HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-AUG-10 3OKX TITLE CRYSTAL STRUCTURE OF YAEB-LIKE PROTEIN FROM RHODOPSEUDOMONAS PALUSTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YAEB-LIKE PROTEIN RPA0152; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: RPA0152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS PSI-2, MIDWEST CENTER FOR STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MCSG, UNKNOWN FUNCTION, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,E.EVDOKIMOVA,F.LIU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 1 08-SEP-10 3OKX 0 JRNL AUTH C.CHANG,E.EVDOKIMOVA,F.LIU,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF YAEB-LIKE PROTEIN FROM RHODOPSEUDOMONAS JRNL TITL 2 PALUSTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.746 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2583 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3528 ; 1.468 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;29.699 ;21.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;11.954 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;14.738 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2046 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1581 ; 1.115 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2554 ; 1.879 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 2.963 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 4.479 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2583 ; 1.465 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2503 -3.9224 -0.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.1468 REMARK 3 T33: 0.0444 T12: 0.0699 REMARK 3 T13: -0.0412 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 6.2653 L22: 0.7659 REMARK 3 L33: 4.7139 L12: -0.3758 REMARK 3 L13: -4.7630 L23: 0.6111 REMARK 3 S TENSOR REMARK 3 S11: 0.3360 S12: 0.7623 S13: 0.3110 REMARK 3 S21: -0.2843 S22: -0.0669 S23: 0.0552 REMARK 3 S31: -0.3471 S32: -0.7295 S33: -0.2691 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9955 7.2283 21.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0703 REMARK 3 T33: 0.0779 T12: 0.0172 REMARK 3 T13: 0.0126 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.2471 L22: 1.6352 REMARK 3 L33: 1.3801 L12: 0.3755 REMARK 3 L13: -0.1647 L23: 0.3971 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0355 S13: 0.0751 REMARK 3 S21: -0.1419 S22: 0.0349 S23: -0.0492 REMARK 3 S31: -0.1569 S32: -0.0408 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9099 -2.2758 3.6287 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.0832 REMARK 3 T33: 0.0599 T12: 0.0107 REMARK 3 T13: 0.0142 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5346 L22: 2.0749 REMARK 3 L33: 2.8753 L12: -1.0672 REMARK 3 L13: -0.9830 L23: 0.6767 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.0417 S13: 0.1113 REMARK 3 S21: -0.1993 S22: 0.0080 S23: -0.1281 REMARK 3 S31: -0.2996 S32: -0.0070 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4999 5.3240 24.2314 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0836 REMARK 3 T33: 0.0994 T12: 0.0175 REMARK 3 T13: 0.0047 