data_3OJ0 # _entry.id 3OJ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OJ0 RCSB RCSB061176 WWPDB D_1000061176 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc64114.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OJ0 _pdbx_database_status.recvd_initial_deposition_date 2010-08-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Michalska, K.' 1 'Marshall, N.' 2 'Clancy, S.' 3 'Puttagunta, R.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Michalska, K.' 1 primary 'Marshall, N.' 2 primary 'Clancy, S.' 3 primary 'Puttagunta, R.' 4 primary 'Joachimiak, A.' 5 primary 'Midwest Center for Structural Genomics (MCSG)' 6 # _cell.entry_id 3OJ0 _cell.length_a 92.52 _cell.length_b 92.52 _cell.length_c 33.47 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OJ0 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutamyl-tRNA reductase' 16336.133 1 1.2.1.70 ? 'nucleotide binding domain' ? 2 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GluTR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAGKVSIPSIVYDIVRKNGGNKILLVGNG(MSE)LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDS LIKNNDVIITATSSKTPIVEERSL(MSE)PGKLFIDLGNPPNIERGNNVITLDEIYEISKKNE(MSE)LREEKINQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAGKVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN NDVIITATSSKTPIVEERSLMPGKLFIDLGNPPNIERGNNVITLDEIYEISKKNEMLREEKINQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc64114.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLY n 1 5 LYS n 1 6 VAL n 1 7 SER n 1 8 ILE n 1 9 PRO n 1 10 SER n 1 11 ILE n 1 12 VAL n 1 13 TYR n 1 14 ASP n 1 15 ILE n 1 16 VAL n 1 17 ARG n 1 18 LYS n 1 19 ASN n 1 20 GLY n 1 21 GLY n 1 22 ASN n 1 23 LYS n 1 24 ILE n 1 25 LEU n 1 26 LEU n 1 27 VAL n 1 28 GLY n 1 29 ASN n 1 30 GLY n 1 31 MSE n 1 32 LEU n 1 33 ALA n 1 34 SER n 1 35 GLU n 1 36 ILE n 1 37 ALA n 1 38 PRO n 1 39 TYR n 1 40 PHE n 1 41 SER n 1 42 TYR n 1 43 PRO n 1 44 GLN n 1 45 TYR n 1 46 LYS n 1 47 VAL n 1 48 THR n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ARG n 1 53 ASN n 1 54 ILE n 1 55 ASP n 1 56 HIS n 1 57 VAL n 1 58 ARG n 1 59 ALA n 1 60 PHE n 1 61 ALA n 1 62 GLU n 1 63 LYS n 1 64 TYR n 1 65 GLU n 1 66 TYR n 1 67 GLU n 1 68 TYR n 1 69 VAL n 1 70 LEU n 1 71 ILE n 1 72 ASN n 1 73 ASP n 1 74 ILE n 1 75 ASP n 1 76 SER n 1 77 LEU n 1 78 ILE n 1 79 LYS n 1 80 ASN n 1 81 ASN n 1 82 ASP n 1 83 VAL n 1 84 ILE n 1 85 ILE n 1 86 THR n 1 87 ALA n 1 88 THR n 1 89 SER n 1 90 SER n 1 91 LYS n 1 92 THR n 1 93 PRO n 1 94 ILE n 1 95 VAL n 1 96 GLU n 1 97 GLU n 1 98 ARG n 1 99 SER n 1 100 LEU n 1 101 MSE n 1 102 PRO n 1 103 GLY n 1 104 LYS n 1 105 LEU n 1 106 PHE n 1 107 ILE n 1 108 ASP n 1 109 LEU n 1 110 GLY n 1 111 ASN n 1 112 PRO n 1 113 PRO n 1 114 ASN n 1 115 ILE n 1 116 GLU n 1 117 ARG n 1 118 GLY n 1 119 ASN n 1 120 ASN n 1 121 VAL n 1 122 ILE n 1 123 THR n 1 124 LEU n 1 125 ASP n 1 126 GLU n 1 127 ILE n 1 128 TYR n 1 129 GLU n 1 130 ILE n 1 131 SER n 1 132 LYS n 1 133 LYS n 1 134 ASN n 1 135 GLU n 1 136 MSE n 1 137 LEU n 1 138 ARG n 1 139 GLU n 1 140 GLU n 1 141 LYS n 1 142 ILE n 1 143 