data_3OLO # _entry.id 3OLO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3OLO RCSB RCSB061272 WWPDB D_1000061272 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC67115.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OLO _pdbx_database_status.recvd_initial_deposition_date 2010-08-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Michalska, K.' 1 'Chhor, G.' 2 'Bearden, J.' 3 'Fenske, R.J.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'Crystal structure of a PAS domain from two-component sensor histidine kinase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Michalska, K.' 1 primary 'Chhor, G.' 2 primary 'Bearden, J.' 3 primary 'Fenske, R.J.' 4 primary 'Joachimiak, A.' 5 primary 'Midwest Center for Structural Genomics (MCSG)' 6 # _cell.entry_id 3OLO _cell.length_a 85.43 _cell.length_b 85.43 _cell.length_c 67.84 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 90.0 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OLO _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Two-component sensor histidine kinase' 14379.462 2 2.7.13.3 ? 'PAS domain' ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)NIQSELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCR(MSE)TEYSREQLLS(MSE)NLQDIDVDFALH DWEEIRQKNNYTFKTRYRSQSGRIFLVE(MSE)SLTFLEDQERRFSCVFVREKS ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMNIQSELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYT FKTRYRSQSGRIFLVEMSLTFLEDQERRFSCVFVREKS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC67115.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASN n 1 6 ILE n 1 7 GLN n 1 8 SER n 1 9 GLU n 1 10 LEU n 1 11 GLU n 1 12 PHE n 1 13 LYS n 1 14 PHE n 1 15 ALA n 1 16 HIS n 1 17 TYR n 1 18 LEU n 1 19 ILE n 1 20 ASN n 1 21 ASN n 1 22 ALA n 1 23 VAL n 1 24 GLU n 1 25 ALA n 1 26 SER n 1 27 PHE n 1 28 CYS n 1 29 LEU n 1 30 GLY n 1 31 ASP n 1 32 ASN n 1 33 TRP n 1 34 GLN n 1 35 PHE n 1 36 LEU n 1 37 TYR n 1 38 VAL n 1 39 ASN n 1 40 ASP n 1 41 ALA n 1 42 THR n 1 43 CYS n 1 44 ARG n 1 45 MSE n 1 46 THR n 1 47 GLU n 1 48 TYR n 1 49 SER n 1 50 ARG n 1 51 GLU n 1 52 GLN n 1 53 LEU n 1 54 LEU n 1 55 SER n 1 56 MSE n 1 57 ASN n 1 58 LEU n 1 59 GLN n 1 60 ASP n 1 61 ILE n 1 62 ASP n 1 63 VAL n 1 64 ASP n 1 65 PHE n 1 66 ALA n 1 67 LEU n 1 68 HIS n 1 69 ASP n 1 70 TRP n 1 71 GLU n 1 72 GLU n 1 73 ILE n 1 74 ARG n 1 75 GLN n 1 76 LYS n 1 77 ASN n 1 78 ASN n 1 79 TYR n 1 80 THR n 1 81 PHE n 1 82 LYS n 1 83 THR n 1 84 ARG n 1 85 TYR n 1 86 ARG n 1 87 SER n 1 88 GLN n 1 89 SER n 1 90 GLY n 1 91 ARG n 1 92 ILE n 1 93 PHE n 1 94 LEU n 1 95 VAL n 1 96 GLU n 1 97 MSE n 1 98 SER n 1 99 LEU n 1 100 THR n 1 101 PHE n 1 102 LEU n 1 103 GLU n 1 104 ASP n 1 105 GLN n 1 106 GLU n 1 107 ARG n 1 108 ARG n 1 109 PHE n 1 110 SER n 1 111 CYS n 1 112 VAL n 1 113 PHE n 1 114 VAL n 1 115 ARG n 1 116 GLU n 1 117 LYS n 1 118 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene alr0428 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'PCC 7120' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 103690 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8YZM9_ANASP _struct_ref.pdbx_db_accession Q8YZM9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNIQSELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKT RYRSQSGRIFLVEMSLTFLEDQERRFSCVFVREKS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3OLO A 4 ? 