HEADER TRANSFERASE 25-AUG-10 3OKP TITLE CRYSTAL STRUCTURE OF CORYNEBACTERIUM GLUTAMICUM PIMB' BOUND TO GDP-MAN TITLE 2 (ORTHORHOMBIC CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-MANNOSE-DEPENDENT ALPHA-(1-6)-PHOSPHATIDYLINOSITOL COMPND 3 MONOMANNOSIDE MANNOSYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GUANOSINE DIPHOSPHOMANNOSE-PHOSPHATIDYL-INOSITOL ALPHA- COMPND 6 MANNOSYLTRANSFERASE, PHOSPHATIDYLINOSITOL ALPHA-MANNOSYLTRANSFERASE, COMPND 7 PI ALPHA-MANNOSYLTRANSFERASE, ALPHA-MANNOSYLTRANSFERASE, ALPHA-MANT, COMPND 8 ALPHA-D-MANNOSE-ALPHA-(1-6)-PHOSPHATIDYLMYO-INOSITOL- COMPND 9 MANNOSYLTRANSFERASE; COMPND 10 EC: 2.4.1.57; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_COMMON: BREVIBACTERIUM FLAVUM; SOURCE 4 ORGANISM_TAXID: 1718; SOURCE 5 GENE: CG2400, CGL2186, NCGL2106, PIMB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PET KEYWDS GT-B FOLD, ALPHA-MANNOSYLTRANSFERASE, GDP-MAN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BATT,T.JABEEN,G.S.BESRA,K.FUTTERER REVDAT 4 06-SEP-23 3OKP 1 REMARK SEQADV REVDAT 3 12-JAN-11 3OKP 1 JRNL REVDAT 2 13-OCT-10 3OKP 1 JRNL REVDAT 1 15-SEP-10 3OKP 0 JRNL AUTH S.M.BATT,T.JABEEN,A.K.MISHRA,N.VEERAPEN,K.KRUMBACH, JRNL AUTH 2 L.EGGELING,G.S.BESRA,K.FUTTERER JRNL TITL ACCEPTOR SUBSTRATE DISCRIMINATION IN JRNL TITL 2 PHOSPHATIDYL-MYO-INOSITOL MANNOSIDE SYNTHESIS: STRUCTURAL JRNL TITL 3 AND MUTATIONAL ANALYSIS OF MANNOSYLTRANSFERASE JRNL TITL 4 CORYNEBACTERIUM GLUTAMICUM PIMB'. JRNL REF J.BIOL.CHEM. V. 285 37741 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20843801 JRNL DOI 10.1074/JBC.M110.165407 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2955 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4038 ; 1.022 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 4.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.301 ;23.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;12.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;11.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2198 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1310 ; 0.170 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2039 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.066 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1945 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3039 ; 0.432 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1172 ; 0.650 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 997 ; 1.076 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 170 REMARK 3 RESIDUE RANGE : A 364 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9751 1.3315 41.3762 REMARK 3 T TENSOR REMARK 3 T11: -0.0338 T22: -0.0287 REMARK 3 T33: -0.0333 T12: -0.0098 REMARK 3 T13: -0.0139 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.9180 L22: 0.9777 REMARK 3 L33: 0.5696 L12: -0.1074 REMARK 3 L13: -0.2273 L23: -0.3231 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: -0.0027 S13: -0.0492 REMARK 3 S21: 0.0482 S22: 0.0231 S23: -0.0265 REMARK 3 S31: -0.0359 S32: -0.0416 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2110 16.7754 17.0576 REMARK 3 T TENSOR REMARK 3 T11: -0.0266 T22: -0.0255 REMARK 3 T33: -0.0144 T12: 0.0008 REMARK 3 T13: 0.0088 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4169 L22: 0.4347 REMARK 3 L33: 0.8387 L12: 0.0911 REMARK 3 L13: 0.0521 