HEADER HYDROLASE 27-AUG-10 3OMX TITLE CRYSTAL STRUCTURE OF SSU72 WITH VANADATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG14216; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LD40846P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG14216, DMEL_CG14216; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSITION STATE, PHOSPHATASE, LOW MOLECULAR WEIGHT PROTEIN TYROSINE KEYWDS 2 PHOSPHATASE, DEPHOSPHORYLATION, RNA POLYMERASE II, PTA1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,M.ZHANG,Y.ZHANG REVDAT 4 06-SEP-23 3OMX 1 REMARK REVDAT 3 08-OCT-14 3OMX 1 AUTHOR VERSN REVDAT 2 09-MAR-11 3OMX 1 JRNL REVDAT 1 19-JAN-11 3OMX 0 JRNL AUTH Y.ZHANG,M.ZHANG,Y.ZHANG JRNL TITL CRYSTAL STRUCTURE OF SSU72, AN ESSENTIAL EUKARYOTIC JRNL TITL 2 PHOSPHATASE SPECIFIC FOR THE C-TERMINAL DOMAIN OF RNA JRNL TITL 3 POLYMERASE II, IN COMPLEX WITH A TRANSITION STATE ANALOGUE. JRNL REF BIOCHEM.J. V. 434 435 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 21204787 JRNL DOI 10.1042/BJ20101471 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6666 - 5.8846 0.56 2915 150 0.1847 0.2184 REMARK 3 2 5.8846 - 4.6720 0.54 2781 152 0.1842 0.2571 REMARK 3 3 4.6720 - 4.0817 0.53 2788 121 0.1704 0.2360 REMARK 3 4 4.0817 - 3.7087 0.53 2747 137 0.1901 0.2249 REMARK 3 5 3.7087 - 3.4429 0.53 2724 158 0.1864 0.2678 REMARK 3 6 3.4429 - 3.2400 0.53 2707 160 0.2124 0.2931 REMARK 3 7 3.2400 - 3.0778 0.52 2699 154 0.2191 0.2925 REMARK 3 8 3.0778 - 2.9438 0.52 2724 134 0.2189 0.3070 REMARK 3 9 2.9438 - 2.8305 0.52 2679 155 0.2380 0.3512 REMARK 3 10 2.8305 - 2.7328 0.52 2691 143 0.2372 0.3469 REMARK 3 11 2.7328 - 2.6474 0.52 2691 142 0.2262 0.3321 REMARK 3 12 2.6474 - 2.5717 0.52 2701 149 0.2304 0.2749 REMARK 3 13 2.5717 - 2.5040 0.52 2678 137 0.2268 0.3165 REMARK 3 14 2.5040 - 2.4429 0.52 2666 137 0.2472 0.3130 REMARK 3 15 2.4429 - 2.3874 0.52 2700 137 0.2532 0.3368 REMARK 3 16 2.3874 - 2.3366 0.46 2370 129 0.2705 0.3457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 62.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.66390 REMARK 3 B22 (A**2) : 2.86040 REMARK 3 B33 (A**2) : 4.80350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.032 6332 REMARK 3 ANGLE : 2.914 8516 REMARK 3 CHIRALITY : 0.201 936 REMARK 3 PLANARITY : 0.012 1116 REMARK 3 DIHEDRAL : 22.424 2404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000061317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45695 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.337 REMARK 200 RESOLUTION RANGE LOW (A) : 48.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 36.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.76100 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 10% ISOPROPANOL, 14 REMARK 280 -18% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 78.80800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.15450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.80800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.15450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET C 48 O HOH C 230 2.01 REMARK 500 O LYS C 74 OG1 THR C 78 2.17 REMARK 500 O GLN B 100 O HOH B 213 2.19 REMARK 500 O GLU D 113 OD1 ASN D 139 