HEADER DNA 19-AUG-10 3OIE TITLE CRYSTAL STRUCTURE OF THE DB1880-D(CGCGAATTCGCG)2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: A2T2 DUPLEX SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS NUCLEIC ACIDS, DNA, DOUBLE HELIX, MINOR GROOVE, DNA MINOR GROOVE KEYWDS 2 BINDER, DNA MINOR GROOVE-LIGAND COMPLEX, DB1880, A2T2, DICKERSON AND KEYWDS 3 DREW DODECAMER, CRYSTAL STRUCTURE OF B-DNA, DNA-DRUG COMPLEX, KEYWDS 4 MAGNESIUM-WATER COMPLEX, HYDRATED MAGNESIUM, DNA HYDRATION EXPDTA X-RAY DIFFRACTION AUTHOR S.LIN,S.NEIDLE,N.CAMPBELL REVDAT 3 21-FEB-24 3OIE 1 REMARK LINK REVDAT 2 09-FEB-11 3OIE 1 SOURCE REVDAT 1 19-JAN-11 3OIE 0 JRNL AUTH S.LIN,S.NEIDLE,N.CAMPBELL JRNL TITL CRYSTAL STRUCTURE OF THE DB1880-D(CGCGAATTCGCG)2 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 4962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 229 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.233 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 599 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 911 ; 3.031 ; 3.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 96 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 301 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 599 ; 2.505 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 911 ; 3.294 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3OIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 33.228 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : 0.13000 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, DNA, COMPOUND, REMARK 280 DB1880, MPD, SODIUM CACODYLATE BUFFER, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.05700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.20850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.05700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.20850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 16 O HOH B 7 4565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 O3' DG A 2 C3' -0.045 REMARK 500 DC A 3 O3' DC A 3 C3' -0.060 REMARK 500 DT A 8 C5 DT A 8 C7 0.054 REMARK 500 DC B 13 O3' DC B 13 C3' -0.052 REMARK 500 DC B 15 O3' DC B 15 C3' -0.053 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = 4.1 DEGREES REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DA A 5 N1 - C6 - N6 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA A 6 N1 - C6 - N6 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT A 8 OP1 - P - OP2 ANGL. DEV. = 13.1 DEGREES REMARK 500 DT A 8 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG A 10 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC A 11 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG A 12 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B 13 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 14 OP1 - P - OP2 ANGL. DEV. = 9.1 