HEADER HYDROLASE 17-AUG-10 3OGR TITLE COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI WITH TITLE 2 GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODERMA REESEI; SOURCE 3 ORGANISM_COMMON: HYPOCREA JECORINA; SOURCE 4 ORGANISM_TAXID: 51453 KEYWDS TIM BARREL DOMAIN, GLYCOSIDE HYDROLASE, FAMILY 35, GLYCOPROTEIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MAKSIMAINEN,J.ROUVINEN REVDAT 5 16-OCT-24 3OGR 1 REMARK REVDAT 4 01-NOV-23 3OGR 1 HETSYN REVDAT 3 29-JUL-20 3OGR 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-MAY-11 3OGR 1 JRNL REVDAT 1 16-MAR-11 3OGR 0 JRNL AUTH M.MAKSIMAINEN,N.HAKULINEN,J.M.KALLIO,T.TIMOHARJU,O.TURUNEN, JRNL AUTH 2 J.ROUVINEN JRNL TITL CRYSTAL STRUCTURES OF TRICHODERMA REESEI BETA-GALACTOSIDASE JRNL TITL 2 REVEAL CONFORMATIONAL CHANGES IN THE ACTIVE SITE JRNL REF J.STRUCT.BIOL. V. 174 156 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21130883 JRNL DOI 10.1016/J.JSB.2010.11.024 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 170633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12348 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 650 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 267 REMARK 3 SOLVENT ATOMS : 1031 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : -0.69000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8066 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11012 ; 1.977 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 967 ; 6.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 344 ;35.408 ;23.605 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;12.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1249 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6253 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8066 ; 2.625 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1077 ; 9.742 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7920 ; 4.482 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 179614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.430 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3OG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 GLY A 24 REMARK 465 LEU A 25 REMARK 465 HIS A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 ARG A 29 REMARK 465 PRO A 30 REMARK 465 ARG A 31 REMARK 465 ASP A 32 REMARK 465 ILE A 33 REMARK 465 ILE A 34 REMARK 465 LEU A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1610 O HOH A 2062 2.04 REMARK 500 O HOH A 1585 O HOH A 2064 2.09 REMARK 500 NE ARG A 110 O HOH A 2064 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 82 CG PHE A 82 CD2 0.104 REMARK 500 PHE A 82 CG PHE A 82 CD2 0.120 REMARK 500 PHE A 82 CD1 PHE A 82 CE1 0.138 