HEADER HYDROLASE 22-AUG-10 3OJG TITLE STRUCTURE OF AN INACTIVE LACTONASE FROM GEOBACILLUS KAUSTOPHILUS WITH TITLE 2 BOUND N-BUTYRYL-DL-HOMOSERINE LACTONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK1506; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B, MODIFIED KEYWDS (BETA/ALPHA)8 BARREL, LACTONASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.XUE,J.Y.CHOW,A.TUNG,R.C.ROBINSON REVDAT 3 08-NOV-17 3OJG 1 REMARK REVDAT 2 26-MAR-14 3OJG 1 JRNL VERSN REVDAT 1 27-OCT-10 3OJG 0 JRNL AUTH J.Y.CHOW,B.XUE,K.H.LEE,A.TUNG,L.WU,R.C.ROBINSON,W.S.YEW JRNL TITL DIRECTED EVOLUTION OF A THERMOSTABLE QUORUM-QUENCHING JRNL TITL 2 LACTONASE FROM THE AMIDOHYDROLASE SUPERFAMILY JRNL REF J.BIOL.CHEM. V. 285 40911 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20980257 JRNL DOI 10.1074/JBC.M110.177139 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 45678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1177 - 3.4434 0.98 4663 248 0.1644 0.1815 REMARK 3 2 3.4434 - 2.7343 0.99 4570 241 0.1936 0.2044 REMARK 3 3 2.7343 - 2.3890 0.99 4538 240 0.1992 0.2161 REMARK 3 4 2.3890 - 2.1708 0.99 4483 231 0.2012 0.2323 REMARK 3 5 2.1708 - 2.0153 0.98 4454 256 0.2075 0.2254 REMARK 3 6 2.0153 - 1.8965 0.97 4373 247 0.2110 0.2545 REMARK 3 7 1.8965 - 1.8015 0.96 4320 209 0.2314 0.2742 REMARK 3 8 1.8015 - 1.7231 0.93 4199 218 0.2246 0.2505 REMARK 3 9 1.7231 - 1.6568 0.90 4091 200 0.2397 0.2844 REMARK 3 10 1.6568 - 1.5997 0.83 3685 212 0.2620 0.2888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.89300 REMARK 3 B22 (A**2) : -3.87600 REMARK 3 B33 (A**2) : 8.76900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2614 REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.065 380 REMARK 3 PLANARITY : 0.005 467 REMARK 3 DIHEDRAL : 17.045 961 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:19) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4912 7.1620 -23.7881 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1623 REMARK 3 T33: 0.3659 T12: -0.0709 REMARK 3 T13: -0.0286 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.8908 L22: 0.2670 REMARK 3 L33: 0.8923 L12: -0.2558 REMARK 3 L13: 0.7222 L23: -0.4214 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: 0.0309 S13: 0.7005 REMARK 3 S21: 0.1451 S22: -0.0478 S23: -0.1769 REMARK 3 S31: -0.6575 S32: 0.0794 S33: 0.1499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 20:41) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4724 -0.6765 -23.3426 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1364 REMARK 3 T33: 0.1326 T12: 0.0008 REMARK 3 T13: -0.0087 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.1392 L22: 0.1231 REMARK 3 L33: 0.1243 L12: -0.0248 REMARK 3 L13: 0.3197 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 0.0559 S13: 0.3286 REMARK 3 S21: -0.0583 S22: -0.0737 S23: -0.0003 REMARK 3 S31: -0.0448 S32: -0.0126 S33: 0.0882 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 42:47) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2644 10.6441 -20.6356 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.1778 REMARK 3 T33: 0.6525 T12: 0.0331 REMARK 3 T13: 0.0004 T23: -0.1665 REMARK 3 L TENSOR REMARK 3 L11: 1.9982 L22: 2.0487 REMARK 3 L33: 2.8049 L12: -1.2498 REMARK 3 L13: 0.4481 L23: 1.5708 REMARK 3 S TENSOR REMARK 3 S11: -0.3146 S12: -0.4479 S13: 1.1320 REMARK 3 S21: 0.0581 S22: -0.1526 S23: 0.4214 REMARK 3 S31: -0.9266 S32: -0.3722 S33: 0.4203 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 48:61) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1135 8.5245 -11.2153 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.2381 REMARK 3 T33: 0.1767 T12: -0.0116 REMARK 3 T13: -0.0078 T23: -0.2176 REMARK 3 L TENSOR REMARK 3 L11: 2.9213 L22: 1.9701 REMARK 3 L33: 2.2664 L12: -1.1486 REMARK 3 L13: -2.1585 L23: 0.9720 REMARK 3 S TENSOR REMARK 3 S11: -0.1865 S12: -0.8141 S13: 0.5656 REMARK 3 S21: 0.6272 S22: -0.0420 S23: 0.1839 REMARK 3 S31: 0.1646 S32: 0.1784 S33: -0.2329 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 62:81) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1829 2.4950 -24.