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.0065 S13: -0.0175 REMARK 3 S21: -0.0002 S22: 0.0090 S23: -0.0198 REMARK 3 S31: 0.0211 S32: -0.0158 S33: 0.0284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28997 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DL-MALIC ACID PH 6.1, 13% PEG REMARK 280 3350 , VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.37300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.44750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.44750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.37300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.50100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 382 REMARK 465 LEU A 383 REMARK 465 ALA A 384 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 LEU A 387 REMARK 465 GLU A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLU A 47 CD OE1 OE2 REMARK 470 GLU A 48 OE1 OE2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 HIS A 120 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 LYS A 136 CE NZ REMARK 470 GLU A 140 OE1 OE2 REMARK 470 LYS A 175 CD CE NZ REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 362 OE1 OE2 REMARK 470 GLU A 370 CD OE1 OE2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 ARG A 381 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 64 36.88 -74.43 REMARK 500 HIS A 118 -108.88 -133.39 REMARK 500 SER A 205 154.30 175.14 REMARK 500 MET A 278 89.95 -152.55 REMARK 500 LEU A 292 -67.80 -144.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GDD A 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDD A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OKA RELATED DB: PDB REMARK 900 PIMB' BOUND TO GDP-MAN (TRICLINNIC CRYSTAL FORM) REMARK 900 RELATED ID: 3OKC RELATED DB: PDB REMARK 900 PIMB' BOUND TO GDP (ORTHORHOMBIC CRYSTAL FORM) DBREF 3OKP A 1 381 UNP Q8NNK8 PIMB_CORGL 1 381 SEQADV 3OKP LYS A 382 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP LEU A 383 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP ALA A 384 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP ALA A 385 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP ALA A 386 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP LEU A 387 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP GLU A 388 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 389 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 390 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 391 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 392 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 393 UNP Q8NNK8 EXPRESSION TAG SEQADV 3OKP HIS A 394 UNP Q8NNK8 EXPRESSION TAG SEQRES 1 A 394 MET SER ALA SER ARG LYS THR LEU VAL VAL THR ASN ASP SEQRES 2 A 394 PHE PRO PRO ARG ILE GLY GLY ILE GLN SER TYR LEU ARG SEQRES 3 A 394 ASP PHE ILE ALA THR GLN ASP PRO GLU SER ILE VAL VAL SEQRES 4 A 394 PHE ALA SER THR GLN ASN ALA GLU GLU ALA HIS ALA TYR SEQRES 5 A 394 ASP LYS THR LEU ASP TYR GLU VAL ILE ARG TRP PRO ARG SEQRES 6 A 394 SER VAL MET LEU PRO THR PRO THR THR ALA HIS ALA MET SEQRES 7 A 394 ALA GLU ILE ILE ARG GLU ARG GLU ILE ASP ASN VAL TRP SEQRES 8 A 394 PHE GLY ALA ALA ALA PRO LEU ALA LEU MET ALA GLY THR SEQRES 9 A 394 ALA LYS GLN ALA GLY ALA SER LYS VAL ILE ALA SER THR SEQRES 10 A 394 HIS GLY HIS GLU VAL GLY TRP SER MET LEU PRO GLY SER SEQRES 11 A 394 ARG GLN SER LEU