DEGREES REMARK 500 DG B 14 O5' - P - OP2 ANGL. DEV. = -7.5 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG B 14 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA B 17 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT B 19 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT B 20 C3' - C2' - C1' ANGL. DEV. = -7.1 DEGREES REMARK 500 DT B 20 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT B 20 C4 - C5 - C7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT B 20 C6 - C5 - C7 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG B 22 O3' - P - OP2 ANGL. DEV. = 8.2 DEGREES REMARK 500 DG B 22 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 22 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG B 22 C5 - C6 - O6 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG B 22 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B 23 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 DG B 24 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 13 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 24 O REMARK 620 2 HOH A 26 O 88.0 REMARK 620 3 HOH A 27 O 94.4 83.8 REMARK 620 4 HOH B 27 O 172.2 84.4 83.3 REMARK 620 5 HOH B 38 O 103.6 164.4 105.3 84.2 REMARK 620 6 HOH B 39 O 107.6 89.9 156.8 73.9 76.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 881 B 1 DBREF 3OIE A 1 12 PDB 3OIE 3OIE 1 12 DBREF 3OIE B 13 24 PDB 3OIE 3OIE 13 24 SEQRES 1 A 12 DC DG DC DG DA DA DT DT DC DG DC DG SEQRES 1 B 12 DC DG DC DG DA DA DT DT DC DG DC DG HET MG A 13 1 HET 881 B 1 49 HETNAM MG MAGNESIUM ION HETNAM 881 N',N''-{FURAN-2,5-DIYLBIS[3-(PIPERIDIN-4-YLOXY)BENZENE- HETNAM 2 881 4,1-DIYL]}DIPYRIDINE-2-CARBOXIMIDAMIDE HETSYN 881 DB1880 FORMUL 3 MG MG 2+ FORMUL 4 881 C38 H40 N8 O3 FORMUL 5 HOH *136(H2 O) LINK MG MG A 13 O HOH A 24 1555 1555 2.02 LINK MG MG A 13 O HOH A 26 1555 1555 2.12 LINK MG MG A 13 O HOH A 27 1555 1555 2.22 LINK MG MG A 13 O HOH B 27 1555 1555 2.31 LINK MG MG A 13 O HOH B 38 1555 1555 1.95 LINK MG MG A 13 O HOH B 39 1555 1555 2.20 SITE 1 AC1 6 HOH A 24 HOH A 26 HOH A 27 HOH B 27 SITE 2 AC1 6 HOH B 38 HOH B 39 SITE 1 AC2 18 DA A 6 DT A 7 DT A 8 DC A 9 SITE 2 AC2 18 DG A 10 DC A 11 DG A 12 HOH A 114 SITE 3 AC2 18 HOH B 5 DG B 16 DA B 17 DA B 18 SITE 4 AC2 18 DT B 19 DT B 20 DC B 21 DC B 23 SITE 5 AC2 18 DG B 24 HOH B 40 CRYST1 24.114 38.417 66.205 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015105 0.00000 TER 244 DG A 12 TER 488 DG B 24 HETATM 489 MG MG A 13 14.153 26.874 21.383 1.00 35.37 MG HETATM 490 NAA 881 B 1 10.148 20.292 13.126 1.00 19.43 N HETATM 491 NAB 881 B 1 11.215 23.757 1.141 1.00 24.58 N HETATM 492 CAC 881 B 1 8.627 16.186 15.637 1.00 20.32 C HETATM 493 CAD 881 B 1 15.308 24.539 -1.436 1.00 15.10 C HETATM 494 CAE 881 B 1 9.876 16.760 15.550 1.00 24.79 C HETATM 495 CAF 881 B 1 