HEADER LIGASE 28-AUG-10 3ONG TITLE CRYSTAL STRUCTURE OF UBA2UFD-UBC9: INSIGHTS INTO E1-E2 INTERACTIONS IN TITLE 2 SUMO PATHWAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-ACTIVATING ENZYME E1-LIKE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 439-563; COMPND 5 SYNONYM: SMT3-ACTIVATING ENZYME SUBUNIT 2, POLYMERASE-INTERACTING COMPND 6 PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUMO-CONJUGATING ENZYME UBC9; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: UBIQUITIN-CONJUGATING ENZYME E2-18 KDA, UBIQUITIN-PROTEIN COMPND 12 LIGASE, UBIQUITIN CARRIER PROTEIN 9; COMPND 13 EC: 6.3.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: UBA2, PIP2, UAL1, YDR390C, D9509.10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: UBC9, YDL064W; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,A.M.TAHERBHOY,H.W.HUNT,S.N.SEYEDIN,D.W.MILLER,D.T.HUANG, AUTHOR 2 B.A.SCHULMAN REVDAT 6 21-FEB-24 3ONG 1 SEQADV REVDAT 5 17-JUL-19 3ONG 1 REMARK REVDAT 4 08-NOV-17 3ONG 1 REMARK REVDAT 3 18-SEP-13 3ONG 1 REMARK REVDAT 2 23-JAN-13 3ONG 1 JRNL VERSN REVDAT 1 12-JAN-11 3ONG 0 JRNL AUTH J.WANG,A.M.TAHERBHOY,H.W.HUNT,S.N.SEYEDIN,D.W.MILLER, JRNL AUTH 2 D.J.MILLER,D.T.HUANG,B.A.SCHULMAN JRNL TITL CRYSTAL STRUCTURE OF UBA2(UFD)-UBC9: INSIGHTS INTO E1-E2 JRNL TITL 2 INTERACTIONS IN SUMO PATHWAYS. JRNL REF PLOS ONE V. 5 15805 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 21209884 JRNL DOI 10.1371/JOURNAL.PONE.0015805 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 21393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.568 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.582 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4369 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5935 ; 1.082 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;33.466 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;17.917 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;24.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3354 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2719 ; 0.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4388 ; 0.510 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1650 ; 0.768 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1547 ; 1.351 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7983 80.5915 47.3162 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.2667 REMARK 3 T33: 0.2647 T12: -0.0298 REMARK 3 T13: -0.0065 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 5.2878 L22: 8.9888 REMARK 3 L33: 6.9421 L12: -2.1229 REMARK 3 L13: 1.4256 L23: -2.4864 REMARK 3 S TENSOR REMARK 3 S11: 0.2093 S12: -0.0340 S13: 0.2799 REMARK 3 S21: -0.0780 S22: -0.2624 S23: -0.5850 REMARK 3 S31: 0.0592 S32: 0.1601 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4233 87.1024 23.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.2456 REMARK 3 T33: 0.1241 T12: 0.0099 REMARK 3 T13: 0.0966 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.4202 L22: 8.4510 REMARK 3 L33: 4.0061 L12: 0.4118 REMARK 3 L13: 1.2949 L23: 1.4878 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.3456 S13: -0.0317 REMARK 3 S21: -0.4366 S22: -0.0021 S23: 0.0536 REMARK 3 S31: 0.2882 S32: 0.0966 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -10 C 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8640 54.4744 21.0474 REMARK 3 T TENSOR REMARK 3 T11: 1.1219 T22: 0.2787 REMARK 3 