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8287 L22: 1.2883 REMARK 3 L33: 1.1445 L12: 0.2207 REMARK 3 L13: 0.0331 L23: 0.3614 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.0038 S13: 0.0266 REMARK 3 S21: -0.0759 S22: 0.0248 S23: -0.1007 REMARK 3 S31: -0.0566 S32: -0.0084 S33: -0.0858 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3533 -19.8221 30.1615 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1664 REMARK 3 T33: 0.1693 T12: 0.0066 REMARK 3 T13: -0.0214 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.8970 L22: 2.0717 REMARK 3 L33: 0.6031 L12: 0.9744 REMARK 3 L13: -0.2544 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.0167 S13: 0.1054 REMARK 3 S21: -0.0193 S22: -0.0210 S23: -0.1072 REMARK 3 S31: 0.0926 S32: 0.0090 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9792 -5.3283 25.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.0131 T22: 0.2571 REMARK 3 T33: 0.1195 T12: -0.0214 REMARK 3 T13: -0.0103 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6790 L22: 1.3917 REMARK 3 L33: 7.5161 L12: -0.4226 REMARK 3 L13: -0.5687 L23: -1.8336 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.0555 S13: -0.0859 REMARK 3 S21: -0.0244 S22: 0.1537 S23: 0.2344 REMARK 3 S31: 0.1254 S32: -1.1553 S33: -0.1049 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0370 -18.6824 12.9357 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0815 REMARK 3 T33: 0.0731 T12: -0.0168 REMARK 3 T13: -0.0164 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.1620 L22: 0.9138 REMARK 3 L33: 1.6361 L12: 0.0060 REMARK 3 L13: -0.5068 L23: -0.4914 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0074 S13: -0.1077 REMARK 3 S21: -0.1426 S22: 0.0142 S23: 0.0313 REMARK 3 S31: 0.1697 S32: -0.1079 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8019 -8.8443 28.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.0600 T22: 0.1342 REMARK 3 T33: 0.1098 T12: -0.0141 REMARK 3 T13: -0.0011 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1298 L22: 0.9154 REMARK 3 L33: 2.7160 L12: 0.0790 REMARK 3 L13: 0.1024 L23: -0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0012 S13: -0.0395 REMARK 3 S21: 0.0763 S22: -0.0459 S23: 0.0784 REMARK 3 S31: 0.0134 S32: -0.1940 S33: 0.0218 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9998 -17.7849 12.4805 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.0857 REMARK 3 T33: 0.0883 T12: 0.0032 REMARK 3 T13: -0.0088 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.5981 L22: 0.3782 REMARK 3 L33: 1.2608 L12: -0.3654 REMARK 3 L13: -0.5709 L23: -0.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.0215 S13: -0.0390 REMARK 3 S21: -0.0812 S22: -0.0040 S23: 0.0257 REMARK 3 S31: 0.1496 S32: -0.0336 S33: 0.0032 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0465 -6.9726 14.1544 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.2093 REMARK 3 T33: 0.2971 T12: -0.0729 REMARK 3 T13: -0.0686 T23: -0.0947 REMARK 3 L TENSOR REMARK 3 L11: 20.6252 L22: 21.4658 REMARK 3 L33: 11.4661 L12: -7.9147 REMARK 3 L13: -3.0804 L23: -13.0577 REMARK 3 S TENSOR REMARK 3 S11: -0.4811 S12: -0.8309 S13: 1.0142 