HEADER IMMUNE SYSTEM 25-AUG-10 3OKL TITLE CRYSTAL STRUCTURE OF S25-39 IN COMPLEX WITH KDO(2.8)KDO COMPND MOL_ID: 1; COMPND 2 MOLECULE: S25-39 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S25-39 FAB (IGG1K) HEAVY CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 OTHER_DETAILS: ASCITES; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 STRAIN: BALB/C; SOURCE 10 OTHER_DETAILS: ASCITES KEYWDS ANTIBODY, FAB, IGG, CARBOHYDRATE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.J.BLACKLER,S.V.EVANS REVDAT 4 29-JUL-20 3OKL 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 07-MAR-18 3OKL 1 REMARK REVDAT 2 04-MAY-11 3OKL 1 JRNL REVDAT 1 06-APR-11 3OKL 0 JRNL AUTH R.J.BLACKLER,C.L.BROOKS,D.W.EVANS,L.BRADE,P.KOSMA,H.BRADE, JRNL AUTH 2 S.V.EVANS JRNL TITL A COMMON NH53K MUTATION IN THE COMBINING SITE OF ANTIBODIES JRNL TITL 2 RAISED AGAINST CHLAMYDIAL LPS GLYCOCONJUGATES SIGNIFICANTLY JRNL TITL 3 INCREASES AVIDITY. JRNL REF BIOCHEMISTRY V. 50 3357 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21405106 JRNL DOI 10.1021/BI101886V REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9214 - 4.6103 0.97 2689 167 0.1573 0.1933 REMARK 3 2 4.6103 - 3.6668 0.99 2640 147 0.1458 0.1880 REMARK 3 3 3.6668 - 3.2054 1.00 2607 145 0.1805 0.2160 REMARK 3 4 3.2054 - 2.9134 1.00 2611 129 0.1898 0.2495 REMARK 3 5 2.9134 - 2.7051 1.00 2620 134 0.1994 0.2340 REMARK 3 6 2.7051 - 2.5459 1.00 2581 119 0.2036 0.3027 REMARK 3 7 2.5459 - 2.4187 0.99 2564 144 0.2052 0.2499 REMARK 3 8 2.4187 - 2.3135 1.00 2590 120 0.2035 0.2549 REMARK 3 9 2.3135 - 2.2246 0.99 2548 135 0.2118 0.2789 REMARK 3 10 2.2246 - 2.1479 0.99 2564 103 0.2115 0.2853 REMARK 3 11 2.1479 - 2.0808 0.99 2517 139 0.2072 0.2817 REMARK 3 12 2.0808 - 2.0214 0.99 2529 153 0.2216 0.2859 REMARK 3 13 2.0214 - 1.9682 0.98 2488 144 0.2319 0.2792 REMARK 3 14 1.9682 - 1.9203 0.98 2522 146 0.2544 0.3238 REMARK 3 15 1.9203 - 1.8766 0.98 2492 126 0.2870 0.3149 REMARK 3 16 1.8766 - 1.8367 0.98 2491 143 0.3132 0.3970 REMARK 3 17 1.8367 - 1.8000 0.97 2463 134 0.3105 0.3666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 38.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13760 REMARK 3 B22 (A**2) : 0.25380 REMARK 3 B33 (A**2) : -0.11620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 3511 REMARK 3 ANGLE : 1.877 4782 REMARK 3 CHIRALITY : 0.152 542 REMARK 3 PLANARITY : 0.009 604 REMARK 3 DIHEDRAL : 13.475 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.7 W8RSSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.670 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.28 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MPD, ZNAC, NACACOD, PH 6.5, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.93400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.82850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.93400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.82850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 SER B 128 OG REMARK 470 ARG B 213 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 187 O HOH A 296 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 488 O HOH B 527 2555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -44.98 68.96 REMARK 500 ALA A 84 173.69 179.60 REMARK 500 LEU A 94 -139.20 53.81 REMARK 500 ASP B 95 -153.19 -105.63 REMARK 500 TYR B 99 -73.39 -119.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 214 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 58 OE2 REMARK 620 2 HOH B 243 O 97.