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.1205 REMARK 3 T33: 0.2028 T12: -0.0209 REMARK 3 T13: -0.0147 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 0.4172 L22: 0.0428 REMARK 3 L33: 0.1161 L12: 0.1181 REMARK 3 L13: -0.0347 L23: -0.0425 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.1270 S13: 0.3388 REMARK 3 S21: 0.0436 S22: -0.0343 S23: -0.0027 REMARK 3 S31: 0.0177 S32: -0.1162 S33: 0.0569 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 82:87) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2598 14.2005 -21.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.1167 REMARK 3 T33: 0.5215 T12: 0.0360 REMARK 3 T13: -0.0477 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 2.5454 L22: 1.0682 REMARK 3 L33: 4.2342 L12: -0.5567 REMARK 3 L13: -1.3777 L23: -1.4199 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.0323 S13: 1.1344 REMARK 3 S21: -0.1145 S22: 0.3296 S23: 0.3668 REMARK 3 S31: -0.8861 S32: -0.4558 S33: -0.2964 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 88:109) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6335 -4.2235 -29.9726 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1061 REMARK 3 T33: 0.1542 T12: -0.0152 REMARK 3 T13: 0.0002 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.7660 L22: 0.0211 REMARK 3 L33: 0.2549 L12: -0.0780 REMARK 3 L13: -0.0045 L23: -0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0316 S13: 0.0719 REMARK 3 S21: -0.0660 S22: -0.0065 S23: -0.0321 REMARK 3 S31: 0.0399 S32: -0.0785 S33: 0.0295 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 110:114) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7476 -11.8223 -45.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.0894 REMARK 3 T33: 0.1650 T12: -0.0138 REMARK 3 T13: -0.0470 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.6794 L22: 2.0225 REMARK 3 L33: 1.4892 L12: -1.7975 REMARK 3 L13: 0.9928 L23: 0.6972 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: 0.2602 S13: -0.7924 REMARK 3 S21: 0.6992 S22: 0.0281 S23: 0.1436 REMARK 3 S31: 0.2349 S32: 0.2781 S33: -0.1879 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 115:131) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3775 -4.1783 -42.6088 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1974 REMARK 3 T33: 0.1183 T12: -0.0049 REMARK 3 T13: 0.0173 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.7593 L22: 0.8954 REMARK 3 L33: 0.4831 L12: -0.1430 REMARK 3 L13: -0.5216 L23: -0.2712 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: 0.4580 S13: 0.0617 REMARK 3 S21: -0.1682 S22: -0.0192 S23: -0.2958 REMARK 3 S31: 0.1099 S32: 0.0460 S33: -0.0042 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 132:149) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2501 0.3788 -32.8776 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1324 REMARK 3 T33: 0.2298 T12: -0.0162 REMARK 3 T13: -0.0024 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.4722 L22: 0.9444 REMARK 3 L33: 0.5188 L12: -0.0732 REMARK 3 L13: 0.2765 L23: 0.3203 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.0270 S13: 0.2430 REMARK 3 S21: 0.0394 S22: 0.0435 S23: 0.2189 REMARK 3 S31: -0.0466 S32: 0.0624 S33: 0.0165 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 150:155) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1418 -21.6405 -32.3555 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.0855 REMARK 3 T33: 0.2520 T12: 0.0164 REMARK 3 T13: -0.0350 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.4739 L22: 0.3661 REMARK 3 L33: 4.6270 L12: -0.5815 REMARK 3 L13: -0.2877 L23: -0.6499 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: 0.2752 S13: -0.6494 REMARK 3 S21: -0.4659 S22: -0.1013 S23: 0.0898 REMARK 3 S31: 0.6356 S32: -0.1325 S33: 0.0121 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 156:175) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5348 -9.9278 -37.