REMARK 3 S21: 1.1508 S22: -0.1883 S23: -1.4990 REMARK 3 S31: -0.6895 S32: 0.5223 S33: 0.6694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3OKX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB061245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M DI-SODIUM TARTRATE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.93900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.87800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.87800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.93900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 91 REMARK 465 ASN A 92 REMARK 465 ASP A 93 REMARK 465 PRO A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 167 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 152 REMARK 465 ALA B 153 REMARK 465 PRO B 154 REMARK 465 PRO B 155 REMARK 465 LYS B 156 REMARK 465 PRO B 157 REMARK 465 GLY B 158 REMARK 465 ASP B 159 REMARK 465 PHE B 160 REMARK 465 GLN B 161 REMARK 465 VAL B 162 REMARK 465 GLY B 163 REMARK 465 GLU B 164 REMARK 465 PRO B 165 REMARK 465 ARG B 166 REMARK 465 ARG B 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 238 O HOH B 239 6555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 46.20 -104.33 REMARK 500 ASP A 132 18.01 -143.90 REMARK 500 THR B 4 3.24 -59.41 REMARK 500 SER B 17 54.57 -146.50 REMARK 500 ASP B 132 19.73 -143.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 245 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A 284 DISTANCE = 5.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5921 RELATED DB: TARGETDB DBREF 3OKX A 1 167 UNP Q6NDF6 Q6NDF6_RHOPA 1 167 DBREF 3OKX B 1 167 UNP Q6NDF6 Q6NDF6_RHOPA 1 167 SEQADV 3OKX GLY A -1 UNP Q6NDF6 EXPRESSION TAG SEQADV 3OKX HIS A 0 UNP Q6NDF6 EXPRESSION TAG SEQADV 3OKX GLY B -1 UNP Q6NDF6 EXPRESSION TAG SEQADV 3OKX HIS B 0 UNP Q6NDF6 EXPRESSION TAG SEQRES 1 A 169 GLY HIS MSE ASP ALA THR ASP ASP ILE ARG ALA GLY GLU SEQRES 2 A 169 LEU ALA SER ASP TRP SER GLY SER PRO ASP ALA GLY VAL SEQRES 3 A 169 VAL PHE ILE GLY ARG ILE HIS THR PRO TRP ASN ARG LEU SEQRES 4 A 169 LYS GLU CYS PRO ARG HIS GLY ARG ALA ASP GLY PRO VAL SEQRES 5 A 169 CYS ARG ILE GLU VAL PHE GLU THR TRP LEU PRO ALA LEU SEQRES 6 A 169 ALA GLY ILE ASP ASP GLY THR LEU LEU GLU VAL PHE TYR SEQRES 7 A 169 TRP LEU HIS ARG SER ARG ARG ASP LEU LEU LEU GLN CYS SEQRES 8 A 169 PRO ARG ASN ASP GLY ASP ALA ARG GLY THR PHE SER ILE SEQRES 9 A 169 ARG SER PRO LEU ARG PRO ASN PRO ILE GLY THR SER ILE SEQRES 10 A 169 ALA ARG VAL ASP ARG ARG ASP GLY ALA ASN LEU PHE ILE SEQRES 11 A 169 ARG GLY LEU ASP CYS LEU ASP GLY THR PRO LEU VAL ASP SEQRES 12 A 169 LEU LYS PRO ASP ARG ALA GLU PHE MSE PRO LEU ALA PRO SEQRES 13 A 169 PRO LYS PRO GLY ASP PHE GLN VAL GLY GLU PRO ARG ARG SEQRES 1 B 169 GLY HIS MSE ASP ALA THR ASP ASP ILE ARG ALA GLY GLU SEQRES 2 B 169 LEU ALA SER ASP TRP SER GLY SER PRO ASP ALA GLY VAL SEQRES 3 B 169 VAL PHE ILE GLY ARG ILE HIS THR PRO TRP ASN ARG LEU SEQRES 4 B 169 LYS GLU CYS PRO ARG HIS GLY ARG ALA ASP GLY PRO VAL SEQRES 5 B 169 CYS ARG ILE GLU VAL PHE GLU THR TRP LEU PRO ALA LEU SEQRES 6 B 169 ALA GLY ILE ASP ASP GLY THR LEU LEU GLU VAL PHE TYR SEQRES 