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKD RELATED DB: PDB REMARK 900 RELATED ID: 3OKE RELATED DB: PDB REMARK 900 RELATED ID: 3OKK RELATED DB: PDB REMARK 900 RELATED ID: 3MHM RELATED DB: PDB REMARK 900 RELATED ID: 3MHN RELATED DB: PDB REMARK 900 RELATED ID: 3MHO RELATED DB: PDB DBREF 3OKL A 1 214 PDB 3OKL 3OKL 1 214 DBREF 3OKL B 1 213 PDB 3OKL 3OKL 1 213 SEQRES 1 A 219 ASP ILE VAL MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET ASN CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE ALA SEQRES 7 A 219 LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG ALA ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET THR SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA SER HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 222 PRO GLY GLY SER LEU ARG LEU ALA CYS ALA THR SER GLY SEQRES 3 B 222 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 222 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 222 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 B 222 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 222 SER SER LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 222 ASP SER ALA THR TYR TYR CYS ALA ARG ASP HIS ASP GLY SEQRES 9 B 222 TYR TYR GLU ARG PHE ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 222 VAL THR VAL SER ALA ALA ALA THR THR PRO PRO SER VAL SEQRES 11 B 222 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 222 THR GLY VAL HIS THR PHE PRO ALA VAL LEU SER SER ASP SEQRES 15 B 222 LEU TYR THR LEU THR SER SER VAL THR VAL PRO SER LYS SEQRES 16 B 222 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 222 ARG HET KDA C 1 19 HET KDO C 2 15 HET ZN B 214 1 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM ZN ZINC ION FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO C8 H14 O8 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *537(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 ASN A 212 CYS A 214 5 3 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ARG B 83 SER B 87 5 5 HELIX 7 7 GLY B 127 GLN B 131 5 5 HELIX 8 8 SER B 156 SER B 158 5 3 HELIX 9 9 PRO B 200 SER B 203 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O ASN A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 102 LYS A 107 1 O GLU A 105 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 102 LYS A 107 1 O GLU A 105 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 2 LEU A 27C ASN A 27D 0 SHEET 2 D 2 LYS A 30 ASN A 31 -1 O LYS A 30 N ASN A 27D SHEET 1 E 4 THR A 114 PHE A 118 0 SHEET 2 E 4 GLY A 129 PHE A 139 -1 O ASN A 137 N THR A 114 SHEET 3 E 4 TYR A 173 THR A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 E 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 F 4 SER A 153 ARG A 155 0 SHEET 2 F 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 F 4 SER A 191 SER A 197 -1 O GLU A 195 N LYS A 147 SHEET 4 F 4 ILE A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O SER B 25 N LYS B 3 SHEET 3 G 4 SER B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 G 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 THR B 57 TYR B 59 -1 O GLU B 58 N PHE B 50 SHEET 1 I 4 LEU B 11 VAL B 12 0 SHEET 2 I 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 I 4 ALA B 88 ARG B 94 -1 N TYR B 90 O THR B 107 SHEET 4 I 4 TYR B 102 TRP B 103 -1 O TYR B 102 N ARG B 94 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 MET B 135 TYR B 145 -1 O LEU B 141 N TYR B 122 SHEET 3 J 4 LEU B 174 PRO B 184 -1 O TYR B 175 N TYR B 145 SHEET 4 J 4 VAL B 163 THR B 165 -1 N HIS B 164 O SER B 180 SHEET 1 K 4 SER B 120 LEU B 124 0 SHEET 2 K 4 MET B 135 TYR B 145 -1 O LEU B 141 N TYR B 122 SHEET 3 K 4 LEU B 174 PRO B 184 -1 O TYR B 175 N TYR B 145 SHEET 4 K 4 VAL B 169 SER B 171 -1 N SER B 171 O LEU B 174 SHEET 1 L 3 THR B 151 TRP B 154 0 SHEET 2 L 3 THR B 194 HIS B 199 -1 O ASN B 196 N THR B 153 SHEET 3 L 3 THR B 204 LYS B 209 -1 O VAL B 206 N VAL B 197 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.09 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.08 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 4 CYS B 140 CYS B 195 1555 1555 2.07 LINK O8 KDA C 1 C2 KDO C 2 1555 1555 1.46 LINK OE2 GLU B 58 ZN ZN B 214 1555 1555 2.06 LINK ZN ZN B 214 O HOH B 243 1555 1555 2.38 CISPEP 1 SER A 7 PRO A 8 0 -6.45 CISPEP 2 TYR A 140 PRO A 141 0 1.78 CISPEP 3 PHE B 146 PRO B 147 0 -4.93 CISPEP 4 GLU B 148 PRO B 149 0 -3.51 CISPEP 5 TRP B 188 PRO B 189 0 -0.21 CRYST1 45.525 81.657 131.868 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021966 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007583 0.00000