118 ? Q8YZM9 1 ? 115 ? 1 115 2 1 3OLO B 4 ? 118 ? Q8YZM9 1 ? 115 ? 1 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OLO SER A 1 ? UNP Q8YZM9 ? ? 'expression tag' -2 1 1 3OLO ASN A 2 ? UNP Q8YZM9 ? ? 'expression tag' -1 2 1 3OLO ALA A 3 ? UNP Q8YZM9 ? ? 'expression tag' 0 3 2 3OLO SER B 1 ? UNP Q8YZM9 ? ? 'expression tag' -2 4 2 3OLO ASN B 2 ? UNP Q8YZM9 ? ? 'expression tag' -1 5 2 3OLO ALA B 3 ? UNP Q8YZM9 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OLO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '0.05 M citric acid, 0.05 M BIS-TRIS propane, 16% (w/v) PEG3350, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2010-06-30 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 3OLO _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.0 _reflns.d_resolution_high 2.094 _reflns.number_obs 15260 _reflns.number_all 15323 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.138 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate 27.4 _reflns.pdbx_redundancy 6.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.743 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 749 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3OLO _refine.ls_number_reflns_obs 15213 _refine.ls_number_reflns_all 15213 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.202 _refine.ls_d_res_high 2.094 _refine.ls_percent_reflns_obs 99.44 _refine.ls_R_factor_obs 0.1799 _refine.ls_R_factor_all 0.1799 _refine.ls_R_factor_R_work 0.1772 _refine.ls_R_factor_R_free 0.2268 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.79 _refine.ls_number_reflns_R_free 881 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 5.9105 _refine.aniso_B[2][2] 5.9105 _refine.aniso_B[3][3] -11.8211 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.424 _refine.solvent_model_param_bsol 42.704 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1885 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 1950 _refine_hist.d_res_high 2.094 _refine_hist.d_res_low 30.202 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1959 'X-RAY DIFFRACTION' ? f_angle_d 1.000 ? ? 2634 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.357 ? ? 728 'X-RAY DIFFRACTION' ? f_chiral_restr 0.067 ? ? 271 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 344 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.0942 2.2253 2296 0.2237 99.00 0.2711 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.2253 2.3971 2337 0.2055 100.00 0.2614 . . 153 . . . . 'X-RAY DIFFRACTION' . 2.3971 2.6382 2368 0.1896 100.00 0.2439 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.6382 3.0196 2385 0.1804 100.00 0.2296 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.0196 3.8032 2435 0.1550 100.00 0.2224 . . 