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 26 CB PHE A 26 CG -0.137 REMARK 500 GLU A 97 CD GLU A 97 OE1 0.092 REMARK 500 GLU A 114 CG GLU A 114 CD 0.100 REMARK 500 GLU A 147 CG GLU A 147 CD 0.098 REMARK 500 ASP A 148 CG ASP A 148 OD2 0.150 REMARK 500 ALA A 153 CA ALA A 153 CB -0.199 REMARK 500 VAL A 155 CB VAL A 155 CG2 0.163 REMARK 500 GLU A 175 CG GLU A 175 CD 0.104 REMARK 500 GLU A 182 CB GLU A 182 CG 0.164 REMARK 500 GLU A 182 CG GLU A 182 CD 0.140 REMARK 500 VAL A 187 CB VAL A 187 CG2 0.170 REMARK 500 LYS B 93 CB LYS B 93 CG -0.181 REMARK 500 PHE C 26 CB PHE C 26 CG -0.123 REMARK 500 GLU C 125 CD GLU C 125 OE1 0.082 REMARK 500 GLU C 147 CD GLU C 147 OE1 0.079 REMARK 500 GLU C 175 CB GLU C 175 CG 0.171 REMARK 500 GLU C 175 CG GLU C 175 CD 0.135 REMARK 500 GLU D 22 CB GLU D 22 CG -0.130 REMARK 500 GLU D 63 CB GLU D 63 CG 0.132 REMARK 500 GLU D 63 CG GLU D 63 CD 0.099 REMARK 500 ARG D 67 CA ARG D 67 CB 0.134 REMARK 500 GLU D 70 CD GLU D 70 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 7 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU A 7 CB - CG - CD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 CYS A 13 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 LYS A 93 CD - CE - NZ ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 98 CG - CD - NE ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 MET A 163 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 186 CG - CD - NE ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU B 7 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU B 7 CB - CG - CD1 ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU B 7 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 SER B 15 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 ASN B 16 C - N - CA ANGL. DEV. = -24.0 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 68 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 90 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 90 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 119 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET B 151 CG - SD - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 MET B 163 CA - CB - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP B 172 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP B 172 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 184 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 186 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 98 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 98 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG C 133 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP C 141 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 148 CB - CG - OD1 ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP C 148 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 MET C 163 CA - CB - CG ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP C 172 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP C 174 CB - CG - OD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 CYS D 13 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 SER D 15 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 ARG