HOH A . G 5 HOH 28 31 31 HOH HOH A . G 5 HOH 29 32 32 HOH HOH A . G 5 HOH 30 33 33 HOH HOH A . G 5 HOH 31 34 34 HOH HOH A . G 5 HOH 32 35 35 HOH HOH A . G 5 HOH 33 36 36 HOH HOH A . G 5 HOH 34 37 37 HOH HOH A . G 5 HOH 35 38 38 HOH HOH A . G 5 HOH 36 39 39 HOH HOH A . G 5 HOH 37 40 40 HOH HOH A . G 5 HOH 38 41 41 HOH HOH A . G 5 HOH 39 42 42 HOH HOH A . G 5 HOH 40 43 43 HOH HOH A . G 5 HOH 41 44 44 HOH HOH A . G 5 HOH 42 45 45 HOH HOH A . G 5 HOH 43 46 46 HOH HOH A . G 5 HOH 44 47 47 HOH HOH A . G 5 HOH 45 48 48 HOH HOH A . G 5 HOH 46 49 49 HOH HOH A . G 5 HOH 47 51 51 HOH HOH A . G 5 HOH 48 52 52 HOH HOH A . G 5 HOH 49 53 53 HOH HOH A . G 5 HOH 50 54 54 HOH HOH A . G 5 HOH 51 55 55 HOH HOH A . G 5 HOH 52 56 56 HOH HOH A . G 5 HOH 53 57 57 HOH HOH A . G 5 HOH 54 58 58 HOH HOH A . G 5 HOH 55 59 59 HOH HOH A . G 5 HOH 56 60 60 HOH HOH A . G 5 HOH 57 61 61 HOH HOH A . G 5 HOH 58 62 62 HOH HOH A . G 5 HOH 59 63 63 HOH HOH A . G 5 HOH 60 64 64 HOH HOH A . G 5 HOH 61 65 65 HOH HOH A . G 5 HOH 62 66 66 HOH HOH A . G 5 HOH 63 67 67 HOH HOH A . G 5 HOH 64 68 68 HOH HOH A . G 5 HOH 65 69 69 HOH HOH A . G 5 HOH 66 70 70 HOH HOH A . G 5 HOH 67 72 72 HOH HOH A . G 5 HOH 68 73 73 HOH HOH A . G 5 HOH 69 74 74 HOH HOH A . G 5 HOH 70 75 75 HOH HOH A . G 5 HOH 71 76 76 HOH HOH A . G 5 HOH 72 77 77 HOH HOH A . G 5 HOH 73 78 78 HOH HOH A . G 5 HOH 74 175 1 HOH HOH A . G 5 HOH 75 176 2 HOH HOH A . G 5 HOH 76 177 3 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 88 ? MET SELENOMETHIONINE 2 A MSE 13 A MSE 95 ? MET SELENOMETHIONINE 3 A MSE 49 A MSE 131 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 1 ? B SO4 . 2 1 A NA 174 ? F NA . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low 40.000 _diffrn_reflns.pdbx_number_obs 13036 _diffrn_reflns.pdbx_Rmerge_I_obs 0.129 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.82 _diffrn_reflns.av_sigmaI_over_netI 20.64 _diffrn_reflns.pdbx_redundancy 11.10 _diffrn_reflns.pdbx_percent_possible_obs 99.00 _diffrn_reflns.number 144983 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.42 40.00 ? ? 0.064 ? 1.187 10.30 92.10 1 4.31 5.42 ? ? 0.063 ? 1.240 10.90 98.20 1 3.76 4.31 ? ? 0.073 ? 1.336 11.00 98.50 1 3.42 3.76 ? ? 0.083 ? 1.127 11.20 98.50 1 3.17 3.42 ? ? 0.092 ? 0.954 11.50 99.10 1 2.99 3.17 ? ? 0.103 ? 0.890 11.50 99.20 1 2.84 2.99 ? ? 0.117 ? 0.855 11.70 99.20 1 2.71 2.84 ? ? 0.158 ? 0.815 11.80 99.40 1 2.61 2.71 ? ? 0.207 ? 0.927 11.60 99.20 1 2.52 2.61 ? ? 0.273 ? 0.844 11.70 99.70 1 2.44 2.52 ? ? 0.258 ? 0.759 11.60 99.70 1 2.37 2.44 ? ? 0.281 ? 0.752 11.70 99.70 1 2.31 2.37 ? ? 0.268 ? 0.621 11.60 99.70 1 2.25 2.31 ? ? 0.369 ? 0.701 11.50 99.70 1 2.20 2.25 ? ? 0.396 ? 0.618 11.10 99.70 1 2.15 2.20 ? ? 