121 . . . . 'X-RAY DIFFRACTION' . 3.8032 30.2054 2511 0.1693 98.00 0.2034 . . 150 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3OLO _struct.title 'Crystal structure of a PAS domain from two-component sensor histidine kinase' _struct.pdbx_descriptor 'Two-component sensor histidine kinase (E.C.2.7.13.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OLO _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, histidine kinase, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 7 ? ALA A 22 ? GLN A 4 ALA A 19 1 ? 16 HELX_P HELX_P2 2 ASN A 39 ? GLU A 47 ? ASN A 36 GLU A 44 1 ? 9 HELX_P HELX_P3 3 SER A 49 ? LEU A 54 ? SER A 46 LEU A 51 1 ? 6 HELX_P HELX_P4 4 SER A 55 ? MSE A 56 ? SER A 52 MSE A 53 5 ? 2 HELX_P HELX_P5 5 ASN A 57 ? ILE A 61 ? ASN A 54 ILE A 58 5 ? 5 HELX_P HELX_P6 6 ASP A 64 ? HIS A 68 ? ASP A 61 HIS A 65 5 ? 5 HELX_P HELX_P7 7 ASP A 69 ? ASN A 77 ? ASP A 66 ASN A 74 1 ? 9 HELX_P HELX_P8 8 SER B 8 ? ALA B 22 ? SER B 5 ALA B 19 1 ? 15 HELX_P HELX_P9 9 ASN B 39 ? GLU B 47 ? ASN B 36 GLU B 44 1 ? 9 HELX_P HELX_P10 10 SER B 49 ? LEU B 54 ? SER B 46 LEU B 51 1 ? 6 HELX_P HELX_P11 11 SER B 55 ? MSE B 56 ? SER B 52 MSE B 53 5 ? 2 HELX_P HELX_P12 12 ASN B 57 ? ILE B 61 ? ASN B 54 ILE B 58 5 ? 5 HELX_P HELX_P13 13 ASP B 64 ? HIS B 68 ? ASP B 61 HIS B 65 5 ? 5 HELX_P HELX_P14 14 ASP B 69 ? ARG B 74 ? ASP B 66 ARG B 71 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 44 C ? ? ? 1_555 A MSE 45 N ? ? A ARG 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 45 C ? ? ? 1_555 A THR 46 N ? ? A MSE 42 A THR 43 1_555 ? ? ? ? ? ? ? 1.320 ? covale3 covale ? ? A SER 55 C ? ? ? 1_555 A MSE 56 N ? ? A SER 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 56 C ? ? ? 1_555 A ASN 57 N ? ? A MSE 53 A ASN 54 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A GLU 96 C ? ? ? 1_555 A MSE 97 N ? ? A GLU 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 97 C ? ? ? 1_555 A SER 98 N ? ? A MSE 94 A SER 95 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? B ARG 44 C ? ? ? 1_555 B MSE 45 N ? ? B ARG 41 B MSE 42 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? B MSE 45 C ? ? ? 1_555 B THR 46 N ? ? B MSE 42 B THR 43 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? B SER 55 C ? ? ? 1_555 B MSE 56 N ? ? B SER 52 B MSE 53 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? B MSE 56 C ? ? ? 1_555 B ASN 57 N ? ? B MSE 53 B ASN 54 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? B GLU 96 C ? ? ? 1_555 B MSE 97 N ? ? B GLU 93 B MSE 94 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? B MSE 97 C ? ? ? 