REMARK 500 PHE A 82 CE2 PHE A 82 CD2 0.170 REMARK 500 GLU A 118 CD GLU A 118 OE1 0.074 REMARK 500 GLU A 118 CD GLU A 118 OE2 0.069 REMARK 500 SER A 270 CA SER A 270 CB -0.146 REMARK 500 SER A 270 CA SER A 270 CB -0.146 REMARK 500 SER A 270 CB SER A 270 OG -0.123 REMARK 500 LYS A 500 CD LYS A 500 CE 0.160 REMARK 500 LYS A 500 CE LYS A 500 NZ 0.160 REMARK 500 TRP A 551 CE3 TRP A 551 CZ3 -0.129 REMARK 500 SER A 555 CB SER A 555 OG -0.177 REMARK 500 SER A 555 CB SER A 555 OG -0.092 REMARK 500 SER A 555 C ALA A 556 N 0.155 REMARK 500 SER A 555 C ALA A 556 N 0.166 REMARK 500 GLU A 862 CB GLU A 862 CG -0.134 REMARK 500 GLU A 862 CD GLU A 862 OE2 -0.068 REMARK 500 GLU A 919 CD GLU A 919 OE1 0.086 REMARK 500 TYR A 942 CE2 TYR A 942 CD2 0.119 REMARK 500 ILE A 976 CB ILE A 976 CG2 0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 82 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PHE A 82 CB - CG - CD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 152 CB - CG - CD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU A 262 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 PHE A 323 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 325 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 SER A 555 CA - C - O ANGL. DEV. = -60.1 DEGREES REMARK 500 SER A 555 O - C - N ANGL. DEV. = 49.7 DEGREES REMARK 500 ARG A 572 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR A 576 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 706 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 766 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR A 942 CG - CD2 - CE2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 969 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 38.68 -145.95 REMARK 500 ASN A 140 -103.65 67.41 REMARK 500 GLU A 198 -168.44 63.98 REMARK 500 SER A 289 66.63 -150.36 REMARK 500 ASN A 320 -165.79 -101.61 REMARK 500 ASN A 352 19.54 58.40 REMARK 500 TYR A 359 -160.43 -123.87 REMARK 500 GLU A 423 -17.98 -140.31 REMARK 500 ASN A 519 103.82 -25.09 REMARK 500 ASN A 765 -121.88 52.46 REMARK 500 ASP A 816 49.55 -79.69 REMARK 500 ASP A 851 58.78 -91.03 REMARK 500 SER A 888 17.58 49.36 REMARK 500 ASN A 971 59.46 -141.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OG2 RELATED DB: PDB REMARK 900 NATIVE STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI REMARK 900 RELATED ID: 3OGS RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI REMARK 900 WITH IPTG REMARK 900 RELATED ID: 3OGV RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF BETA-GALACTOSIDASE FROM TRICHODERMA REESEI REMARK 900 WITH PETG DBREF 3OGR A 21 1023 UNP Q70SY0 Q70SY0_TRIRE 21 1023 SEQRES 1 A 1003 THR SER ILE GLY LEU HIS