ASN n 1 144 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'hemA, TV0590, TVG0579613' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GSS1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoplasma volcanium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HEM1_THEVO _struct_ref.pdbx_db_accession Q97B68 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDV IITATSSKTPIVEERSLMPGKLFIDLGNPPNIERGNNVITLDEIYEISKKNEMLREEKINQ ; _struct_ref.pdbx_align_begin 141 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OJ0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97B68 _struct_ref_seq.db_align_beg 141 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 281 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OJ0 SER A 1 ? UNP Q97B68 ? ? 'expression tag' -2 1 1 3OJ0 ASN A 2 ? UNP Q97B68 ? ? 'expression tag' -1 2 1 3OJ0 ALA A 3 ? UNP Q97B68 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OJ0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 2.0 ammonium sulfate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-07-04 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791831 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791831 # _reflns.entry_id 3OJ0 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.648 _reflns.number_obs 19834 _reflns.number_all 20664 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.4 _reflns.B_iso_Wilson_estimate 21.0 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.572 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 995 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OJ0 _refine.ls_number_reflns_obs 19828 _refine.ls_number_reflns_all 20835 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.687 _refine.ls_d_res_high 1.648 _refine.ls_percent_reflns_obs 98.71 _refine.ls_R_factor_obs 0.1608 _refine.ls_R_factor_all 0.1608 _refine.ls_R_factor_R_work 0.1596 _refine.ls_R_factor_R_free 0.1833 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.08 _refine.ls_number_reflns_R_free 1007 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.9674 _refine.aniso_B[2][2] -0.9674 _refine.aniso_B[3][3] 1.9347 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.424 _refine.solvent_model_param_bsol 41.393 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.16 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1094 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 1229 _refine_hist.d_res_high 1.648 _refine_hist.d_res_low 25.687 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1208 'X-RAY DIFFRACTION' ? f_angle_d 1.298 ? ? 1634 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.517 ? ? 475 'X-RAY DIFFRACTION' ? f_chiral_restr 0.082 ? ? 180 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 205 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.6476 1.7344 2645 0.2119 99.00 0.2381 . . 149 . . . . 'X-RAY DIFFRACTION' . 1.7344 1.8431 2695 0.1828 100.00 0.2035 . . 174 . . . . 'X-RAY DIFFRACTION' . 