1_555 B SER 98 N ? ? B MSE 94 B SER 95 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 35 ? VAL A 38 ? PHE A 32 VAL A 35 A 2 ALA A 25 ? LEU A 29 ? ALA A 22 LEU A 26 A 3 ARG A 107 ? GLU A 116 ? ARG A 104 GLU A 113 A 4 ILE A 92 ? ASP A 104 ? ILE A 89 ASP A 101 A 5 ASN A 78 ? ARG A 86 ? ASN A 75 ARG A 83 B 1 PHE B 35 ? VAL B 38 ? PHE B 32 VAL B 35 B 2 ALA B 25 ? GLY B 30 ? ALA B 22 GLY B 27 B 3 ARG B 107 ? GLU B 116 ? ARG B 104 GLU B 113 B 4 ILE B 92 ? ASP B 104 ? ILE B 89 ASP B 101 B 5 ASN B 78 ? ARG B 86 ? ASN B 75 ARG B 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 36 ? O LEU A 33 N CYS A 28 ? N CYS A 25 A 2 3 N ALA A 25 ? N ALA A 22 O VAL A 114 ? O VAL A 111 A 3 4 O PHE A 109 ? O PHE A 106 N LEU A 102 ? N LEU A 99 A 4 5 O LEU A 99 ? O LEU A 96 N TYR A 79 ? N TYR A 76 B 1 2 O LEU B 36 ? O LEU B 33 N CYS B 28 ? N CYS B 25 B 2 3 N PHE B 27 ? N PHE B 24 O VAL B 112 ? O VAL B 109 B 3 4 O PHE B 109 ? O PHE B 106 N LEU B 102 ? N LEU B 99 B 4 5 O PHE B 93 ? O PHE B 90 N TYR B 85 ? N TYR B 82 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 116' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 116' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 16 ? HIS A 13 . ? 1_555 ? 2 AC1 3 ASP A 40 ? ASP A 37 . ? 1_555 ? 3 AC1 3 GLN B 75 ? GLN B 72 . ? 8_665 ? 4 AC2 5 GLU A 96 ? GLU A 93 . ? 3_545 ? 5 AC2 5 HIS B 68 ? HIS B 65 . ? 1_555 ? 6 AC2 5 ASP B 69 ? ASP B 66 . ? 1_555 ? 7 AC2 5 LYS B 76 ? LYS B 73 . ? 1_555 ? 8 AC2 5 TYR B 79 ? TYR B 76 . ? 1_555 ? # _database_PDB_matrix.entry_id 3OLO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OLO _atom_sites.fract_transf_matrix[1][1] 0.011706 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014740 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ASN 5 2 ? ? ? A . n A 1 6 ILE 6 3 ? ? ? A . n A 1 7 GLN 7 4 4 GLN GLN A . n A 1 8 SER 8 5 5 SER SER A . n A 1 9 GLU 9 6 6 GLU GLU A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 LYS 13 10 10 LYS LYS A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 HIS 16 13 13 HIS HIS A . n A 1 17 TYR 17 14 14 TYR TYR A . n A 1 18 LEU 18 15 15 LEU LEU A . n A 1 19 ILE 19 16 16 ILE ILE A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 ASN 21 18 18 ASN ASN A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 GLU 24 21 21 GLU GLU A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 PHE 27 24 24 PHE PHE A . n A 1 28 CYS 28 25 25 CYS CYS A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 GLY 30 27 27 GLY GLY A . n A 1 31 ASP 31 28 28 ASP ASP A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 TRP 33 30 30 TRP TRP A . n A 1 34 GLN 34 31 31 GLN GLN A . n A 1 35 PHE 35 32 32 PHE PHE A . n A 1 36 LEU 36 33 33 LEU LEU A . n A 1 37 TYR 37 34 34 TYR TYR A . n A 1 38 VAL 38 35 35 VAL VAL A . n A 1 39 ASN 39 36 36 ASN ASN A . n A 1 40 ASP 40 37 37 ASP ASP A . n A 1 41 ALA 41 38 38 ALA ALA A . n A 1 42 THR 42 39 39 THR THR A . n A 1 43 CYS 43 40 40 CYS CYS A . n A 1 44 ARG 44 41 41 ARG ARG A . n A 1 45 MSE 45 42 42 MSE MSE A . n A 1 46 THR 46 43 43 THR THR A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 TYR 48 45 45 TYR TYR A . n A 1 49 SER 49 46 46 SER SER A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 GLN 52 49 49 GLN GLN A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 LEU 54 51 51 LEU LEU A . n A 1 55 SER 55 52 52 SER SER A . n A 1 56 MSE 56 53 53 MSE MSE A . n A 