GLY GLY ARG PRO ARG ASP ILE SEQRES 2 A 1003 ILE LEU ASP ASP ALA LYS GLY PRO LEU GLN ASN ILE VAL SEQRES 3 A 1003 THR TRP ASP GLU HIS SER LEU PHE VAL HIS GLY GLU ARG SEQRES 4 A 1003 VAL VAL ILE PHE SER GLY GLU VAL HIS PRO PHE ARG LEU SEQRES 5 A 1003 PRO VAL PRO SER LEU TYR LEU ASP VAL PHE HIS LYS ILE SEQRES 6 A 1003 LYS ALA LEU GLY PHE ASN THR VAL SER PHE TYR VAL ASP SEQRES 7 A 1003 TRP ALA LEU LEU GLU GLY LYS PRO GLY ARG PHE ARG ALA SEQRES 8 A 1003 ASP GLY ILE PHE SER LEU GLU PRO PHE PHE GLU ALA ALA SEQRES 9 A 1003 THR LYS ALA GLY ILE TYR LEU LEU ALA ARG PRO GLY PRO SEQRES 10 A 1003 TYR ILE ASN ALA GLU VAL SER GLY GLY GLY PHE PRO GLY SEQRES 11 A 1003 TRP LEU GLN ARG VAL LYS GLY LYS LEU ARG THR ASP ALA SEQRES 12 A 1003 PRO ASP TYR LEU HIS ALA THR ASP ASN TYR VAL ALA HIS SEQRES 13 A 1003 ILE ALA SER ILE ILE ALA LYS ALA GLN ILE THR ASN GLY SEQRES 14 A 1003 GLY PRO VAL ILE LEU TYR GLN PRO GLU ASN GLU TYR SER SEQRES 15 A 1003 GLY ALA ALA GLU GLY VAL LEU PHE PRO ASN LYS PRO TYR SEQRES 16 A 1003 MET GLN TYR VAL ILE ASP GLN ALA ARG ASN ALA GLY ILE SEQRES 17 A 1003 ILE VAL PRO LEU ILE ASN ASN ASP ALA PHE PRO GLY GLY SEQRES 18 A 1003 THR GLY ALA PRO GLY THR GLY LEU GLY SER VAL ASP ILE SEQRES 19 A 1003 TYR GLY HIS ASP GLY TYR PRO LEU GLY PHE ASP CYS ALA SEQRES 20 A 1003 HIS PRO SER ALA TRP PRO ASP ASN GLY LEU PRO THR THR SEQRES 21 A 1003 TRP ARG GLN ASP HIS LEU ASN ILE SER PRO SER THR PRO SEQRES 22 A 1003 PHE SER LEU VAL GLU PHE GLN GLY GLY ALA PHE ASP PRO SEQRES 23 A 1003 PHE GLY GLY TRP GLY PHE GLU GLN CYS SER ALA LEU VAL SEQRES 24 A 1003 ASN HIS GLU PHE GLU ARG VAL PHE TYR LYS ASN ASN MET SEQRES 25 A 1003 ALA ALA GLY VAL THR ILE PHE ASN ILE TYR MET THR PHE SEQRES 26 A 1003 GLY GLY THR ASN TRP GLY ASN LEU GLY HIS PRO GLY GLY SEQRES 27 A 1003 TYR THR SER TYR ASP TYR GLY ALA SER ILE ARG GLU ASP SEQRES 28 A 1003 ARG ARG ILE ASP ARG GLU LYS TYR SER GLU LEU LYS LEU SEQRES 29 A 1003 GLN GLY GLN PHE LEU LYS VAL SER PRO GLY TYR ILE THR SEQRES 30 A 1003 ALA THR PRO GLU ASN ALA THR GLN GLY VAL TYR SER ASP SEQRES 31 A 1003 SER GLN ASN ILE VAL ILE THR PRO LEU LEU ALA LYS GLU SEQRES 32 A 1003 SER GLY ASP PHE PHE VAL VAL ARG HIS ALA ASN TYR SER SEQRES 33 A 1003 SER THR ASP THR ALA SER TYR THR VAL LYS LEU PRO THR SEQRES 34 A 1003 SER ALA GLY ASP LEU THR ILE PRO GLN LEU GLY GLY SER SEQRES 35 A 1003 LEU THR LEU THR GLY ARG ASP SER LYS ILE HIS VAL THR SEQRES 36 A 1003 ASP TYR PRO VAL GLY LYS PHE THR LEU LEU TYR SER THR SEQRES 37 A 1003 ALA GLU ILE PHE THR TRP ASN GLU PHE ALA GLU LYS THR SEQRES 38 A 1003 VAL LEU VAL LEU TYR GLY GLY ALA GLN GLU LEU HIS GLU SEQRES 39 A 1003 PHE ALA VAL LYS ASN PRO PHE GLY SER SER LYS THR ALA SEQRES 40 A 1003 LYS ALA LYS