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.1569 REMARK 3 T33: 0.1012 T12: 0.0167 REMARK 3 T13: 0.0269 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.4527 L22: 1.0153 REMARK 3 L33: 0.0910 L12: 0.0284 REMARK 3 L13: 0.3441 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.4709 S13: -0.0940 REMARK 3 S21: -0.2228 S22: 0.0446 S23: -0.0290 REMARK 3 S31: 0.1580 S32: 0.0216 S33: -0.0388 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 176:217) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0994 -17.4311 -24.6191 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1524 REMARK 3 T33: 0.1508 T12: 0.0013 REMARK 3 T13: -0.0027 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3544 L22: 0.7535 REMARK 3 L33: 0.7864 L12: 0.0002 REMARK 3 L13: 0.5032 L23: -0.3468 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.0321 S13: -0.2153 REMARK 3 S21: 0.0539 S22: -0.0395 S23: -0.1173 REMARK 3 S31: -0.1042 S32: 0.0457 S33: -0.0957 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 218:240) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8421 -14.9261 -17.2058 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.2276 REMARK 3 T33: 0.0967 T12: 0.0179 REMARK 3 T13: -0.0135 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.7272 L22: 0.5102 REMARK 3 L33: 0.6731 L12: -0.2132 REMARK 3 L13: -0.3321 L23: -0.4048 REMARK 3 S TENSOR REMARK 3 S11: 0.1870 S12: -0.3440 S13: -0.4191 REMARK 3 S21: 0.0970 S22: -0.1337 S23: 0.1180 REMARK 3 S31: -0.1373 S32: -0.2404 S33: -0.0390 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 241:248) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7729 -17.6507 -6.9034 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.3432 REMARK 3 T33: 0.1475 T12: -0.0140 REMARK 3 T13: -0.0049 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 1.3169 L22: 0.9548 REMARK 3 L33: 0.4379 L12: 0.3918 REMARK 3 L13: -0.4803 L23: -0.6113 REMARK 3 S TENSOR REMARK 3 S11: -0.1299 S12: -1.2116 S13: -0.5282 REMARK 3 S21: 0.5393 S22: 0.2917 S23: 0.2551 REMARK 3 S31: 0.0569 S32: -0.2353 S33: -0.0990 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 249:262) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8330 -15.2630 -11.7456 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.2780 REMARK 3 T33: 0.1651 T12: 0.0142 REMARK 3 T13: -0.0562 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2347 L22: 0.5411 REMARK 3 L33: 1.0699 L12: 0.0663 REMARK 3 L13: 0.4965 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0507 S13: 0.0200 REMARK 3 S21: 0.1071 S22: 0.1927 S23: -0.1912 REMARK 3 S31: -0.0946 S32: -0.0706 S33: -0.1048 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 263:282) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1721 -4.7199 -14.8103 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.1916 REMARK 3 T33: 0.0778 T12: 0.0048 REMARK 3 T13: 0.0274 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.4161 L22: 0.7438 REMARK 3 L33: 0.3801 L12: -0.3818 REMARK 3 L13: -0.2459 L23: 0.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.6360 S13: 0.0401 REMARK 3 S21: 0.2420 S22: 0.1041 S23: 0.0629 REMARK 3 S31: 0.1249 S32: 0.1135 S33: -0.0467 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 283:302) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2211 -6.2231 -5.