1.8431 1.9853 2658 0.1580 99.00 0.1879 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.9853 2.1850 2696 0.1435 100.00 0.1897 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.1850 2.5009 2697 0.1378 99.00 0.1778 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.5009 3.1500 2706 0.1506 98.00 0.1860 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.1500 25.6898 2724 0.1633 96.00 0.1637 . . 132 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3OJ0 _struct.title 'Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain)' _struct.pdbx_descriptor 'Glutamyl-tRNA reductase (E.C.1.2.1.70)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OJ0 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, reductase, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details 'full-length protein is active as a dimer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? GLY A 20 ? SER A 4 GLY A 17 1 ? 14 HELX_P HELX_P2 2 GLY A 30 ? ALA A 37 ? GLY A 27 ALA A 34 1 ? 8 HELX_P HELX_P3 3 PRO A 38 ? PHE A 40 ? PRO A 35 PHE A 37 5 ? 3 HELX_P HELX_P4 4 ASN A 53 ? GLU A 65 ? ASN A 50 GLU A 62 1 ? 13 HELX_P HELX_P5 5 ASP A 73 ? ASN A 80 ? ASP A 70 ASN A 77 1 ? 8 HELX_P HELX_P6 6 GLU A 96 ? LEU A 100 ? GLU A 93 LEU A 97 5 ? 5 HELX_P HELX_P7 7 LEU A 124 ? ARG A 138 ? LEU A 121 ARG A 135 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 30 C ? ? ? 1_555 A MSE 31 N ? ? A GLY 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 31 C ? ? ? 1_555 A LEU 32 N ? ? A MSE 28 A LEU 29 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A LEU 100 C ? ? ? 1_555 A MSE 101 N ? ? A LEU 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 101 C ? ? ? 1_555 A PRO 102 N ? ? A MSE 98 A PRO 99 1_555 ? ? ? ? ? ? ? 1.341 ? covale5 covale ? ? A GLU 135 C ? ? ? 1_555 A MSE 136 N ? ? A GLU 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.337 ? covale6 covale ? ? A MSE 136 C ? ? ? 1_555 A LEU 137 N ? ? A MSE 133 A LEU 134 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 42 A . ? TYR 39 A PRO 43 A ? PRO 40 A 1 5.35 2 ASN 111 A . ? ASN 108 A PRO 112 A ? PRO 109 A 1 -5.29 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 67 ? LEU A 70 ? GLU A 64 LEU A 67 A 2 LYS A 46 ? GLY A 51 ? LYS A 43 GLY A 48 A 3 LYS A 23 ? VAL A 27 ? LYS A 20 VAL A 24 A 4 VAL A 83 ? THR A 86 ? VAL A 80 THR A 83 A 5 LEU A 105 ? ASP A 108 ? LEU A 102 ASP A 105 A 6 ILE A 122 ? THR A 123 ? ILE A 119 THR A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 67 ? O GLU A 64 N VAL A 49 ? N VAL A 46 A 2 3 O THR A 48 ? O THR A 45 N LEU A 26 ? N LEU A 23 A 3 4 N LEU A 25 ? N LEU A 22 O ILE A 85 ? O ILE A 82 A 4 5 N ILE A 84 ? N ILE A 81 O LEU A 105 ? O LEU A 102 A 5 6 N ASP A 108 ? N ASP A 105 O ILE A 122 ? O ILE A 119 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 142' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 143' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 144' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 145' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 146' AC6 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 147' AC7 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 148' AC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 149' AC9 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 150' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 129 ? GLU A 126 . ? 