LYS ILE GLU GLY SER ASN VAL THR ILE HIS SEQRES 41 A 1003 THR THR SER ASN LEU THR VAL VAL LEU GLN TRP THR ALA SEQRES 42 A 1003 SER SER ALA ARG GLN VAL VAL GLN LEU GLY SER LEU VAL SEQRES 43 A 1003 ILE TYR MET VAL ASP ARG ASN SER ALA TYR ASN TYR TRP SEQRES 44 A 1003 VAL PRO THR LEU PRO GLY SER GLY LYS GLN SER ALA TYR SEQRES 45 A 1003 GLY SER SER LEU MET ASN PRO ASP SER VAL ILE ILE ASN SEQRES 46 A 1003 GLY GLY TYR LEU ILE ARG SER VAL ALA ILE LYS GLY ASN SEQRES 47 A 1003 ALA LEU SER VAL GLN ALA ASP PHE ASN VAL THR THR PRO SEQRES 48 A 1003 LEU GLU ILE ILE GLY ILE PRO LYS GLY ILE SER LYS LEU SEQRES 49 A 1003 ALA VAL ASN GLY LYS GLU LEU GLY TYR SER VAL SER GLU SEQRES 50 A 1003 LEU GLY ASP TRP ILE ALA HIS PRO ALA ILE GLU ILE PRO SEQRES 51 A 1003 HIS VAL GLN VAL PRO GLU LEU THR LYS LEU LYS TRP TYR SEQRES 52 A 1003 LYS VAL ASP SER LEU PRO GLU ILE ARG SER ASN TYR ASP SEQRES 53 A 1003 ASP SER ARG TRP PRO LEU ALA ASN LEU ARG THR SER ASN SEQRES 54 A 1003 ASN THR TYR ALA PRO LEU LYS THR PRO VAL SER LEU TYR SEQRES 55 A 1003 GLY SER ASP TYR GLY PHE HIS ALA GLY THR LEU LEU PHE SEQRES 56 A 1003 ARG GLY ARG PHE THR ALA ARG THR ALA ARG GLN GLN LEU SEQRES 57 A 1003 PHE LEU SER THR GLN GLY GLY SER ALA PHE ALA SER SER SEQRES 58 A 1003 VAL TRP LEU ASN ASP ARG PHE ILE GLY SER PHE THR GLY SEQRES 59 A 1003 PHE ASP ALA ALA SER ALA ALA ASN SER SER TYR THR LEU SEQRES 60 A 1003 ASP ARG LEU VAL ARG GLY ARG ARG TYR ILE LEU THR VAL SEQRES 61 A 1003 VAL VAL ASP SER THR GLY LEU ASP GLU ASN TRP THR THR SEQRES 62 A 1003 GLY ASP ASP SER MET LYS ALA PRO ARG GLY ILE LEU ASP SEQRES 63 A 1003 TYR ALA LEU THR SER SER SER GLY ALA ASN VAL SER ILE SEQRES 64 A 1003 SER TRP LYS LEU THR GLY ASN LEU GLY GLY GLU ASP TYR SEQRES 65 A 1003 ARG ASP VAL PHE ARG GLY PRO LEU ASN GLU GLY GLY LEU SEQRES 66 A 1003 PHE PHE GLU ARG GLN GLY PHE HIS LEU PRO SER PRO PRO SEQRES 67 A 1003 LEU SER ASP PHE THR HIS GLY PRO SER SER SER SER SER SEQRES 68 A 1003 SER SER SER PRO LEU ASP GLY ILE ALA HIS ALA GLY ILE SEQRES 69 A 1003 ALA PHE TYR ALA ALA LYS LEU PRO LEU HIS LEU PRO ALA SEQRES 70 A 1003 GLN GLU TYR ASP ILE PRO LEU SER PHE VAL PHE ASP ASN SEQRES 71 A 1003 ALA THR ALA ALA ALA PRO TYR ARG ALA LEU LEU TYR VAL SEQRES 72 A 1003 ASN GLY PHE GLN TYR GLY LYS TYR VAL SER ASN ILE GLY SEQRES 73 A 1003 PRO GLN THR GLU PHE PRO VAL PRO GLU GLY ILE LEU ASP SEQRES 74 A 1003 TYR ASN GLY ASP ASN TRP ILE GLY VAL ALA LEU TRP ALA SEQRES 75 A 1003 LEU GLU SER ARG GLY ALA LYS VAL PRO GLY LEU ALA LEU SEQRES 76 A 1003 LYS SER LYS SER PRO ILE LEU THR GLY ARG GLU ARG VAL SEQRES 77 A 1003 GLU VAL VAL LYS GLY PRO HIS PHE LYS LYS ARG HIS GLY SEQRES 78 A 1003 ALA TYR MODRES 3OGR ASN A 782 ASN GLYCOSYLATION SITE MODRES 