15.521 25.164 -0.200 1.00 16.77 C HETATM 496 CAG 881 B 1 7.581 16.699 14.932 1.00 21.16 C HETATM 497 CAH 881 B 1 14.107 23.837 -1.661 1.00 15.27 C HETATM 498 CAI 881 B 1 10.029 17.905 14.750 1.00 22.26 C HETATM 499 CAJ 881 B 1 14.576 25.106 0.817 1.00 14.84 C HETATM 500 CAK 881 B 1 8.890 21.024 10.577 1.00 12.83 C HETATM 501 CAL 881 B 1 11.599 23.905 4.817 1.00 16.14 C HETATM 502 CAM 881 B 1 6.869 24.857 8.136 1.00 13.34 C HETATM 503 CAN 881 B 1 7.386 25.442 7.023 1.00 15.82 C HETATM 504 CAO 881 B 1 8.815 22.010 9.607 1.00 11.11 C HETATM 505 CAP 881 B 1 10.566 23.914 5.757 1.00 14.57 C HETATM 506 CAQ 881 B 1 6.826 21.696 11.426 1.00 16.31 C HETATM 507 CAR 881 B 1 10.572 25.711 3.649 1.00 17.56 C HETATM 508 CAS 881 B 1 3.216 22.318 9.056 1.00 29.37 C HETATM 509 CAT 881 B 1 2.927 24.729 9.666 1.00 30.06 C HETATM 510 CAU 881 B 1 9.287 29.482 5.036 1.00 14.49 C HETATM 511 CAV 881 B 1 6.839 28.993 4.973 1.00 13.76 C HETATM 512 CAW 881 B 1 3.560 22.087 10.542 1.00 28.37 C HETATM 513 CAX 881 B 1 3.399 24.374 11.112 1.00 29.32 C HETATM 514 CAY 881 B 1 9.479 28.836 3.664 1.00 18.48 C HETATM 515 CAZ 881 B 1 7.018 28.378 3.608 1.00 15.14 C HETATM 516 NBA 881 B 1 7.752 17.783 14.169 1.00 23.29 N HETATM 517 NBB 881 B 1 13.194 23.820 -0.675 1.00 19.05 N HETATM 518 NBC 881 B 1 2.388 23.546 8.932 1.00 32.55 N HETATM 519 NBD 881 B 1 7.891 30.034 5.171 1.00 17.35 N HETATM 520 NBE 881 B 1 8.003 19.869 12.501 1.00 14.13 N HETATM 521 NBF 881 B 1 12.551 24.792 2.792 1.00 18.80 N HETATM 522 OBG 881 B 1 5.584 23.519 10.341 1.00 20.86 O HETATM 523 OBH 881 B 1 8.556 26.671 4.542 1.00 15.62 O HETATM 524 OBI 881 B 1 8.648 23.763 7.598 1.00 15.54 O HETATM 525 CBJ 881 B 1 9.024 19.553 13.226 1.00 20.10 C HETATM 526 CBK 881 B 1 12.375 24.338 1.522 1.00 18.97 C HETATM 527 CBL 881 B 1 7.923 20.858 11.537 1.00 17.37 C HETATM 528 CBM 881 B 1 11.611 24.797 3.742 1.00 17.97 C HETATM 529 CBN 881 B 1 8.927 18.425 14.060 1.00 22.40 C HETATM 530 CBO 881 B 1 13.384 24.418 0.545 1.00 18.49 C HETATM 531 CBP 881 B 1 6.675 22.680 10.423 1.00 18.71 C HETATM 532 CBQ 881 B 1 9.543 25.762 4.613 1.00 15.37 C HETATM 533 CBR 881 B 1 7.658 23.812 8.473 1.00 17.39 C HETATM 534 CBS 881 B 1 8.511 24.784 6.696 1.00 18.16 C HETATM 535 CBT 881 B 1 7.697 22.845 9.493 1.00 16.73 C HETATM 536 CBU 881 B 1 9.512 24.854 5.678 1.00 18.37 C HETATM 537 CBV 881 B 1 4.377 23.231 11.155 1.00 26.31 C HETATM 538 CBW 881 B 1 8.449 27.719 3.488 1.00 18.45 C HETATM 539 O HOH A 14 12.813 13.941 4.916 1.00 22.78 O HETATM 540 O HOH A 15 24.736 26.041 -12.263 1.00 31.70 O HETATM 541 O HOH A 16 22.170 26.540 -12.614 1.00 33.37 O HETATM 542 O HOH A 17 17.139 14.616 19.028 1.00 17.19 O HETATM 543 O HOH A 18 13.403 15.377 15.851 1.00 23.49 O HETATM 544 O HOH A 19 17.281 25.641 16.657 1.00 25.04 O HETATM 545 O HOH A 20 