T33: 0.2966 T12: -0.1723 REMARK 3 T13: -0.1919 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 9.1461 L22: 9.6742 REMARK 3 L33: 8.2494 L12: 2.0174 REMARK 3 L13: 3.0288 L23: 4.6933 REMARK 3 S TENSOR REMARK 3 S11: 0.7514 S12: 0.0059 S13: -0.6305 REMARK 3 S21: 0.9666 S22: -0.2173 S23: -0.2487 REMARK 3 S31: 1.2376 S32: -0.3339 S33: -0.5341 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -10 D 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8532 48.1020 54.6122 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.3386 REMARK 3 T33: 0.1744 T12: -0.0790 REMARK 3 T13: -0.0693 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.1273 L22: 9.2890 REMARK 3 L33: 2.6480 L12: -0.2045 REMARK 3 L13: 0.4765 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: 0.0785 S13: -0.0393 REMARK 3 S21: 1.0613 S22: -0.1280 S23: -0.1743 REMARK 3 S31: 0.3584 S32: -0.2930 S33: -0.0541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ONG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : 1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22536 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1 M BIS-TRIS PH 5.5, REMARK 280 0.2 M LI2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.01900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 ASN A 553 REMARK 465 ASN A 554 REMARK 465 SER A 555 REMARK 465 PRO A 556 REMARK 465 SER A 557 REMARK 465 LYS A 558 REMARK 465 ASN A 559 REMARK 465 GLU A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 GLU A 563 REMARK 465 GLY B -1 REMARK 465 GLY C 437 REMARK 465 SER C 438 REMARK 465 ALA C 552 REMARK 465 ASN C 553 REMARK 465 ASN C 554 REMARK 465 SER C 555 REMARK 465 PRO C 556 REMARK 465 SER C 557 REMARK 465 LYS C 558 REMARK 465 ASN C 559 REMARK 465 GLU C 560 REMARK 465 GLU C 561 REMARK 465 GLU C 562 REMARK 465 GLU C 563 REMARK 465 GLY D -1 REMARK 465 LYS D 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 ASP A 532 CG OD1 OD2 REMARK 470 GLU A 534 CG CD OE1 OE2 REMARK 470 LEU A 535 CG CD1 CD2 REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 SER B 0 OG REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 SER C 439 OG REMARK 470 LYS C 440 CG CD CE NZ REMARK 470 LYS C 457 CG CD CE NZ REMARK 470 ASP C 518 CG OD1 OD2 REMARK 470 THR C 519 OG1 CG2 REMARK 470 MET C 520 CG SD CE REMARK 470 ILE C 521 CG1 CG2 CD1 REMARK 470 LYS C 523 CG CD CE NZ REMARK 470 GLU C 534 CG CD OE1 OE2 REMARK 470 LYS C 551 CG CD CE NZ REMARK 470 SER D 0 OG REMARK 470 LYS D 141 CG CD CE NZ REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 LYS D 153 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 440 39.99 -93.11 REMARK 500 TYR A 489 -17.57 -45.24 REMARK 500 ASN A 538 22.67 83.61 REMARK 500 HIS B 83 140.14 -174.79 REMARK 500 GLN B 101 -107.13 -115.82 REMARK 500 SER B 127 58.69 -140.29 REMARK 500 ASN B 140 63.45 -150.21 REMARK 500 GLN C 483 36.55 73.63 REMARK 500 GLN D 101 -92.24 -128.89 REMARK 500 ASN D 126 21.23 -79.73 REMARK 500 SER D 127 59.44 -151.91 REMARK 500 ASN D 140 32.23 -154.