3OGR ASN A 627 ASN GLYCOSYLATION SITE MODRES 3OGR ASN A 434 ASN GLYCOSYLATION SITE MODRES 3OGR ASN A 709 ASN GLYCOSYLATION SITE MODRES 3OGR ASN A 930 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET GLC C 7 11 HET MAN C 8 11 HET MAN C 9 11 HET MAN C 10 11 HET NAG D 1 14 HET NAG D 2 14 HET GAL A1024 12 HET NAG A1042 14 HET NAG A1043 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 10(C6 H12 O6) FORMUL 3 GLC C6 H12 O6 FORMUL 5 GAL C6 H12 O6 FORMUL 8 HOH *1031(H2 O) HELIX 1 1 PRO A 69 LEU A 72 5 4 HELIX 2 2 VAL A 74 SER A 76 5 3 HELIX 3 3 LEU A 77 LEU A 88 1 12 HELIX 4 4 ASP A 98 GLU A 103 1 6 HELIX 5 5 ASP A 112 SER A 116 5 5 HELIX 6 6 LEU A 117 GLY A 128 1 12 HELIX 7 7 VAL A 143 PHE A 148 5 6 HELIX 8 8 PRO A 149 VAL A 155 5 7 HELIX 9 9 ALA A 163 ALA A 184 1 22 HELIX 10 10 GLN A 185 GLY A 189 5 5 HELIX 11 11 ASN A 212 ALA A 226 1 15 HELIX 12 12 THR A 280 SER A 289 1 10 HELIX 13 13 GLY A 311 VAL A 319 1 9 HELIX 14 14 ASN A 320 ALA A 334 1 15 HELIX 15 15 ARG A 376 VAL A 391 1 16 HELIX 16 16 PRO A 393 ALA A 398 1 6 HELIX 17 17 ARG A 572 TYR A 576 1 5 HELIX 18 18 GLN A 589 GLY A 593 5 5 HELIX 19 19 GLU A 676 LEU A 680 5 5 HELIX 20 20 LEU A 688 ARG A 692 5 5 HELIX 21 21 TYR A 722 GLY A 727 5 6 HELIX 22 22 ASP A 816 ALA A 820 5 5 HELIX 23 23 LEU A 865 GLN A 870 1 6 HELIX 24 24 PRO A 878 PHE A 882 5 5 SHEET 1 A 3 VAL A 46 TRP A 48 0 SHEET 2 A 3 LEU A 53 VAL A 55 -1 O PHE A 54 N THR A 47 SHEET 3 A 3 GLU A 58 VAL A 60 -1 O GLU A 58 N VAL A 55 SHEET 1 B 7 VAL A 192 PRO A 197 0 SHEET 2 B 7 TYR A 130 GLY A 136 1 N ALA A 133 O GLN A 196 SHEET 3 B 7 THR A 92 TYR A 96 1 N VAL A 93 O LEU A 132 SHEET 4 B 7 ILE A 62 VAL A 67 1 N VAL A 67 O SER A 94 SHEET 5 B 7 ILE A 338 PHE A 345 1 O PHE A 339 N SER A 64 SHEET 6 B 7 SER A 295 GLN A 300 1 N LEU A 296 O ILE A 338 SHEET 7 B 7 GLY A 256 GLY A 259 1 N GLY A 259 O GLN A 300 SHEET 1 C 8 THR A 399 PRO A 400 0 SHEET 2 C 8 ILE A 414 LEU A 420 -1 O LEU A 420 N THR A 399 SHEET 3 C 8 ASP A 426 HIS A 432 -1 O PHE A 427 N LEU A 419 SHEET 4 C 8 SER A 470 VAL A 479 -1 O LYS A 471 N VAL A 430 SHEET 5 C 8 PHE A 482 SER A 487 -1 O PHE A 482 N VAL A 479 SHEET 6 C 8 LEU A 512 VAL A 517 -1 O ALA A 516 N TYR A 486 SHEET 7 C 8 VAL A 547 THR A 552 -1 O TRP A 551 N HIS A 513 SHEET 8 C 8 THR A 538 THR A 541 -1 N HIS A 540 O VAL A 548 SHEET 1 D 2 ALA A 441 TYR A 443 0 SHEET 2 D 2 LEU A 463 LEU A 465 -1 O LEU A 463 N TYR A 443 SHEET 1 E 2 VAL A 445 LEU A 447 0 SHEET 2 E 2 LEU A 454 ILE A 456 -1 O ILE A 456 N VAL A 445 SHEET 1 F 5 GLU A 490 GLU A 496 0 SHEET 2 F 5 THR A 501 GLY A 507 -1 O VAL A 502 N ASN A 495 SHEET 3 F 5 LEU A 565 ASP A 571 1 O TYR A 568 N LEU A 503 SHEET 4 F 5 GLN A 558 LEU A 562 -1 N LEU A 562 