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.4102 REMARK 3 T33: 0.0663 T12: -0.0107 REMARK 3 T13: 0.0207 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.8448 L22: 0.4530 REMARK 3 L33: 0.1293 L12: -0.6630 REMARK 3 L13: 0.2627 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.2401 S12: -0.8920 S13: 0.0336 REMARK 3 S21: 0.2561 S22: 0.2129 S23: 0.1195 REMARK 3 S31: 0.0162 S32: -0.1235 S33: -0.0248 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 303:310) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1191 -9.0078 -0.8533 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.5950 REMARK 3 T33: 0.2609 T12: 0.0324 REMARK 3 T13: -0.1078 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.1368 L22: 2.2368 REMARK 3 L33: 0.7320 L12: 0.3924 REMARK 3 L13: 0.7697 L23: 1.1863 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.9941 S13: 0.3028 REMARK 3 S21: 0.7022 S22: -0.2560 S23: -0.3153 REMARK 3 S31: -0.2631 S32: 0.4983 S33: 0.3365 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 311:325) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5466 -3.7891 -15.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1949 REMARK 3 T33: 0.2399 T12: -0.0250 REMARK 3 T13: -0.0246 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 1.2812 L22: 1.1089 REMARK 3 L33: 1.1038 L12: -0.1647 REMARK 3 L13: 0.3528 L23: 0.7984 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: -0.3284 S13: 0.4261 REMARK 3 S21: 0.2870 S22: 0.1623 S23: -0.1481 REMARK 3 S31: 0.0335 S32: -0.2488 S33: -0.0196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : INTER-FRAME TOTAL DEAD TIME: 5S REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45826 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, 20%(W/V) PEG 4000, 1.0MM REMARK 280 ZNCL2, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.20400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.20400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.13450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.12200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.13450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.12200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.20400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.13450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.12200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.20400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.13450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.12200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.20400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 ASN A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 23 94.81 -160.03 REMARK 500 PRO A 69 39.94 -94.81 REMARK 500 ALA A 105 73.97 -117.81 REMARK 500 ALA A 135 -132.35 45.58 REMARK 500 ILE A 317 -57.57 -120.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 ASN A 266 OD1 88.0 REMARK 620 3 HIS A 23 NE2 98.2 85.3 REMARK 620 4 KCX A 145 OQ2 89.3 174.1 89.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 145 OQ1 REMARK 620 2 HIS A 206 NE2 113.2 REMARK 620 3 HIS A 178 ND1 104.2 96.7 REMARK 620 4 HOH A 466 O 98.0 124.4 119.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HL4 A 327 DBREF 3OJG A 1 326 UNP Q5KZU5 Q5KZU5_GEOKA 1 326 SEQADV 3OJG GLY A -3 UNP Q5KZU5 EXPRESSION TAG SEQADV 3OJG SER A -2 UNP Q5KZU5 EXPRESSION TAG SEQADV 3OJG HIS A -1 UNP Q5KZU5 EXPRESSION TAG SEQADV 3OJG ASN A 0 UNP Q5KZU5 EXPRESSION TAG SEQADV 3OJG ASN A 266 UNP Q5KZU5 ASP 266 CONFLICT SEQRES 1 A 330 GLY SER HIS ASN MET ALA GLU MET VAL GLU THR VAL CYS SEQRES 2 A 330 GLY PRO VAL PRO VAL GLU GLN LEU GLY LYS THR LEU ILE SEQRES 3 A 330 HIS GLU HIS PHE LEU PHE GLY TYR PRO GLY PHE GLN GLY SEQRES 4 A 330 ASP VAL THR ARG GLY THR PHE ARG GLU ASP GLU SER LEU SEQRES 5 A 330 ARG VAL ALA VAL GLU ALA ALA GLU LYS MET LYS ARG HIS SEQRES 6 A 330 GLY ILE GLN THR VAL VAL ASP PRO THR PRO ASN ASP CYS SEQRES 7 A 330 GLY ARG ASN PRO ALA PHE LEU ARG ARG VAL ALA