0.319 ? 0.573 10.80 99.80 1 2.11 2.15 ? ? 0.389 ? 0.534 10.70 99.90 1 2.07 2.11 ? ? 0.416 ? 0.543 10.40 99.80 1 2.03 2.07 ? ? 0.433 ? 0.528 10.10 99.80 1 2.00 2.03 ? ? 0.430 ? 0.567 9.80 100.00 # _pdbx_phasing_dm.entry_id 3OFF _pdbx_phasing_dm.fom_acentric 0.650 _pdbx_phasing_dm.fom_centric 0.680 _pdbx_phasing_dm.fom 0.660 _pdbx_phasing_dm.reflns_acentric 5192 _pdbx_phasing_dm.reflns_centric 1359 _pdbx_phasing_dm.reflns 6551 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.700 29.419 ? ? 0.930 0.850 0.890 174 168 342 3.600 5.700 ? ? 0.930 0.840 0.900 695 285 980 2.900 3.600 ? ? 0.850 0.740 0.820 934 266 1200 2.500 2.900 ? ? 0.700 0.690 0.700 868 187 1055 2.100 2.500 ? ? 0.550 0.550 0.550 1522 284 1806 2.000 2.100 ? ? 0.340 0.370 0.340 999 169 1168 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE 2.13 24-Feb-2008 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE 2.13 6-Mar-2008 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 MAR345 software ? ? ? ? 'data collection' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 89 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -102.96 _pdbx_validate_torsion.psi -61.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 89 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 89 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 89 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 89 ? NZ ? A LYS 7 NZ 5 1 Y 1 A LYS 90 ? CG ? A LYS 8 CG 6 1 Y 1 A LYS 90 ? CD ? A LYS 8 CD 7 1 Y 1 A LYS 90 ? CE ? A LYS 8 CE 8 1 Y 1 A LYS 90 ? NZ ? A LYS 8 NZ 9 1 Y 1 A ARG 92 ? CD ? A ARG 10 CD 10 1 Y 1 A ARG 92 ? NE ? A ARG 10 NE 11 1 Y 1 A ARG 92 ? CZ ? A ARG 10 CZ 12 1 Y 1 A ARG 92 ? NH1 ? A ARG 10 NH1 13 1 Y 1 A ARG 92 ? NH2 ? A ARG 10 NH2 14 1 Y 1 A GLU 107 ? CG ? A GLU 25 CG 15 1 Y 1 A GLU 107 ? CD ? A GLU 25 CD 16 1 Y 1 A GLU 107 ? OE1 ? A GLU 25 OE1 17 1 Y 1 A GLU 107 ? OE2 ? A GLU 25 OE2 18 1 Y 1 A ARG 136 ? CZ ? A ARG 54 CZ 19 1 Y 1 A ARG 136 ? NH1 ? A ARG 54 NH1 20 1 Y 1 A ARG 136 ? NH2 ? A ARG 54 NH2 21 1 Y 1 A LYS 142 ? CG ? A LYS 60 CG 22 1 Y 1 A LYS 142 ? CD ? A LYS 60 CD 23 1 Y 1 A LYS 142 ? CE ? A LYS 60 CE 24 1 Y 1 A LYS 142 ? NZ ? A LYS 60 NZ 25 1 Y 1 A ASN 167 ? CG ? A ASN 85 CG 26 1 Y 1 A ASN 167 ? OD1 ? A ASN 85 OD1 27 1 Y 1 A ASN 167 ? ND2 ? A ASN 85 ND2 28 1 Y 1 A GLU 169 ? CG ? A GLU 87 CG 29 1 Y 1 A GLU 169 ? CD ? A GLU 87 CD 30 1 Y 1 A GLU 169 ? OE1 ? A GLU 87 OE1 31 1 Y 1 A GLU 169 ? OE2 ? A GLU 87 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 83 ? A GLY 1 2 1 Y 1 A SER 84 ? A SER 2 3 1 Y 1 A GLN 85 ? A GLN 3 4 1 Y 1 A LYS 86 ? A LYS 4 5 1 Y 1 A HIS 87 ? A HIS 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'ACETATE ION' ACT 4 'SODIUM ION' NA 5 water HOH #