D 67 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP D 68 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 LYS D 93 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP D 148 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 13 -151.73 -120.68 REMARK 500 ASN A 18 -81.16 -113.32 REMARK 500 MET A 48 113.43 68.21 REMARK 500 ASP A 73 72.53 170.54 REMARK 500 SER A 126 10.45 -53.38 REMARK 500 GLU A 128 133.56 178.01 REMARK 500 VAL A 130 49.74 -109.77 REMARK 500 ASN A 132 48.02 25.03 REMARK 500 ASP A 168 55.59 -158.53 REMARK 500 CYS B 13 -152.35 -122.81 REMARK 500 MET B 17 -57.61 -130.63 REMARK 500 ASN B 18 -87.92 -106.49 REMARK 500 MET B 48 -75.56 69.11 REMARK 500 ASP B 73 76.44 168.33 REMARK 500 VAL B 130 21.02 -160.90 REMARK 500 ASN B 132 44.40 32.70 REMARK 500 CYS C 13 -144.62 -119.35 REMARK 500 ASN C 18 -82.67 -113.10 REMARK 500 MET C 48 116.46 95.15 REMARK 500 ASP C 73 88.72 -163.05 REMARK 500 GLN C 100 -7.90 -57.33 REMARK 500 ASN C 132 55.33 24.59 REMARK 500 LEU C 193 -167.24 -119.88 REMARK 500 LEU D 7 -150.15 -91.55 REMARK 500 CYS D 13 -145.98 -125.57 REMARK 500 ASN D 16 69.90 -117.99 REMARK 500 MET D 17 -50.67 -120.65 REMARK 500 ASN D 18 -84.90 -112.34 REMARK 500 ASP D 73 89.91 -173.27 REMARK 500 MET D 122 -87.06 -37.48 REMARK 500 HIS D 123 -41.63 -28.39 REMARK 500 SER D 126 -11.81 -49.24 REMARK 500 MET D 127 78.56 -100.86 REMARK 500 ASP D 131 -13.56 -162.09 REMARK 500 ASN D 132 40.71 21.77 REMARK 500 VAL D 140 76.15 -166.44 REMARK 500 ASP D 144 75.44 -64.71 REMARK 500 SER D 166 -179.88 -64.37 REMARK 500 THR D 167 -21.42 -152.02 REMARK 500 LEU D 169 -38.22 -28.29 REMARK 500 ILE D 173 -75.17 -42.36 REMARK 500 GLU D 175 -76.87 -69.68 REMARK 500 GLU D 182 -82.70 -78.17 REMARK 500 ARG D 183 -16.76 -46.25 REMARK 500 LYS D 185 45.42 82.62 REMARK 500 LEU D 189 150.88 -49.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 49 PHE A 50 143.58 REMARK 500 MET A 127 GLU A 128 145.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMV RELATED DB: PDB REMARK 900 LOW RESOLUTION STRUCTURE REMARK 900 RELATED ID: 3OMW RELATED DB: PDB REMARK 900 APO STRUCTURE DBREF 3OMX A 6 195 UNP Q9VWE4 Q9VWE4_DROME 6 195 DBREF 3OMX B 6 195 UNP Q9VWE4 Q9VWE4_DROME 6 195 DBREF 3OMX C 6 195 UNP Q9VWE4 Q9VWE4_DROME 6 195 DBREF 3OMX D 6 195 UNP Q9VWE4 Q9VWE4_DROME 6 195 SEQRES 1 A 190 LYS LEU ALA VAL ALA VAL VAL CYS SER SER ASN MET ASN SEQRES 2 A 190 ARG SER MET GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY SEQRES 3 A 190 PHE ASN VAL ARG SER TYR GLY THR GLY GLU ARG VAL LYS SEQRES 4 A 190 LEU PRO GLY MET ALA PHE ASP LYS PRO ASN VAL TYR GLU SEQRES 5 A 190 PHE GLY THR LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SEQRES 6 A 190 SER LYS ASP LYS GLU PHE TYR THR GLN ASN GLY LEU LEU SEQRES 7 A 190 HIS MET LEU ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO SEQRES 8 A 190 GLU ARG PHE GLN ASP THR LYS GLU GLN PHE ASP ILE ILE SEQRES 9 A 190 VAL THR VAL GLU GLU ARG VAL TYR ASP LEU VAL VAL MET SEQRES 10 A 190 HIS MET GLU SER MET GLU SER VAL ASP ASN ARG PRO VAL SEQRES 11 A 190 HIS VAL LEU ASN VAL ASP VAL VAL ASP ASN ALA GLU ASP SEQRES 12 A 190 ALA LEU MET GLY ALA PHE VAL ILE THR ASP MET ILE ASN SEQRES 13 