18.782 12.281 20.024 1.00 19.71 O HETATM 546 O HOH A 21 6.952 9.691 13.802 1.00 27.00 O HETATM 547 O HOH A 22 19.943 9.904 18.838 1.00 23.78 O HETATM 548 O HOH A 23 7.222 29.027 0.047 1.00 22.24 O HETATM 549 O HOH A 24 14.491 28.281 22.788 1.00 22.25 O HETATM 550 O HOH A 25 17.531 14.672 10.068 1.00 26.49 O HETATM 551 O HOH A 26 14.313 25.416 22.911 1.00 27.93 O HETATM 552 O HOH A 27 16.309 26.428 21.065 1.00 27.77 O HETATM 553 O HOH A 28 7.988 22.085 -6.410 1.00 30.17 O HETATM 554 O HOH A 29 6.073 16.018 5.482 1.00 37.37 O HETATM 555 O HOH A 30 15.855 28.071 -1.851 1.00 24.79 O HETATM 556 O HOH A 31 12.990 27.940 -1.613 1.00 21.29 O HETATM 557 O HOH A 32 14.026 27.651 29.579 1.00 39.67 O HETATM 558 O HOH A 33 9.669 29.774 0.037 1.00 20.14 O HETATM 559 O HOH A 35 20.688 25.356 -10.982 1.00 20.95 O HETATM 560 O HOH A 36 14.778 27.257 -9.671 1.00 24.62 O HETATM 561 O HOH A 37 14.887 29.504 -11.511 1.00 23.71 O HETATM 562 O HOH A 38 16.373 14.871 7.595 1.00 25.22 O HETATM 563 O HOH A 39 18.917 27.347 -11.181 1.00 18.16 O HETATM 564 O HOH A 40 4.428 26.820 2.024 1.00 23.37 O HETATM 565 O HOH A 41 21.082 14.022 13.139 1.00 27.21 O HETATM 566 O HOH A 42 5.959 13.084 15.349 1.00 36.10 O HETATM 567 O HOH A 43 7.130 13.450 6.738 1.00 34.33 O HETATM 568 O HOH A 45 21.230 18.816 12.871 1.00 40.53 O HETATM 569 O HOH A 46 7.702 16.406 -1.728 1.00 33.21 O HETATM 570 O HOH A 47 15.414 11.972 6.452 1.00 33.41 O HETATM 571 O HOH A 48 23.043 9.864 13.779 1.00 36.61 O HETATM 572 O HOH A 49 23.626 8.136 15.668 1.00 40.81 O HETATM 573 O HOH A 50 22.079 9.608 11.752 1.00 42.18 O HETATM 574 O HOH A 52 11.231 24.796 -10.592 1.00 44.38 O HETATM 575 O HOH A 54 7.747 14.685 2.830 1.00 32.32 O HETATM 576 O HOH A 57 9.375 10.056 15.991 1.00 39.55 O HETATM 577 O HOH A 59 17.998 26.095 19.236 1.00 37.36 O HETATM 578 O HOH A 62 4.641 16.073 13.659 1.00 29.24 O HETATM 579 O HOH A 63 4.584 26.537 5.020 1.00 29.79 O HETATM 580 O HOH A 66 4.291 13.671 12.290 1.00 43.73 O HETATM 581 O HOH A 67 14.486 13.499 17.866 1.00 21.56 O HETATM 582 O HOH A 70 10.064 29.924 -2.819 1.00 34.34 O HETATM 583 O HOH A 71 17.942 27.524 15.029 1.00 32.83 O HETATM 584 O HOH A 72 18.928 17.127 9.986 1.00 30.58 O HETATM 585 O HOH A 78 16.419 29.971 -7.823 1.00 39.80 O HETATM 586 O HOH A 82 14.116 11.389 10.398 1.00 39.53 O HETATM 587 O HOH A 86 12.296 26.411 -13.071 1.00 40.67 O HETATM 588 O HOH A 89 9.369 21.643 -12.386 1.00 45.98 O HETATM 589 O HOH A 90 21.283 26.006 17.677 1.00 38.46 O HETATM 590 O HOH A 91 11.455 27.656 0.725 1.00 21.39 O HETATM 591 O HOH A 93 15.141 25.723 -11.692 1.00 25.06 O HETATM 592 O HOH A 96 7.062 23.495 -11.023 1.00 38.58 O HETATM 593 O HOH A 98 18.955 29.886 17.471 1.00 43.98 O HETATM 594 O HOH A 103 18.547 23.249 15.881 1.00 23.66 O HETATM 595 O HOH A 104 20.881 