1 57 ASN 57 54 54 ASN ASN A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 GLN 59 56 56 GLN GLN A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 ILE 61 58 58 ILE ILE A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 VAL 63 60 60 VAL VAL A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 PHE 65 62 62 PHE PHE A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 ASP 69 66 66 ASP ASP A . n A 1 70 TRP 70 67 67 TRP TRP A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 GLU 72 69 69 GLU GLU A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 GLN 75 72 72 GLN GLN A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 ASN 78 75 75 ASN ASN A . n A 1 79 TYR 79 76 76 TYR TYR A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 PHE 81 78 78 PHE PHE A . n A 1 82 LYS 82 79 79 LYS LYS A . n A 1 83 THR 83 80 80 THR THR A . n A 1 84 ARG 84 81 81 ARG ARG A . n A 1 85 TYR 85 82 82 TYR TYR A . n A 1 86 ARG 86 83 83 ARG ARG A . n A 1 87 SER 87 84 84 SER SER A . n A 1 88 GLN 88 85 85 GLN GLN A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 ARG 91 88 88 ARG ARG A . n A 1 92 ILE 92 89 89 ILE ILE A . n A 1 93 PHE 93 90 90 PHE PHE A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 MSE 97 94 94 MSE MSE A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 PHE 101 98 98 PHE PHE A . n A 1 102 LEU 102 99 99 LEU LEU A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 ASP 104 101 101 ASP ASP A . n A 1 105 GLN 105 102 102 GLN GLN A . n A 1 106 GLU 106 103 103 GLU GLU A . n A 1 107 ARG 107 104 104 ARG ARG A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 SER 110 107 107 SER SER A . n A 1 111 CYS 111 108 108 CYS CYS A . n A 1 112 VAL 112 109 109 VAL VAL A . n A 1 113 PHE 113 110 110 PHE PHE A . n A 1 114 VAL 114 111 111 VAL VAL A . n A 1 115 ARG 115 112 112 ARG ARG A . n A 1 116 GLU 116 113 113 GLU GLU A . n A 1 117 LYS 117 114 114 LYS LYS A . n A 1 118 SER 118 115 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 ASN 5 2 ? ? ? B . n B 1 6 ILE 6 3 ? ? ? B . n B 1 7 GLN 7 4 ? ? ? B . n B 1 8 SER 8 5 5 SER SER B . n B 1 9 GLU 9 6 6 GLU GLU B . n B 1 10 LEU 10 7 7 LEU LEU B . n B 1 11 GLU 11 8 8 GLU GLU B . n B 1 12 PHE 12 9 9 PHE PHE B . n B 1 13 LYS 13 10 10 LYS LYS B . n B 1 14 PHE 14 11 11 PHE PHE B . n B 1 15 ALA 15 12 12 ALA ALA B . n B 1 16 HIS 16 13 13 HIS HIS B . n B 1 17 TYR 17 14 14 TYR TYR B . n B 1 18 LEU 18 15 15 LEU LEU B . n B 1 19 ILE 19 16 16 ILE ILE B . n B 1 20 ASN 20 17 17 ASN ASN B . n B 1 21 ASN 21 18 18 ASN ASN B . n B 1 22 ALA 22 19 19 ALA ALA B . n B 1 23 VAL 23 20 20 VAL VAL B . n B 1 24 GLU 24 21 21 GLU GLU B . n B 1 25 ALA 25 22 22 ALA ALA B . n B 1 26 SER 26 23 23 SER SER B . n B 1 27 PHE 27 24 24 PHE PHE B . n B 1 28 CYS 28 25 25 CYS CYS B . n B 1 29 LEU 29 26 26 LEU LEU B . n B 1 30 GLY 30 27 27 GLY GLY B . n B 1 31 ASP 31 28 28 ASP ASP B . n B 1 32 ASN 32 29 29 ASN ASN B . n B 1 33 TRP 33 30 30 TRP TRP B . n B 1 34 GLN 34 31 31 GLN GLN B . n B 1 35 PHE 35 32 32 PHE PHE B . n B 1 36 LEU 36 