1_555 ? 2 AC1 5 LYS A 133 ? LYS A 130 . ? 1_555 ? 3 AC1 5 MSE A 136 ? MSE A 133 . ? 5_564 ? 4 AC1 5 LEU A 137 ? LEU A 134 . ? 5_564 ? 5 AC1 5 GLU A 140 ? GLU A 137 . ? 5_564 ? 6 AC2 8 SER A 7 ? SER A 4 . ? 5_564 ? 7 AC2 8 ILE A 8 ? ILE A 5 . ? 5_564 ? 8 AC2 8 LYS A 104 ? LYS A 101 . ? 1_555 ? 9 AC2 8 HOH K . ? HOH A 151 . ? 1_555 ? 10 AC2 8 HOH K . ? HOH A 187 . ? 5_564 ? 11 AC2 8 HOH K . ? HOH A 203 . ? 1_555 ? 12 AC2 8 HOH K . ? HOH A 210 . ? 1_555 ? 13 AC2 8 HOH K . ? HOH A 211 . ? 1_555 ? 14 AC3 6 TYR A 42 ? TYR A 39 . ? 4_664 ? 15 AC3 6 GLU A 65 ? GLU A 62 . ? 4_664 ? 16 AC3 6 VAL A 69 ? VAL A 66 . ? 1_555 ? 17 AC3 6 LEU A 70 ? LEU A 67 . ? 1_555 ? 18 AC3 6 GOL E . ? GOL A 145 . ? 1_555 ? 19 AC3 6 HOH K . ? HOH A 170 . ? 4_664 ? 20 AC4 7 TYR A 42 ? TYR A 39 . ? 4_664 ? 21 AC4 7 LYS A 46 ? LYS A 43 . ? 4_664 ? 22 AC4 7 VAL A 47 ? VAL A 44 . ? 4_664 ? 23 AC4 7 GLU A 65 ? GLU A 62 . ? 4_664 ? 24 AC4 7 TYR A 66 ? TYR A 63 . ? 4_664 ? 25 AC4 7 GLU A 67 ? GLU A 64 . ? 4_664 ? 26 AC4 7 GOL D . ? GOL A 144 . ? 1_555 ? 27 AC5 6 LEU A 32 ? LEU A 29 . ? 1_555 ? 28 AC5 6 THR A 88 ? THR A 85 . ? 1_555 ? 29 AC5 6 LEU A 109 ? LEU A 106 . ? 1_555 ? 30 AC5 6 GLY A 110 ? GLY A 107 . ? 1_555 ? 31 AC5 6 ASN A 111 ? ASN A 108 . ? 1_555 ? 32 AC5 6 LEU A 124 ? LEU A 121 . ? 1_555 ? 33 AC6 7 ARG A 52 ? ARG A 49 . ? 1_555 ? 34 AC6 7 SER A 90 ? SER A 87 . ? 1_555 ? 35 AC6 7 LYS A 91 ? LYS A 88 . ? 1_555 ? 36 AC6 7 THR A 92 ? THR A 89 . ? 1_555 ? 37 AC6 7 HOH K . ? HOH A 196 . ? 1_554 ? 38 AC6 7 HOH K . ? HOH A 206 . ? 1_554 ? 39 AC6 7 HOH K . ? HOH A 231 . ? 1_555 ? 40 AC7 7 LYS A 5 ? LYS A 2 . ? 1_555 ? 41 AC7 7 VAL A 6 ? VAL A 3 . ? 1_555 ? 42 AC7 7 SER A 7 ? SER A 4 . ? 1_555 ? 43 AC7 7 SER A 10 ? SER A 7 . ? 1_555 ? 44 AC7 7 ARG A 138 ? ARG A 135 . ? 1_555 ? 45 AC7 7 HOH K . ? HOH A 210 . ? 6_655 ? 46 AC7 7 HOH K . ? HOH A 227 . ? 1_555 ? 47 AC8 7 ASN A 29 ? ASN A 26 . ? 1_555 ? 48 AC8 7 GLY A 51 ? GLY A 48 . ? 1_555 ? 49 AC8 7 ARG A 52 ? ARG A 49 . ? 1_555 ? 50 AC8 7 ASN A 53 ? ASN A 50 . ? 1_555 ? 51 AC8 7 THR A 88 ? THR A 85 . ? 1_555 ? 52 AC8 7 HOH K . ? HOH A 218 . ? 1_555 ? 53 AC8 7 HOH K . ? HOH A 226 . ? 1_555 ? 54 AC9 2 GLY A 30 ? GLY A 27 . ? 1_555 ? 55 AC9 2 MSE A 31 ? MSE A 28 . ? 1_555 ? # _database_PDB_matrix.entry_id 3OJ0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OJ0 _atom_sites.fract_transf_matrix[1][1] 0.010808 _atom_sites.fract_transf_matrix[1][2] 0.006240 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012480 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029876 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 GLY 4 1 1 GLY GLY A . n A 1 5 LYS 5 2 2 LYS LYS A . n A 1 6 VAL 6 3 3 VAL VAL A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 ILE 8 5 5 ILE ILE A . n A 1 9 PRO 9 6 6 PRO PRO A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 ILE 11 8 8 ILE ILE A . n A 1 12 VAL 12 9 9 VAL VAL A . n A 1 13 TYR 13 10 10 TYR TYR A . n A 1 14 ASP 14 11 11 