GLU GLU SEQRES 8 A 330 THR GLY LEU ASN ILE ILE CYS ALA THR GLY TYR TYR TYR SEQRES 9 A 330 GLU GLY GLU GLY ALA PRO PRO TYR PHE GLN PHE ARG ARG SEQRES 10 A 330 LEU LEU GLY THR ALA GLU ASP ASP ILE TYR ASP MET PHE SEQRES 11 A 330 MET ALA GLU LEU THR GLU GLY ILE ALA ASP THR GLY ILE SEQRES 12 A 330 LYS ALA GLY VAL ILE KCX LEU ALA SER SER LYS GLY ARG SEQRES 13 A 330 ILE THR GLU TYR GLU LYS MET PHE PHE ARG ALA ALA ALA SEQRES 14 A 330 ARG ALA GLN LYS GLU THR GLY ALA VAL ILE ILE THR HIS SEQRES 15 A 330 THR GLN GLU GLY THR MET GLY PRO GLU GLN ALA ALA TYR SEQRES 16 A 330 LEU LEU GLU HIS GLY ALA ASP PRO LYS LYS ILE VAL ILE SEQRES 17 A 330 GLY HIS MET CYS GLY ASN THR ASP PRO ASP TYR HIS ARG SEQRES 18 A 330 LYS THR LEU ALA TYR GLY VAL TYR ILE ALA PHE ASP ARG SEQRES 19 A 330 PHE GLY ILE GLN GLY MET VAL GLY ALA PRO THR ASP GLU SEQRES 20 A 330 GLU ARG VAL ARG THR LEU LEU ALA LEU LEU ARG ASP GLY SEQRES 21 A 330 TYR GLU LYS GLN ILE MET LEU SER HIS ASN THR VAL ASN SEQRES 22 A 330 VAL TRP LEU GLY ARG PRO PHE THR LEU PRO GLU PRO PHE SEQRES 23 A 330 ALA GLU MET MET LYS ASN TRP HIS VAL GLU HIS LEU PHE SEQRES 24 A 330 VAL ASN ILE ILE PRO ALA LEU LYS ASN GLU GLY ILE ARG SEQRES 25 A 330 ASP GLU VAL LEU GLU GLN MET PHE ILE GLY ASN PRO ALA SEQRES 26 A 330 ALA LEU PHE SER ALA MODRES 3OJG KCX A 145 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 145 12 HET ZN A 401 1 HET FE A 402 1 HET HL4 A 327 12 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM FE FE (III) ION HETNAM HL4 N-[(3S)-2-OXOTETRAHYDROFURAN-3-YL]BUTANAMIDE HETSYN HL4 N-BUTYRYL-L-HOMOSERINE LACTONE FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 ZN ZN 2+ FORMUL 3 FE FE 3+ FORMUL 4 HL4 C8 H13 N O3 FORMUL 5 HOH *263(H2 O) HELIX 1 1 GLU A 15 LEU A 17 5 3 HELIX 2 2 GLY A 32 VAL A 37 5 6 HELIX 3 3 ARG A 43 HIS A 61 1 19 HELIX 4 4 PRO A 71 GLY A 75 5 5 HELIX 5 5 ASN A 77 GLY A 89 1 13 HELIX 6 6 PRO A 106 LEU A 115 1 10 HELIX 7 7 THR A 117 GLU A 132 1 16 HELIX 8 8 THR A 154 GLY A 172 1 19 HELIX 9 9 MET A 184 HIS A 195 1 12 HELIX 10 10 ASP A 198 LYS A 200 5 3 HELIX 11 11 HIS A 206 ASN A 210 5 5 HELIX 12 12 ASP A 212 ALA A 221 1 10 HELIX 13 13 THR A 241 ASP A 255 1 15 HELIX 14 14 TYR A 257 LYS A 259 5 3 HELIX 15 15 PRO A 279 MET A 286 1 8 HELIX 16 16 GLU A 292 ASN A 297 1 6 HELIX 17 17 ASN A 297 GLU A 305 1 9 HELIX 18 18 ARG A 308 ILE A 317 1 10 HELIX 19 19 ILE A 317 SER A 325 1 9 SHEET 1 A 2 MET A 4 THR A 7 0 SHEET 2 A 2 GLY A 10 PRO A 13 -1 O VAL A 12 N VAL A 5 SHEET 1 B 8 THR A 20 LEU A 21 0 SHEET 2 B 8 THR A 65 ASP A 68 1 O VAL A 67 N LEU A 21 SHEET 3 B 8 ASN A 91 THR A 96 1 O ILE A 93 N ASP A 68 SHEET 4 B 8 VAL A 143 ALA A 147 1 O KCX A 145 N THR A 96 SHEET 5 B 8 VAL A 174 HIS A 178 1 O VAL A 174 N ILE A 144 SHEET 6 B 8 ILE A 202 ILE A 204 1 O VAL A 203 N ILE A 175 SHEET 7 B 8 TYR A 225 PHE A 228 1 O TYR A 225 N ILE A 204 SHEET 8 B 8 ILE A 261 LEU A 263 1 O MET A 262 N PHE A 228 SHEET 1 C 2 HIS A 25 PHE A 28 0 SHEET 2 C 2 VAL A 268 TRP A 271 1 O ASN A 269 N HIS A 25 LINK C ILE A 144 N KCX A 145 1555 1555 1.33 LINK C KCX A 145 N LEU A 146 1555 1555 1.33 LINK NE2 HIS A 25 ZN ZN A 401 1555 1555 2.08 LINK OD1 ASN A 266 ZN ZN A 401 1555 1555 2.14 LINK OQ1 KCX A 145 FE FE A 402 1555 1555 2.16 LINK NE2 HIS A 206 FE FE A 402 1555 1555 2.20 LINK ND1 HIS A 178 FE FE A 402 1555 1555 2.24 LINK NE2 HIS A 23 ZN ZN A 401 1555 1555 2.26 LINK OQ2 KCX A 145 ZN ZN A 401 1555 1555 2.43 LINK FE FE A 402 O HOH A 466 1555 1555 2.61 SITE 1 AC1 6 HIS A 23 HIS A 25 KCX A 145 ASN A 266 SITE 2 AC1 6 FE A 402 HOH A 466 SITE 1 AC2 6 KCX A 145 HIS A 178 HIS A 206 ARG A 230 SITE 2 AC2 6 ZN A 401 HOH A 466 SITE 1 AC3 8 PHE A 28 TYR A 30 ARG A 230 MET A 236 SITE 2 AC3 8 ASN A 266 VAL A 268 TRP A 271 HOH A 466 CRYST1 70.269 76.244 134.408 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007440 0.00000