33 33 LEU LEU B . n B 1 37 TYR 37 34 34 TYR TYR B . n B 1 38 VAL 38 35 35 VAL VAL B . n B 1 39 ASN 39 36 36 ASN ASN B . n B 1 40 ASP 40 37 37 ASP ASP B . n B 1 41 ALA 41 38 38 ALA ALA B . n B 1 42 THR 42 39 39 THR THR B . n B 1 43 CYS 43 40 40 CYS CYS B . n B 1 44 ARG 44 41 41 ARG ARG B . n B 1 45 MSE 45 42 42 MSE MSE B . n B 1 46 THR 46 43 43 THR THR B . n B 1 47 GLU 47 44 44 GLU GLU B . n B 1 48 TYR 48 45 45 TYR TYR B . n B 1 49 SER 49 46 46 SER SER B . n B 1 50 ARG 50 47 47 ARG ARG B . n B 1 51 GLU 51 48 48 GLU GLU B . n B 1 52 GLN 52 49 49 GLN GLN B . n B 1 53 LEU 53 50 50 LEU LEU B . n B 1 54 LEU 54 51 51 LEU LEU B . n B 1 55 SER 55 52 52 SER SER B . n B 1 56 MSE 56 53 53 MSE MSE B . n B 1 57 ASN 57 54 54 ASN ASN B . n B 1 58 LEU 58 55 55 LEU LEU B . n B 1 59 GLN 59 56 56 GLN GLN B . n B 1 60 ASP 60 57 57 ASP ASP B . n B 1 61 ILE 61 58 58 ILE ILE B . n B 1 62 ASP 62 59 59 ASP ASP B . n B 1 63 VAL 63 60 60 VAL VAL B . n B 1 64 ASP 64 61 61 ASP ASP B . n B 1 65 PHE 65 62 62 PHE PHE B . n B 1 66 ALA 66 63 63 ALA ALA B . n B 1 67 LEU 67 64 64 LEU LEU B . n B 1 68 HIS 68 65 65 HIS HIS B . n B 1 69 ASP 69 66 66 ASP ASP B . n B 1 70 TRP 70 67 67 TRP TRP B . n B 1 71 GLU 71 68 68 GLU GLU B . n B 1 72 GLU 72 69 69 GLU GLU B . n B 1 73 ILE 73 70 70 ILE ILE B . n B 1 74 ARG 74 71 71 ARG ARG B . n B 1 75 GLN 75 72 72 GLN GLN B . n B 1 76 LYS 76 73 73 LYS LYS B . n B 1 77 ASN 77 74 74 ASN ASN B . n B 1 78 ASN 78 75 75 ASN ASN B . n B 1 79 TYR 79 76 76 TYR TYR B . n B 1 80 THR 80 77 77 THR THR B . n B 1 81 PHE 81 78 78 PHE PHE B . n B 1 82 LYS 82 79 79 LYS LYS B . n B 1 83 THR 83 80 80 THR THR B . n B 1 84 ARG 84 81 81 ARG ARG B . n B 1 85 TYR 85 82 82 TYR TYR B . n B 1 86 ARG 86 83 83 ARG ARG B . n B 1 87 SER 87 84 84 SER SER B . n B 1 88 GLN 88 85 85 GLN GLN B . n B 1 89 SER 89 86 86 SER SER B . n B 1 90 GLY 90 87 87 GLY GLY B . n B 1 91 ARG 91 88 88 ARG ARG B . n B 1 92 ILE 92 89 89 ILE ILE B . n B 1 93 PHE 93 90 90 PHE PHE B . n B 1 94 LEU 94 91 91 LEU LEU B . n B 1 95 VAL 95 92 92 VAL VAL B . n B 1 96 GLU 96 93 93 GLU GLU B . n B 1 97 MSE 97 94 94 MSE MSE B . n B 1 98 SER 98 95 95 SER SER B . n B 1 99 LEU 99 96 96 LEU LEU B . n B 1 100 THR 100 97 97 THR THR B . n B 1 101 PHE 101 98 98 PHE PHE B . n B 1 102 LEU 102 99 99 LEU LEU B . n B 1 103 GLU 103 100 100 GLU GLU B . n B 1 104 ASP 104 101 101 ASP ASP B . n B 1 105 GLN 105 102 102 GLN GLN B . n B 1 106 GLU 106 103 103 GLU GLU B . n B 1 107 ARG 107 104 104 ARG ARG B . n B 1 108 ARG 108 105 105 ARG ARG B . n B 1 109 PHE 109 106 106 PHE PHE B . n B 1 110 SER 110 107 107 SER SER B . n B 1 111 CYS 111 108 108 CYS CYS B . n B 1 112 VAL 112 109 109 VAL VAL B . n B 1 113 PHE 113 110 110 PHE PHE B . n B 1 114 VAL 114 111 111 VAL VAL B . n B 1 115 ARG 115 112 112 ARG ARG B . n B 1 116 GLU 116 113 113 GLU GLU B . n B 1 117 LYS 117 114 114 LYS LYS B . n B 1 118 SER 118 115 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 45 A MSE 42 ? MET SELENOMETHIONINE 2 A MSE 56 A MSE 53 ? MET SELENOMETHIONINE 3 A MSE 97 A MSE 94 ? MET SELENOMETHIONINE 4 B MSE 45 B MSE 42 ? MET SELENOMETHIONINE 5 B MSE 56 B MSE 53 ? MET SELENOMETHIONINE 6 B MSE 97 B MSE 94 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,E 2 1,3 B,D,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2470 ? 