A 190 MET MET ALA LYS SER THR ASP LEU ASP ASN ASP ILE ASP SEQRES 14 A 190 GLU LEU ILE GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL SEQRES 15 A 190 ILE LEU HIS SER VAL LEU PHE TYR SEQRES 1 B 190 LYS LEU ALA VAL ALA VAL VAL CYS SER SER ASN MET ASN SEQRES 2 B 190 ARG SER MET GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY SEQRES 3 B 190 PHE ASN VAL ARG SER TYR GLY THR GLY GLU ARG VAL LYS SEQRES 4 B 190 LEU PRO GLY MET ALA PHE ASP LYS PRO ASN VAL TYR GLU SEQRES 5 B 190 PHE GLY THR LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SEQRES 6 B 190 SER LYS ASP LYS GLU PHE TYR THR GLN ASN GLY LEU LEU SEQRES 7 B 190 HIS MET LEU ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO SEQRES 8 B 190 GLU ARG PHE GLN ASP THR LYS GLU GLN PHE ASP ILE ILE SEQRES 9 B 190 VAL THR VAL GLU GLU ARG VAL TYR ASP LEU VAL VAL MET SEQRES 10 B 190 HIS MET GLU SER MET GLU SER VAL ASP ASN ARG PRO VAL SEQRES 11 B 190 HIS VAL LEU ASN VAL ASP VAL VAL ASP ASN ALA GLU ASP SEQRES 12 B 190 ALA LEU MET GLY ALA PHE VAL ILE THR ASP MET ILE ASN SEQRES 13 B 190 MET MET ALA LYS SER THR ASP LEU ASP ASN ASP ILE ASP SEQRES 14 B 190 GLU LEU ILE GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL SEQRES 15 B 190 ILE LEU HIS SER VAL LEU PHE TYR SEQRES 1 C 190 LYS LEU ALA VAL ALA VAL VAL CYS SER SER ASN MET ASN SEQRES 2 C 190 ARG SER MET GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY SEQRES 3 C 190 PHE ASN VAL ARG SER TYR GLY THR GLY GLU ARG VAL LYS SEQRES 4 C 190 LEU PRO GLY MET ALA PHE ASP LYS PRO ASN VAL TYR GLU SEQRES 5 C 190 PHE GLY THR LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SEQRES 6 C 190 SER LYS ASP LYS GLU PHE TYR THR GLN ASN GLY LEU LEU SEQRES 7 C 190 HIS MET LEU ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO SEQRES 8 C 190 GLU ARG PHE GLN ASP THR LYS GLU GLN PHE ASP ILE ILE SEQRES 9 C 190 VAL THR VAL GLU GLU ARG VAL TYR ASP LEU VAL VAL MET SEQRES 10 C 190 HIS MET GLU SER MET GLU SER VAL ASP ASN ARG PRO VAL SEQRES 11 C 190 HIS VAL LEU ASN VAL ASP VAL VAL ASP ASN ALA GLU ASP SEQRES 12 C 190 ALA LEU MET GLY ALA PHE VAL ILE THR ASP MET ILE ASN SEQRES 13 C 190 MET MET ALA LYS SER THR ASP LEU ASP ASN ASP ILE ASP SEQRES 14 C 190 GLU LEU ILE GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL SEQRES 15 C 190 ILE LEU HIS SER VAL LEU PHE TYR SEQRES 1 D 190 LYS LEU ALA VAL ALA VAL VAL CYS SER SER ASN MET ASN SEQRES 2 D 190 ARG SER MET GLU ALA HIS ASN PHE LEU ALA LYS LYS GLY SEQRES 3 D 190 PHE ASN VAL ARG SER TYR GLY THR GLY GLU ARG VAL LYS SEQRES 4 D 190 LEU PRO GLY MET ALA PHE ASP LYS PRO ASN VAL TYR GLU SEQRES 5 D 190 PHE GLY THR LYS TYR GLU ASP ILE TYR ARG ASP LEU GLU SEQRES 6 D 190 SER LYS ASP LYS GLU PHE TYR THR GLN ASN GLY LEU LEU SEQRES 7 D 190 HIS MET LEU ASP ARG ASN ARG ARG ILE LYS LYS CYS PRO SEQRES 8 D 190 GLU ARG PHE GLN ASP THR LYS GLU GLN PHE ASP ILE ILE SEQRES 9 D 190 VAL THR VAL GLU GLU ARG VAL TYR ASP LEU VAL VAL MET SEQRES 10 D 190 HIS MET GLU SER MET GLU SER VAL ASP ASN ARG PRO VAL SEQRES 11 D 190 HIS VAL LEU ASN VAL ASP VAL VAL ASP ASN ALA GLU ASP SEQRES 12 D 190 ALA LEU MET GLY ALA PHE VAL ILE THR ASP MET ILE ASN SEQRES 13 D 190 MET MET ALA LYS SER THR ASP LEU ASP ASN