O LEU A 565 SHEET 5 F 5 LYS A 530 GLU A 533 -1 N LYS A 530 O GLN A 561 SHEET 1 G 5 TYR A 578 TRP A 579 0 SHEET 2 G 5 ILE A 603 ASN A 605 -1 O ILE A 604 N TRP A 579 SHEET 3 G 5 LEU A 632 ILE A 635 -1 O ILE A 635 N ILE A 603 SHEET 4 G 5 TRP A 661 ALA A 663 -1 O ALA A 663 N LEU A 632 SHEET 5 G 5 SER A 654 VAL A 655 -1 N SER A 654 O ILE A 662 SHEET 1 H 4 LEU A 609 LYS A 616 0 SHEET 2 H 4 ALA A 619 ASP A 625 -1 O SER A 621 N ALA A 614 SHEET 3 H 4 LYS A 643 VAL A 646 1 O ALA A 645 N VAL A 622 SHEET 4 H 4 LYS A 649 LEU A 651 -1 O LYS A 649 N VAL A 646 SHEET 1 I 5 TYR A 683 ASP A 686 0 SHEET 2 I 5 GLY A 903 HIS A 914 -1 O ALA A 908 N TYR A 683 SHEET 3 I 5 ASN A 971 ALA A 982 -1 O LEU A 980 N ALA A 905 SHEET 4 I 5 TYR A 937 VAL A 943 -1 N ARG A 938 O TRP A 981 SHEET 5 I 5 PHE A 946 VAL A 952 -1 O TYR A 948 N LEU A 941 SHEET 1 J 5 ARG A 767 PHE A 772 0 SHEET 2 J 5 SER A 760 LEU A 764 -1 N SER A 760 O PHE A 772 SHEET 3 J 5 ARG A 795 VAL A 802 -1 O VAL A 801 N SER A 761 SHEET 4 J 5 LEU A 733 THR A 740 -1 N LEU A 733 O VAL A 802 SHEET 5 J 5 SER A 840 THR A 844 -1 O SER A 840 N ARG A 738 SHEET 1 K 3 ALA A 780 LEU A 787 0 SHEET 2 K 3 GLN A 746 GLN A 753 -1 N GLN A 746 O LEU A 787 SHEET 3 K 3 GLY A 823 SER A 831 -1 O ALA A 828 N PHE A 749 SHEET 1 L 2 TYR A 920 ASP A 921 0 SHEET 2 L 2 ILE A1001 LEU A1002 -1 O ILE A1001 N ASP A 921 SHEET 1 M 3 GLU A 960 VAL A 963 0 SHEET 2 M 3 LEU A 924 PHE A 928 -1 N PHE A 926 O PHE A 961 SHEET 3 M 3 LEU A 993 SER A 997 -1 O ALA A 994 N VAL A 927 SSBOND 1 CYS A 266 CYS A 315 1555 1555 2.25 LINK ND2 ASN A 434 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 627 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 709 C1 NAG A1042 1555 1555 1.45 LINK ND2 ASN A 782 C1 NAG A1043 1555 1555 1.43 LINK ND2 ASN A 930 C1 NAG C 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.41 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.41 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.43 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 8 1555 1555 1.48 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.42 LINK O2 MAN C 5 C1 MAN C 6 1555 1555 1.47 LINK O3 MAN C 6 C1 GLC C 7 1555 1555 1.45 LINK O3 MAN C 8 C1 MAN C 9 1555 1555 1.43 LINK O6 MAN C 8 C1 MAN C 10 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 GLY A 136 PRO A 137 0 10.66 CISPEP 2 PHE A 210 PRO A 211 0 -12.22 CISPEP 3 TYR A 342 MET A 343 0 -13.33 CISPEP 4 ILE A 456 PRO A 457 0 6.78 CISPEP 5 GLY A 956 PRO A 957 0 9.68 CRYST1 67.430 69.280 81.500 109.03 97.34 114.38 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014830 0.006721 0.005209 0.00000 SCALE2 0.000000 0.015847 0.007320 0.00000 SCALE3 0.000000 0.000000 0.013627 0.00000