21.460 15.060 1.00 33.38 O HETATM 596 O HOH A 106 9.451 12.637 8.260 1.00 15.44 O HETATM 597 O HOH A 107 11.069 11.988 5.968 1.00 27.41 O HETATM 598 O HOH A 114 18.044 26.590 -1.255 1.00 16.09 O HETATM 599 O HOH A 115 9.080 25.452 -7.487 1.00 32.75 O HETATM 600 O HOH A 116 8.789 24.501 -9.993 1.00 37.84 O HETATM 601 O HOH A 117 9.443 24.815 -12.761 1.00 41.61 O HETATM 602 O HOH A 122 23.274 32.330 25.471 1.00 48.44 O HETATM 603 O HOH A 123 20.892 31.257 26.834 1.00 45.20 O HETATM 604 O HOH A 124 20.586 32.212 31.497 1.00 41.62 O HETATM 605 O HOH A 125 2.566 24.510 1.090 1.00 43.42 O HETATM 606 O HOH A 126 13.050 30.066 -2.905 1.00 45.32 O HETATM 607 O HOH B 3 16.176 21.700 0.089 1.00 32.26 O HETATM 608 O HOH B 4 13.977 15.975 22.643 1.00 16.43 O HETATM 609 O HOH B 5 5.306 18.833 12.728 1.00 26.93 O HETATM 610 O HOH B 6 10.822 23.972 21.414 1.00 21.60 O HETATM 611 O HOH B 7 11.084 30.289 10.855 1.00 30.38 O HETATM 612 O HOH B 8 10.263 30.493 8.741 1.00 12.40 O HETATM 613 O HOH B 9 19.482 21.236 6.942 1.00 28.34 O HETATM 614 O HOH B 11 13.202 28.621 2.391 1.00 28.28 O HETATM 615 O HOH B 12 9.849 14.148 18.539 1.00 36.41 O HETATM 616 O HOH B 25 7.923 20.964 22.190 1.00 22.39 O HETATM 617 O HOH B 26 12.665 30.682 4.651 1.00 24.13 O HETATM 618 O HOH B 27 13.850 25.058 19.994 1.00 16.49 O HETATM 619 O HOH B 28 14.634 25.209 17.400 1.00 19.64 O HETATM 620 O HOH B 29 16.891 29.851 7.240 1.00 24.27 O HETATM 621 O HOH B 30 18.976 18.386 7.007 1.00 37.70 O HETATM 622 O HOH B 31 11.050 26.891 18.536 1.00 27.74 O HETATM 623 O HOH B 32 8.223 14.732 -3.715 1.00 38.00 O HETATM 624 O HOH B 33 19.071 21.552 10.317 1.00 19.50 O HETATM 625 O HOH B 34 24.111 24.269 1.000 1.00 30.28 O HETATM 626 O HOH B 35 10.926 22.460 25.342 1.00 21.98 O HETATM 627 O HOH B 36 8.725 28.777 8.605 1.00 22.40 O HETATM 628 O HOH B 37 14.886 27.565 10.014 1.00 32.03 O HETATM 629 O HOH B 38 13.605 27.909 19.820 1.00 37.55 O HETATM 630 O HOH B 39 11.985 26.533 21.290 1.00 38.45 O HETATM 631 O HOH B 40 1.993 23.980 6.486 1.00 32.85 O HETATM 632 O HOH B 41 18.644 24.031 13.365 1.00 41.86 O HETATM 633 O HOH B 42 12.256 20.993 29.296 1.00 35.76 O HETATM 634 O HOH B 43 12.890 13.280 2.045 1.00 34.35 O HETATM 635 O HOH B 44 6.535 19.347 -5.274 1.00 37.47 O HETATM 636 O HOH B 45 4.241 20.868 14.341 1.00 34.45 O HETATM 637 O HOH B 46 18.949 25.456 7.065 1.00 31.54 O HETATM 638 O HOH B 47 13.708 28.840 12.333 1.00 30.26 O HETATM 639 O HOH B 48 20.601 14.674 3.111 1.00 41.02 O HETATM 640 O HOH B 49 23.118 14.399 -3.619 1.00 29.27 O HETATM 641 O HOH B 50 13.807 11.209 0.799 1.00 44.20 O HETATM 642 O HOH B 51 17.107 30.920 3.851 1.00 36.69 O HETATM 643 O HOH B 52 17.443 33.092 6.626 1.00 36.42 O HETATM 644 O HOH B 53 7.775 12.199 -12.671 1.00 49.36 O HETATM 645 O HOH B 54 10.166 24.799 