ASP ILE ASP SEQRES 14 D 190 GLU LEU ILE GLN GLU PHE GLU GLU ARG ARG LYS ARG VAL SEQRES 15 D 190 ILE LEU HIS SER VAL LEU PHE TYR HET VO4 A 300 5 HET VO4 B 300 5 HET VO4 C 300 5 HET VO4 D 300 5 HETNAM VO4 VANADATE ION FORMUL 5 VO4 4(O4 V 3-) FORMUL 9 HOH *171(H2 O) HELIX 1 1 ASN A 18 LYS A 30 1 13 HELIX 2 2 LYS A 61 ASN A 80 1 20 HELIX 3 3 GLY A 81 ARG A 91 1 11 HELIX 4 4 ARG A 98 THR A 102 5 5 HELIX 5 5 GLU A 113 SER A 126 1 14 HELIX 6 6 ASN A 145 ALA A 164 1 20 HELIX 7 7 ASP A 168 LYS A 185 1 18 HELIX 8 8 ASN B 18 LYS B 30 1 13 HELIX 9 9 LYS B 61 ASN B 80 1 20 HELIX 10 10 GLY B 81 LYS B 93 1 13 HELIX 11 11 ARG B 98 THR B 102 5 5 HELIX 12 12 GLU B 113 SER B 126 1 14 HELIX 13 13 ASN B 145 SER B 166 1 22 HELIX 14 14 ASP B 168 ARG B 184 1 17 HELIX 15 15 ASN C 18 LYS C 30 1 13 HELIX 16 16 LYS C 61 ASN C 80 1 20 HELIX 17 17 GLY C 81 LYS C 93 1 13 HELIX 18 18 ARG C 98 THR C 102 5 5 HELIX 19 19 GLU C 113 MET C 127 1 15 HELIX 20 20 ASN C 145 ALA C 164 1 20 HELIX 21 21 ASP C 168 LYS C 185 1 18 HELIX 22 22 ASN D 18 GLY D 31 1 14 HELIX 23 23 LYS D 61 ASN D 80 1 20 HELIX 24 24 GLY D 81 LYS D 93 1 13 HELIX 25 25 GLU D 113 MET D 127 1 15 HELIX 26 26 ASN D 145 SER D 166 1 22 HELIX 27 27 ASP D 168 LYS D 185 1 18 SHEET 1 A 5 ASN A 33 GLY A 38 0 SHEET 2 A 5 ALA A 8 CYS A 13 1 N VAL A 9 O ASN A 33 SHEET 3 A 5 ILE A 108 THR A 111 1 O VAL A 110 N ALA A 10 SHEET 4 A 5 PRO A 134 ASN A 139 1 O LEU A 138 N ILE A 109 SHEET 5 A 5 LEU A 189 PHE A 194 -1 O SER A 191 N VAL A 137 SHEET 1 B 2 VAL A 43 LEU A 45 0 SHEET 2 B 2 ASN A 54 TYR A 56 -1 O ASN A 54 N LEU A 45 SHEET 1 C 5 ASN B 33 GLY B 38 0 SHEET 2 C 5 ALA B 8 CYS B 13 1 N VAL B 9 O ASN B 33 SHEET 3 C 5 ILE B 108 THR B 111 1 O VAL B 110 N ALA B 10 SHEET 4 C 5 PRO B 134 ASN B 139 1 O LEU B 138 N THR B 111 SHEET 5 C 5 LEU B 189 PHE B 194 -1 O SER B 191 N VAL B 137 SHEET 1 D 2 VAL B 43 LEU B 45 0 SHEET 2 D 2 ASN B 54 TYR B 56 -1 O ASN B 54 N LEU B 45 SHEET 1 E 5 ASN C 33 GLY C 38 0 SHEET 2 E 5 ALA C 8 CYS C 13 1 N VAL C 9 O ASN C 33 SHEET 3 E 5 ILE C 108 THR C 111 1 O VAL C 110 N ALA C 10 SHEET 4 E 5 PRO C 134 ASN C 139 1 O HIS C 136 N ILE C 109 SHEET 5 E 5 LEU C 189 PHE C 194 -1 O LEU C 193 N VAL C 135 SHEET 1 F 2 VAL C 43 LEU C 45 0 SHEET 2 F 2 ASN C 54 TYR C 56 -1 O ASN C 54 N LEU C 45 SHEET 1 G 5 ASN D 33 GLY D 38 0 SHEET 2 G 5 ALA D 8 CYS D 13 1 N VAL D 9 O ASN D 33 SHEET 3 G 5 ILE D 108 THR D 111 1 O VAL D 110 N ALA D 10 SHEET 4 G 5 PRO D 134 LEU D 138 1 O LEU D 138 N THR D 111 SHEET 5 G 5 HIS D 190 PHE D 194 -1 O SER D 191 N VAL D 137 SHEET 1 H 2 VAL D 43 LEU D 45 0 SHEET 2 H 2 ASN D 54 TYR D 56 -1 O TYR D 56 N VAL D 43 SITE 1 AC1 9 CYS A 13 SER A 14 SER A 15 ASN A 16 SITE 2 AC1 9 MET A 17 ASN A 18 ARG A 19 ASP A 144 SITE 3 AC1 9 HOH A 250 SITE 1 AC2 9 CYS B 13 SER B 14 SER B 15 ASN B 16 SITE 2 AC2 9 MET B 17 ASN B 18 ARG B 19 ASP B 144 SITE 3 AC2 9 HOH B 242 SITE 1 AC3 9 CYS C 13 SER C 14 SER C 15 ASN C 16 SITE 2 AC3 9 MET C 17 ASN C 18 ARG C 19 ASP C 144 SITE 3 AC3 9 HOH C 233 SITE 1 AC4 8 CYS D 13 SER D 14 SER D 15 MET D 17 SITE 2 AC4 8 ASN D 18 ARG D 19 ASP D 144 HOH D 221 CRYST1 157.616 102.309 65.816 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015194 0.00000