ASP ASP A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 LYS 18 15 15 LYS LYS A . n A 1 19 ASN 19 16 16 ASN ASN A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 ASN 22 19 19 ASN ASN A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 LEU 26 23 23 LEU LEU A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 ASN 29 26 26 ASN ASN A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 MSE 31 28 28 MSE MSE A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 SER 34 31 31 SER SER A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 ILE 36 33 33 ILE ILE A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 PRO 38 35 35 PRO PRO A . n A 1 39 TYR 39 36 36 TYR TYR A . n A 1 40 PHE 40 37 37 PHE PHE A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 TYR 42 39 39 TYR TYR A . n A 1 43 PRO 43 40 40 PRO PRO A . n A 1 44 GLN 44 41 41 GLN GLN A . n A 1 45 TYR 45 42 42 TYR TYR A . n A 1 46 LYS 46 43 43 LYS LYS A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 THR 48 45 45 THR THR A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 ARG 52 49 49 ARG ARG A . n A 1 53 ASN 53 50 50 ASN ASN A . n A 1 54 ILE 54 51 51 ILE ILE A . n A 1 55 ASP 55 52 52 ASP ASP A . n A 1 56 HIS 56 53 53 HIS HIS A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 PHE 60 57 57 PHE PHE A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 LYS 63 60 60 LYS LYS A . n A 1 64 TYR 64 61 61 TYR TYR A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 TYR 68 65 65 TYR TYR A . n A 1 69 VAL 69 66 66 VAL VAL A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ILE 71 68 68 ILE ILE A . n A 1 72 ASN 72 69 69 ASN ASN A . n A 1 73 ASP 73 70 70 ASP ASP A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 ASP 75 72 72 ASP ASP A . n A 1 76 SER 76 73 73 SER SER A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 ILE 78 75 75 ILE ILE A . n A 1 79 LYS 79 76 76 LYS LYS A . n A 1 80 ASN 80 77 77 ASN ASN A . n A 1 81 ASN 81 78 78 ASN ASN A . n A 1 82 ASP 82 79 79 ASP ASP A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 ILE 84 81 81 ILE ILE A . n A 1 85 ILE 85 82 82 ILE ILE A . n A 1 86 THR 86 83 83 THR THR A . n A 1 87 ALA 87 84 84 ALA ALA A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 SER 90 87 87 SER SER A . n A 1 91 LYS 91 88 88 LYS LYS A . n A 1 92 THR 92 89 89 THR THR A . n A 1 93 PRO 93 90 90 PRO PRO A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 SER 99 96 96 SER SER A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 MSE 101 98 98 MSE MSE A . n A 1 102 PRO 102 99 99 PRO PRO A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 PHE 106 103 103 PHE PHE A . n A 1 107 ILE 107 104 104 ILE ILE A . n A 1 108 ASP 108 105 105 ASP ASP A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 GLY 110 107 107 GLY GLY A . n A 1 111 ASN 111 108 108 ASN ASN A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 ASN 114 111 111 ASN ASN A . n A 1 115 ILE 115 112 112 ILE ILE A . n A 1 116 GLU 116 113 113 GLU GLU A . n A 1 117 ARG 117 114 114 ARG ARG A . n A 1 118 GLY 118 115 115 GLY GLY A . n A 1 119 ASN 119 116 116 ASN ASN