7 B 169 TRP LEU HIS ARG SER ARG ARG ASP LEU LEU LEU GLN CYS SEQRES 8 B 169 PRO ARG ASN ASP GLY ASP ALA ARG GLY THR PHE SER ILE SEQRES 9 B 169 ARG SER PRO LEU ARG PRO ASN PRO ILE GLY THR SER ILE SEQRES 10 B 169 ALA ARG VAL ASP ARG ARG ASP GLY ALA ASN LEU PHE ILE SEQRES 11 B 169 ARG GLY LEU ASP CYS LEU ASP GLY THR PRO LEU VAL ASP SEQRES 12 B 169 LEU LYS PRO ASP ARG ALA GLU PHE MSE PRO LEU ALA PRO SEQRES 13 B 169 PRO LYS PRO GLY ASP PHE GLN VAL GLY GLU PRO ARG ARG MODRES 3OKX MSE A 150 MET SELENOMETHIONINE MODRES 3OKX MSE B 150 MET SELENOMETHIONINE HET MSE A 150 8 HET MSE B 150 8 HET SAM A 201 27 HET SAM B 201 27 HETNAM MSE SELENOMETHIONINE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *286(H2 O) HELIX 1 1 ARG A 36 CYS A 40 5 5 HELIX 2 2 GLU A 57 ALA A 64 5 8 HELIX 3 3 PHE A 100 ILE A 102 5 3 HELIX 4 4 ARG A 146 PHE A 149 5 4 HELIX 5 5 LYS A 156 GLN A 161 5 6 HELIX 6 6 ARG B 36 CYS B 40 5 5 HELIX 7 7 GLU B 57 ALA B 64 5 8 HELIX 8 8 PHE B 100 ILE B 102 5 3 HELIX 9 9 ASP B 145 MSE B 150 1 6 SHEET 1 A 3 LEU A 12 ALA A 13 0 SHEET 2 A 3 LEU A 85 GLN A 88 -1 O LEU A 86 N LEU A 12 SHEET 3 A 3 ARG A 97 GLY A 98 -1 O ARG A 97 N GLN A 88 SHEET 1 B 2 ALA A 22 VAL A 24 0 SHEET 2 B 2 ALA B 22 VAL B 24 -1 O VAL B 24 N ALA A 22 SHEET 1 C 7 GLY A 28 HIS A 31 0 SHEET 2 C 7 CYS A 51 VAL A 55 -1 O ARG A 52 N HIS A 31 SHEET 3 C 7 ASN A 125 ILE A 128 -1 O LEU A 126 N ILE A 53 SHEET 4 C 7 ILE A 111 ASP A 122 -1 N ARG A 120 O PHE A 127 SHEET 5 C 7 LEU A 71 TRP A 77 -1 N VAL A 74 O SER A 114 SHEET 6 C 7 THR A 137 PRO A 144 -1 O LYS A 143 N GLU A 73 SHEET 7 C 7 GLY A 28 HIS A 31 -1 N ILE A 30 O THR A 137 SHEET 1 D 3 LEU B 12 ALA B 13 0 SHEET 2 D 3 LEU B 85 GLN B 88 -1 O LEU B 86 N LEU B 12 SHEET 3 D 3 ARG B 97 GLY B 98 -1 O ARG B 97 N GLN B 88 SHEET 1 E 7 GLY B 28 HIS B 31 0 SHEET 2 E 7 VAL B 50 VAL B 55 -1 O ARG B 52 N HIS B 31 SHEET 3 E 7 ASN B 125 ARG B 129 -1 O ILE B 128 N CYS B 51 SHEET 4 E 7 ILE B 111 ASP B 122 -1 N ARG B 120 O PHE B 127 SHEET 5 E 7 LEU B 71 TRP B 77 -1 N VAL B 74 O SER B 114 SHEET 6 E 7 THR B 137 PRO B 144 -1 O LYS B 143 N GLU B 73 SHEET 7 E 7 GLY B 28 HIS B 31 -1 N ILE B 30 O THR B 137 LINK C PHE A 149 N MSE A 150 1555 1555 1.32 LINK C MSE A 150 N PRO A 151 1555 1555 1.34 LINK C PHE B 149 N MSE B 150 1555 1555 1.32 LINK C MSE B 150 N PRO B 151 1555 1555 1.36 SITE 1 AC1 22 LEU A 37 CYS A 40 PRO A 41 ARG A 42 SITE 2 AC1 22 HIS A 43 TYR A 76 LEU A 78 HIS A 79 SITE 3 AC1 22 ARG A 80 SER A 81 ARG A 103 PRO A 105 SITE 4 AC1 22 GLY A 112 THR A 113 ASP A 132 CYS A 133 SITE 5 AC1 22 LEU A 134 THR A 137 HOH A 168 HOH A 216 SITE 6 AC1 22 HOH A 235 HOH A 260 SITE 1 AC2 23 ARG A 146 LYS A 156 HOH A 224 LEU B 37 SITE 2 AC2 23 CYS B 40 PRO B 41 ARG B 42 HIS B 43 SITE 3 AC2 23 TYR B 76 LEU B 78 HIS B 79 ARG B 80 SITE 4 AC2 23 SER B 81 ARG B 103 PRO B 105 GLY B 112 SITE 5 AC2 23 THR B 113 ASP B 132 CYS B 133 LEU B 134 SITE 6 AC2 23 THR B 137 HOH B 191 HOH B 216 CRYST1 74.317 74.317 116.817 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013456 0.007769 0.000000 0.00000 SCALE2 0.000000 0.015538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008560 0.00000