18.804 1.00 24.12 O HETATM 646 O HOH B 55 21.408 22.428 5.184 1.00 39.00 O HETATM 647 O HOH B 56 9.958 12.560 -0.610 1.00 32.13 O HETATM 648 O HOH B 57 7.875 17.237 -4.649 1.00 32.95 O HETATM 649 O HOH B 58 7.517 8.291 -11.681 1.00 41.76 O HETATM 650 O HOH B 59 11.666 16.245 18.914 1.00 27.18 O HETATM 651 O HOH B 60 22.388 21.221 -2.028 1.00 35.26 O HETATM 652 O HOH B 61 9.634 12.456 24.026 1.00 21.09 O HETATM 653 O HOH B 64 22.202 25.115 4.455 1.00 41.82 O HETATM 654 O HOH B 68 3.005 24.974 14.496 1.00 44.30 O HETATM 655 O HOH B 73 13.034 9.822 -1.807 1.00 48.25 O HETATM 656 O HOH B 74 7.334 27.058 20.224 1.00 44.23 O HETATM 657 O HOH B 75 12.996 12.536 31.551 1.00 26.86 O HETATM 658 O HOH B 77 13.449 24.969 25.557 1.00 33.05 O HETATM 659 O HOH B 80 7.614 12.462 22.242 1.00 24.92 O HETATM 660 O HOH B 81 16.293 29.224 13.886 1.00 36.71 O HETATM 661 O HOH B 84 17.517 27.900 10.486 1.00 31.94 O HETATM 662 O HOH B 85 17.308 11.538 0.612 1.00 44.16 O HETATM 663 O HOH B 87 8.995 13.043 28.047 1.00 36.28 O HETATM 664 O HOH B 92 12.409 27.821 16.718 1.00 34.57 O HETATM 665 O HOH B 94 7.330 10.661 -14.526 1.00 35.76 O HETATM 666 O HOH B 97 9.603 15.205 29.751 1.00 41.72 O HETATM 667 O HOH B 102 12.164 27.443 13.847 1.00 22.84 O HETATM 668 O HOH B 109 15.620 29.398 1.207 1.00 36.97 O HETATM 669 O HOH B 110 19.092 30.405 4.710 1.00 37.12 O HETATM 670 O HOH B 111 4.082 19.691 18.433 1.00 32.56 O HETATM 671 O HOH B 112 4.186 16.315 17.463 1.00 45.74 O HETATM 672 O HOH B 113 12.805 14.515 20.239 1.00 34.04 O HETATM 673 O HOH B 119 3.969 21.065 20.669 1.00 49.11 O HETATM 674 O HOH B 121 8.332 21.567 24.370 1.00 38.01 O CONECT 489 549 551 552 618 CONECT 489 629 630 CONECT 490 525 CONECT 491 526 CONECT 492 494 496 CONECT 493 495 497 CONECT 494 492 498 CONECT 495 493 499 CONECT 496 492 516 CONECT 497 493 517 CONECT 498 494 529 CONECT 499 495 530 CONECT 500 504 527 CONECT 501 505 528 CONECT 502 503 533 CONECT 503 502 534 CONECT 504 500 535 CONECT 505 501 536 CONECT 506 527 531 CONECT 507 528 532 CONECT 508 512 518 CONECT 509 513 518 CONECT 510 514 519 CONECT 511 515 519 CONECT 512 508 537 CONECT 513 509 537 CONECT 514 510 538 CONECT 515 511 538 CONECT 516 496 529 CONECT 517 497 530 CONECT 518 508 509 CONECT 519 510 511 CONECT 520 525 527 CONECT 521 526 528 CONECT 522 531 537 CONECT 523 532 538 CONECT 524 533 534 CONECT 525 490 520 529 CONECT 526 491 521 530 CONECT 527 500 506 520 CONECT 528 501 507 521 CONECT 529 498 516 525 CONECT 530 499 517 526 CONECT 531 506 522 535 CONECT 532 507 523 536 CONECT 533 502 524 535 CONECT 534 503 524 536 CONECT 535 504 531 533 CONECT 536 505 532 534 CONECT 537 512 513 522 CONECT 538 514 515 523 CONECT 549 489 CONECT 551 489 CONECT 552 489 CONECT 618 489 CONECT 629 489 CONECT 630 489 MASTER 357 0 2 0 0 0 7 6 672 2 57 2 END