1 MORE -30 ? 1 'SSA (A^2)' 11320 ? 2 'ABSA (A^2)' 3200 ? 2 MORE -29 ? 2 'SSA (A^2)' 11420 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 85.4300000000 -1.0000000000 0.0000000000 0.0000000000 85.4300000000 0.0000000000 0.0000000000 -1.0000000000 33.9200000000 3 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0.0000000000 -1.0000000000 0.0000000000 85.4300000000 -1.0000000000 0.0000000000 0.0000000000 85.4300000000 0.0000000000 0.0000000000 -1.0000000000 101.7600000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 53.6192 36.2857 20.1468 0.4669 0.4931 0.7329 -0.0029 0.1510 -0.0259 2.9263 1.6905 7.2490 -1.7418 1.5687 0.9130 -0.3959 -0.0536 1.4370 0.4844 0.2824 2.0261 -0.5854 -1.1594 -0.1999 'X-RAY DIFFRACTION' 2 ? refined 55.4860 19.9776 5.3244 0.2528 0.2505 0.2613 0.0157 -0.0175 0.0461 0.7745 2.0646 3.0470 0.8798 -0.1682 1.5272 -0.0438 0.0906 0.0060 -0.1536 0.0159 0.1459 -0.0466 -0.1466 -0.0030 'X-RAY DIFFRACTION' 3 ? refined 46.7916 6.6911 14.4851 0.6507 0.6365 0.5786 -0.0820 0.0451 0.0540 9.8557 4.3970 3.1659 5.3350 5.3961 2.3787 0.6339 0.1890 -0.0076 0.5583 0.0755 -0.1335 -0.4475 -1.0952 -0.0313 'X-RAY DIFFRACTION' 4 ? refined 54.6835 13.5804 7.8448 0.3509 0.2707 0.2109 -0.0744 -0.0333 0.0336 0.3106 1.4435 3.3104 -0.0631 -0.5058 -0.6215 -0.1600 -0.1302 -0.1302 -0.0346 0.2270 0.0196 0.8128 -0.2320 0.0565 'X-RAY DIFFRACTION' 5 ? refined 60.5653 14.3628 11.2961 0.2607 0.3355 0.2477 -0.0861 -0.0608 0.0586 5.3739 8.4278 9.9747 -3.5558 -6.9950 2.7465 0.2909 -0.9312 0.8176 0.6990 0.2352 -0.8345 -0.9054 0.7584 -0.2898 'X-RAY DIFFRACTION' 6 ? refined 68.5957 22.5546 52.1667 0.2123 0.5136 0.3586 0.0757 0.0434 -0.0276 3.0464 3.2792 2.6274 3.0846 1.3525 1.9108 0.2022 0.6751 -0.6223 -0.5230 0.1340 -1.0269 0.3662 1.9837 -1.3223 'X-RAY DIFFRACTION' 7 ? refined 50.4217 18.2834 51.5940 0.2000 0.2050 0.2089 -0.0020 0.0055 0.0343 2.5796 0.1388 1.5559 0.3823 0.3471 0.5284 0.0139 -0.1662 -0.1988 0.0739 0.0298 -0.0436 -0.0289 -0.0848 -0.0064 'X-RAY DIFFRACTION' 8 ? refined 42.0752 18.1603 36.8427 0.3401 0.4596 0.2522 -0.0563 0.0023 -0.0176 2.4785 3.1913 1.9595 1.4823 -1.1688 -1.5288 -0.0514 0.6222 -0.0587 -0.3194 0.1760 0.0593 -0.0706 -0.0730 0.0471 'X-RAY DIFFRACTION' 9 ? refined 38.0104 21.9464 47.8752 0.1811 0.2465 0.2303 0.0350 -0.0302 0.0237 3.5111 2.8811 3.9702 1.4604 -0.9298 -3.2958 -0.0427 -0.1008 0.0923 0.1945 -0.0430 0.1095 -0.1367 0.0070 0.0640 'X-RAY DIFFRACTION' 10 ? refined 53.2395 21.6072 41.0488 0.2395 0.2095 0.1486 -0.0260 -0.0289 0.0141 9.0464 4.0911 3.9818 -3.1814 -5.1183 2.5326 0.3063 0.0700 0.3821 -0.1285 0.0133 -0.2429 -0.1907 0.0681 -0.1216 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 4:11)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 