A . n A 1 120 ASN 120 117 117 ASN ASN A . n A 1 121 VAL 121 118 118 VAL VAL A . n A 1 122 ILE 122 119 119 ILE ILE A . n A 1 123 THR 123 120 120 THR THR A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 ASP 125 122 122 ASP ASP A . n A 1 126 GLU 126 123 123 GLU GLU A . n A 1 127 ILE 127 124 124 ILE ILE A . n A 1 128 TYR 128 125 125 TYR TYR A . n A 1 129 GLU 129 126 126 GLU GLU A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 SER 131 128 128 SER SER A . n A 1 132 LYS 132 129 129 LYS LYS A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 ASN 134 131 131 ASN ASN A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 MSE 136 133 133 MSE MSE A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 ARG 138 135 135 ARG ARG A . n A 1 139 GLU 139 136 136 GLU GLU A . n A 1 140 GLU 140 137 137 GLU GLU A . n A 1 141 LYS 141 138 138 LYS LYS A . n A 1 142 ILE 142 139 ? ? ? A . n A 1 143 ASN 143 140 ? ? ? A . n A 1 144 GLN 144 141 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 31 A MSE 28 ? MET SELENOMETHIONINE 2 A MSE 101 A MSE 98 ? MET SELENOMETHIONINE 3 A MSE 136 A MSE 133 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-01 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 36.7684 59.6621 9.9276 0.1760 0.1587 0.1401 -0.0230 -0.0229 0.0239 2.9635 1.3551 0.1447 -0.2213 0.3602 -0.0629 0.0596 -0.3254 -0.0113 0.2839 0.0447 -0.0813 -0.0248 -0.0065 -0.0578 'X-RAY DIFFRACTION' 2 ? refined 30.8229 46.9099 3.2243 0.1983 0.1160 0.1923 -0.0534 -0.0369 0.0351 1.3692 1.3476 1.4426 1.0001 -0.0670 -0.6398 0.0160 0.0020 -0.0835 0.0999 0.0042 -0.1089 0.1148 -0.0103 -0.0150 'X-RAY DIFFRACTION' 3 ? refined 26.4493 42.9259 0.2233 0.2299 0.1045 0.1882 -0.0633 -0.0482 0.0369 1.7539 1.7427 2.4144 0.8078 0.6791 0.4902 -0.3952 -0.0563 0.0350 -0.2949 -0.0250 0.0630 0.1400 -0.2266 0.2667 'X-RAY DIFFRACTION' 4 ? refined 27.7208 53.0837 -5.9858 0.2387 0.1130 0.1892 -0.0378 -0.0691 0.0173 0.6333 1.4044 0.8680 0.0858 0.1750 -1.0196 0.0679 0.2261 -0.0995 -0.5844 0.0572 0.0963 0.2779 -0.0015 -0.0972 'X-RAY DIFFRACTION' 5 ? refined 29.6076 59.7187 -7.8636 0.2352 0.1465 0.1569 0.0054 -0.0816 0.0117 1.1953 2.8069 1.5510 -0.9330 1.0285 -1.7156 0.2110 0.2136 0.0322 -0.6784 -0.0554 0.2121 0.0831 0.0856 -0.1136 'X-RAY DIFFRACTION' 6 ? refined 46.5842 64.9352 5.6880 0.1227 0.1299 0.1387 -0.0038 -0.0135 -0.0031 0.4737 0.5406 1.5126 0.3691 0.2945 0.7546 -0.0054 0.0238 -0.0207 -0.0156 0.1255 -0.0560 -0.0871 0.1943 -0.1271 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:15)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 16:57)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 58:71)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 72:90)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 91:118)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 119:138)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELX 'model building' . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 Coot 'model building' . ? 6 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELX phasing . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 26 ? ? -151.49 22.43 2 1 ASN A 69 ? ? -130.74 -66.75 3 1 ALA A 84 ? ? -152.14 61.20 4 1 PRO A 109 ? ? -69.47 -173.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A ILE 139 ? A ILE 142 5 1 Y 1 A ASN 140 ? A ASN 143 6 1 Y 1 A GLN 141 ? A GLN 144 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 142 1 GOL GOL A . C 2 GOL 1 143 1 GOL GOL A . D 2 GOL 1 144 1 GOL GOL A . E 2 GOL 1 145 1 GOL GOL A . F 2 GOL 1 146 1 GOL GOL A . G 2 GOL 1 147 1 GOL GOL A . H 3 SO4 1 148 1 SO4 SO4 A . I 3 SO4 1 149 1 SO4 SO4 A . J 3 SO4 1 150 1 SO4 SO4 A . K 4 HOH 1 151 1 HOH HOH A . K 4 HOH 2 152 2 HOH HOH A . K 4 HOH 3 153 3 HOH HOH A . K 4 HOH 4 154 4 HOH HOH A . K 4 HOH 5 155 5 HOH HOH A . K 4 HOH 6 156 6 HOH HOH A . K 4 HOH 7 157 7 HOH HOH A . K 4 HOH 8 158 8 HOH HOH A . K 4 HOH 9 159 9 HOH HOH A . K 4 HOH 10 160 10 HOH HOH A . K 4 HOH 11 161 11 HOH HOH A . K 4 HOH 12 162 12 HOH HOH A . K 4 HOH 13 163 13 HOH HOH A . K 4 HOH 14 164 14 HOH HOH A . K 4 HOH 15 165 15 HOH HOH A . K 4 HOH 16 166 16 HOH HOH A . K 4 HOH 17 167 17 HOH HOH A . K 4 HOH 18 168 18 HOH HOH A . K 4 HOH 19 169 19 HOH HOH A . K 4 HOH 20 170 20 HOH HOH A . K 4 HOH 21 171 21 HOH HOH A . K 4 HOH 22 172 22 HOH HOH A . K 4 HOH 23 173 23 HOH HOH A . K 4 HOH 24 174 24 HOH HOH A . K 4 HOH 25 175 25 HOH HOH A . K 4 HOH 26 176 26 HOH HOH A . K 4 HOH 27 177 27 HOH HOH A . K 4 HOH 28 178 28 HOH HOH A . K 4 HOH 29 179 29 HOH HOH A . K 4 HOH 30 180 30 HOH HOH A . K 4 HOH 31 181 31 HOH HOH A . K 4 HOH 32 182 32 HOH HOH A . K 4 HOH 33 183 33 HOH HOH A . K 4 HOH 34 184 34 HOH HOH A . K 4 HOH 35 185 35 HOH HOH A . K 4 HOH 36 186 36 HOH HOH A . K 4 HOH 37 187 37 HOH HOH A . K 4 HOH 38 188 38 HOH HOH A . K 4 HOH 39 189 39 HOH HOH A . K 4 HOH 40 190 40 HOH HOH A . K 4 HOH 41 191 41 HOH HOH A . K 4 HOH 42 192 42 HOH HOH A . K 4 HOH 43 193 43 HOH HOH A . K 4 HOH 44 194 44 HOH HOH A . K 4 HOH 45 195 45 HOH HOH A . K 4 HOH 46 196 46 HOH HOH A . K 4 HOH 47 197 47 HOH HOH A . K 4 HOH 48 198 48 HOH HOH A . K 4 HOH 49 199 49 HOH HOH A . K 4 HOH 50 200 50 HOH HOH A . K 4 HOH 51 201 51 HOH HOH A . K 4 HOH 52 202 52 HOH HOH A . K 4 HOH 53 203 53 HOH HOH A . K 4 HOH 54 204 54 HOH HOH A . K 4 HOH 55 205 55 HOH HOH A . K 4 HOH 56 206 56 HOH HOH A . K 4 HOH 57 207 57 HOH HOH A . K 4 HOH 58 208 58 HOH HOH A . K 4 HOH 59 209 59 HOH HOH A . K 4 HOH 60 210 60 HOH HOH A . K 4 HOH 61 211 61 HOH HOH A . K 4 HOH 62 212 62 HOH HOH A . K 4 HOH 63 213 63 HOH HOH A . K 4 HOH 64 214 64 HOH HOH A . K 4 HOH 65 215 65 HOH HOH A . K 4 HOH 66 216 66 HOH HOH A . K 4 HOH 67 217 67 HOH HOH A . K 4 HOH 68 218 68 HOH HOH A . K 4 HOH 69 219 69 HOH HOH A . K 4 HOH 70 220 70 HOH HOH A . K 4 HOH 71 221 71 HOH HOH A . K 4 HOH 72 222 72 HOH HOH A . K 4 HOH 73 223 73 HOH HOH A . K 4 HOH 74 224 74 HOH HOH A . K 4 HOH 75 225 75 HOH HOH A . K 4 HOH 76 226 76 HOH HOH A . K 4 HOH 77 227 77 HOH HOH A . K 4 HOH 78 228 78 HOH HOH A . K 4 HOH 79 229 79 HOH HOH A . K 4 HOH 80 230 80 HOH HOH A . K 4 HOH 81 231 81 HOH HOH A . K 4 HOH 82 232 82 HOH HOH A . K 4 HOH 83 233 83 HOH HOH A . K 4 HOH 84 234 84 HOH HOH A . #