ARG LYS ILE GLY THR GLU VAL ASP VAL SEQRES 12 A 394 LEU THR TYR ILE SER GLN TYR THR LEU ARG ARG PHE LYS SEQRES 13 A 394 SER ALA PHE GLY SER HIS PRO THR PHE GLU HIS LEU PRO SEQRES 14 A 394 SER GLY VAL ASP VAL LYS ARG PHE THR PRO ALA THR PRO SEQRES 15 A 394 GLU ASP LYS SER ALA THR ARG LYS LYS LEU GLY PHE THR SEQRES 16 A 394 ASP THR THR PRO VAL ILE ALA CYS ASN SER ARG LEU VAL SEQRES 17 A 394 PRO ARG LYS GLY GLN ASP SER LEU ILE LYS ALA MET PRO SEQRES 18 A 394 GLN VAL ILE ALA ALA ARG PRO ASP ALA GLN LEU LEU ILE SEQRES 19 A 394 VAL GLY SER GLY ARG TYR GLU SER THR LEU ARG ARG LEU SEQRES 20 A 394 ALA THR ASP VAL SER GLN ASN VAL LYS PHE LEU GLY ARG SEQRES 21 A 394 LEU GLU TYR GLN ASP MET ILE ASN THR LEU ALA ALA ALA SEQRES 22 A 394 ASP ILE PHE ALA MET PRO ALA ARG THR ARG GLY GLY GLY SEQRES 23 A 394 LEU ASP VAL GLU GLY LEU GLY ILE VAL TYR LEU GLU ALA SEQRES 24 A 394 GLN ALA CYS GLY VAL PRO VAL ILE ALA GLY THR SER GLY SEQRES 25 A 394 GLY ALA PRO GLU THR VAL THR PRO ALA THR GLY LEU VAL SEQRES 26 A 394 VAL GLU GLY SER ASP VAL ASP LYS LEU SER GLU LEU LEU SEQRES 27 A 394 ILE GLU LEU LEU ASP ASP PRO ILE ARG ARG ALA ALA MET SEQRES 28 A 394 GLY ALA ALA GLY ARG ALA HIS VAL GLU ALA GLU TRP SER SEQRES 29 A 394 TRP GLU ILE MET GLY GLU ARG LEU THR ASN ILE LEU GLN SEQRES 30 A 394 SER GLU PRO ARG LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 31 A 394 HIS HIS HIS HIS HET GDD A 601 56 HETNAM GDD GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE FORMUL 2 GDD C16 H25 N5 O16 P2 FORMUL 3 HOH *175(H2 O) HELIX 1 1 GLY A 19 ALA A 30 1 12 HELIX 2 2 THR A 31 GLN A 32 5 2 HELIX 3 3 ASP A 33 GLU A 35 5 3 HELIX 4 4 ASN A 45 LYS A 54 1 10 HELIX 5 5 THR A 71 ARG A 85 1 15 HELIX 6 6 PRO A 97 LEU A 100 5 4 HELIX 7 7 MET A 101 ALA A 108 1 8 HELIX 8 8 HIS A 120 SER A 125 1 6 HELIX 9 9 LEU A 127 VAL A 141 1 15 HELIX 10 10 SER A 148 GLY A 160 1 13 HELIX 11 11 THR A 181 LEU A 192 1 12 HELIX 12 12 VAL A 208 LYS A 211 5 4 HELIX 13 13 GLY A 212 ARG A 227 1 16 HELIX 14 14 TYR A 240 ALA A 248 1 9 HELIX 15 15 THR A 249 GLN A 253 5 5 HELIX 16 16 GLU A 262 ALA A 273 1 12 HELIX 17 17 ARG A 283 LEU A 287 5 5 HELIX 18 18 GLY A 293 CYS A 302 1 10 HELIX 19 19 GLY A 313 VAL A 318 5 6 HELIX 20 20 ASP A 330 ASP A 343 1 14 HELIX 21 21 ASP A 344 TRP A 363 1 20 HELIX 22 22 SER A 364 SER A 378 1 15 SHEET 1 A 7 GLU A 59 TRP A 63 0 SHEET 2 A 7 ILE A 37 SER A 42 1 N VAL A 39 O ILE A 61 SHEET 3 A 7 THR A 7 THR A 11 1 N VAL A 9 O PHE A 40 SHEET 4 A 7 ASN A 89 PHE A 92 1 O TRP A 91 N LEU A 8 SHEET 5 A 7 LYS A 112 SER A 116 1 O ILE A 114 N VAL A 90 SHEET 6 A 7 VAL A 143 TYR A 146 1 O THR A 145 N ALA A 115 SHEET 7 A 7 THR A 164 HIS A 167 1 O THR A 164 N LEU A 144 SHEET 1 B 6 VAL A 255 GLY A 259 0 SHEET 2 B 6 GLN A 231 VAL A 235 1 N ILE A 234 O LYS A 256 SHEET 3 B 6 VAL A 200 ASN A 204 1 N ILE A 201 O LEU A 233 SHEET 4 B 6 ILE A 275 MET A 278 1 O ILE A 275 N ALA A 202 SHEET 5 B 6 VAL A 306 ALA A 308 1 O ILE A 307 N PHE A 276 SHEET 6 B 6 GLY A 323 VAL A 325 1 O LEU A 324 N ALA A 308 CISPEP 1 PRO A 15 PRO A 16 0 9.35 CISPEP 2 ALA A 96 PRO A 97 0 -0.38 SITE 1 AC1 14 ARG A 206 ARG A 210 LYS A 211 VAL A 235 SITE 2 AC1 14 GLY A 236 ARG A 260 LEU A 261 TYR A 263 SITE 3 AC1 14 MET A 266 GLU A 290 ILE A 294 VAL A 295 SITE 4 AC1 14 GLU A 298 HOH A 547 CRYST1 44.746 87.002 106.895 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009355 0.00000