12:66)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 67:75)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 76:106)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 107:114)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain B and resid 5:12)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain B and resid 13:55)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain B and resid 56:75)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain B and resid 76:94)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain B and resid 95:114)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELX 'model building' . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 Coot 'model building' . ? 6 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 7 HKL-3000 'data reduction' . ? 8 HKL-3000 'data scaling' . ? 9 SHELX phasing . ? 10 DM phasing . ? 11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 74 ? ? 75.73 -27.88 2 1 GLN A 102 ? ? 56.37 -125.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ASN 2 ? A ASN 5 6 1 Y 1 A ILE 3 ? A ILE 6 7 1 Y 1 A SER 115 ? A SER 118 8 1 Y 1 B SER -2 ? B SER 1 9 1 Y 1 B ASN -1 ? B ASN 2 10 1 Y 1 B ALA 0 ? B ALA 3 11 1 Y 1 B MSE 1 ? B MSE 4 12 1 Y 1 B ASN 2 ? B ASN 5 13 1 Y 1 B ILE 3 ? B ILE 6 14 1 Y 1 B GLN 4 ? B GLN 7 15 1 Y 1 B SER 115 ? B SER 118 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 116 1 GOL GOL A . D 2 GOL 1 116 1 GOL GOL B . E 3 HOH 1 117 1 HOH HOH A . E 3 HOH 2 118 5 HOH HOH A . E 3 HOH 3 119 10 HOH HOH A . E 3 HOH 4 120 11 HOH HOH A . E 3 HOH 5 121 15 HOH HOH A . E 3 HOH 6 122 16 HOH HOH A . E 3 HOH 7 123 19 HOH HOH A . E 3 HOH 8 124 20 HOH HOH A . E 3 HOH 9 125 22 HOH HOH A . E 3 HOH 10 126 23 HOH HOH A . E 3 HOH 11 127 24 HOH HOH A . E 3 HOH 12 128 25 HOH HOH A . E 3 HOH 13 129 27 HOH HOH A . E 3 HOH 14 130 29 HOH HOH A . E 3 HOH 15 131 31 HOH HOH A . E 3 HOH 16 132 34 HOH HOH A . E 3 HOH 17 133 35 HOH HOH A . E 3 HOH 18 134 36 HOH HOH A . E 3 HOH 19 135 39 HOH HOH A . E 3 HOH 20 136 40 HOH HOH A . E 3 HOH 21 137 41 HOH HOH A . E 3 HOH 22 138 42 HOH HOH A . E 3 HOH 23 139 43 HOH HOH A . E 3 HOH 24 140 44 HOH HOH A . E 3 HOH 25 141 47 HOH HOH A . E 3 HOH 26 142 49 HOH HOH A . E 3 HOH 27 143 51 HOH HOH A . E 3 HOH 28 144 53 HOH HOH A . F 3 HOH 1 117 2 HOH HOH B . F 3 HOH 2 118 3 HOH HOH B . F 3 HOH 3 119 4 HOH HOH B . F 3 HOH 4 120 6 HOH HOH B . F 3 HOH 5 121 7 HOH HOH B . F 3 HOH 6 122 8 HOH HOH B . F 3 HOH 7 123 9 HOH HOH B . F 3 HOH 8 124 12 HOH HOH B . F 3 HOH 9 125 13 HOH HOH B . F 3 HOH 10 126 14 HOH HOH B . F 3 HOH 11 127 17 HOH HOH B . F 3 HOH 12 128 18 HOH HOH B . F 3 HOH 13 129 21 HOH HOH B . F 3 HOH 14 130 26 HOH HOH B . F 3 HOH 15 131 28 HOH HOH B . F 3 HOH 16 132 30 HOH HOH B . F 3 HOH 17 133 32 HOH HOH B . F 3 HOH 18 134 33 HOH HOH B . F 3 HOH 19 135 37 HOH HOH B . F 3 HOH 20 136 38 HOH HOH B . F 3 HOH 21 137 45 HOH HOH B . F 3 HOH 22 138 46 HOH HOH B . F 3 HOH 23 139 48 HOH HOH B . F 3 HOH 24 140 50 HOH HOH B . F 3 HOH 25 141 52 HOH HOH B . #