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ONH RELATED DB: PDB DBREF 3ONG A 439 563 UNP P52488 UBA2_YEAST 439 563 DBREF 3ONG B 1 157 UNP P50623 UBC9_YEAST 1 157 DBREF 3ONG C 439 563 UNP P52488 UBA2_YEAST 439 563 DBREF 3ONG D 1 157 UNP P50623 UBC9_YEAST 1 157 SEQADV 3ONG GLY A 437 UNP P52488 EXPRESSION TAG SEQADV 3ONG SER A 438 UNP P52488 EXPRESSION TAG SEQADV 3ONG GLY B -1 UNP P50623 EXPRESSION TAG SEQADV 3ONG SER B 0 UNP P50623 EXPRESSION TAG SEQADV 3ONG GLY C 437 UNP P52488 EXPRESSION TAG SEQADV 3ONG SER C 438 UNP P52488 EXPRESSION TAG SEQADV 3ONG GLY D -1 UNP P50623 EXPRESSION TAG SEQADV 3ONG SER D 0 UNP P50623 EXPRESSION TAG SEQRES 1 A 127 GLY SER SER LYS VAL CYS ARG GLY VAL ILE LYS LEU SER SEQRES 2 A 127 SER ASP CYS LEU ASN LYS MET LYS LEU SER ASP PHE VAL SEQRES 3 A 127 VAL LEU ILE ARG GLU LYS TYR SER TYR PRO GLN ASP ILE SEQRES 4 A 127 SER LEU LEU ASP ALA SER ASN GLN ARG LEU LEU PHE ASP SEQRES 5 A 127 TYR ASP PHE GLU ASP LEU ASN ASP ARG THR LEU SER GLU SEQRES 6 A 127 ILE ASN LEU GLY ASN GLY SER ILE ILE LEU PHE SER ASP SEQRES 7 A 127 GLU GLU GLY ASP THR MET ILE ARG LYS ALA ILE GLU LEU SEQRES 8 A 127 PHE LEU ASP VAL ASP ASP GLU LEU PRO CYS ASN THR CYS SEQRES 9 A 127 SER LEU PRO ASP VAL GLU VAL PRO LEU ILE LYS ALA ASN SEQRES 10 A 127 ASN SER PRO SER LYS ASN GLU GLU GLU GLU SEQRES 1 B 159 GLY SER MET SER SER LEU CYS LEU GLN ARG LEU GLN GLU SEQRES 2 B 159 GLU ARG LYS LYS TRP ARG LYS ASP HIS PRO PHE GLY PHE SEQRES 3 B 159 TYR ALA LYS PRO VAL LYS LYS ALA ASP GLY SER MET ASP SEQRES 4 B 159 LEU GLN LYS TRP GLU ALA GLY ILE PRO GLY LYS GLU GLY SEQRES 5 B 159 THR ASN TRP ALA GLY GLY VAL TYR PRO ILE THR VAL GLU SEQRES 6 B 159 TYR PRO ASN GLU TYR PRO SER LYS PRO PRO LYS VAL LYS SEQRES 7 B 159 PHE PRO ALA GLY PHE TYR HIS PRO ASN VAL TYR PRO SER SEQRES 8 B 159 GLY THR ILE CYS LEU SER ILE LEU ASN GLU ASP GLN ASP SEQRES 9 B 159 TRP ARG PRO ALA ILE THR LEU LYS GLN ILE VAL LEU GLY SEQRES 10 B 159 VAL GLN ASP LEU LEU ASP SER PRO ASN PRO ASN SER PRO SEQRES 11 B 159 ALA GLN GLU PRO ALA TRP ARG SER PHE SER ARG ASN LYS SEQRES 12 B 159 ALA GLU TYR ASP LYS LYS VAL LEU LEU GLN ALA LYS GLN SEQRES 13 B 159 TYR SER LYS SEQRES 1 C 127 GLY SER SER LYS VAL CYS ARG GLY VAL ILE LYS LEU SER SEQRES 2 C 127 SER ASP CYS LEU ASN LYS MET LYS LEU SER ASP PHE VAL SEQRES 3 C 127 VAL LEU ILE ARG GLU LYS TYR SER TYR PRO GLN ASP ILE SEQRES 4 C 127 SER LEU LEU ASP ALA SER ASN GLN ARG LEU LEU PHE ASP SEQRES 5 C 127 TYR ASP PHE GLU ASP LEU ASN ASP ARG THR LEU SER GLU SEQRES 6 C 127 ILE ASN LEU GLY ASN GLY SER ILE ILE LEU PHE SER ASP SEQRES 7 C 127 GLU GLU GLY ASP THR MET ILE ARG LYS ALA ILE GLU LEU SEQRES 8 C 127 PHE LEU ASP VAL ASP ASP GLU LEU PRO CYS ASN THR CYS SEQRES 9 C 127 SER LEU PRO ASP VAL GLU VAL PRO LEU ILE LYS ALA ASN SEQRES 10 C 127 ASN SER PRO SER LYS ASN GLU GLU GLU GLU SEQRES 1 D 159 GLY SER MET SER SER LEU CYS LEU GLN ARG LEU GLN GLU SEQRES 2 D 159 GLU ARG LYS LYS TRP ARG LYS ASP HIS PRO PHE GLY PHE SEQRES 3 D 159 TYR ALA LYS PRO VAL LYS LYS ALA ASP GLY SER MET ASP SEQRES 4 D 159 LEU GLN LYS TRP GLU ALA GLY ILE PRO GLY LYS GLU GLY SEQRES 5 D 159 THR ASN TRP ALA GLY GLY VAL TYR PRO ILE THR VAL GLU SEQRES 6 D 159 TYR PRO ASN GLU TYR PRO SER LYS PRO PRO LYS VAL LYS SEQRES 7 D 159 PHE PRO ALA GLY PHE TYR HIS PRO ASN VAL TYR PRO SER SEQRES 8 D 159 GLY THR ILE CYS LEU SER ILE LEU ASN GLU ASP GLN ASP SEQRES 9 D 159 TRP ARG PRO ALA ILE THR LEU LYS GLN ILE VAL LEU GLY SEQRES 10 D 159 VAL GLN ASP LEU LEU ASP SER PRO ASN PRO ASN SER PRO SEQRES 11 D 159 ALA GLN GLU PRO ALA TRP ARG SER PHE SER ARG ASN LYS SEQRES 12 D 159 ALA GLU TYR ASP LYS LYS VAL LEU LEU GLN ALA LYS GLN SEQRES 13 D 159 TYR SER LYS FORMUL 5 HOH *38(H2 O) HELIX 1 1 SER A 449 ASN A 454 1 6 HELIX 2 2 LYS A 457 SER A 470 1 14 HELIX 3 3 THR A 498 ASN A 503 5 6 HELIX 4 4 SER B 2 ASP B 19 1 18 HELIX 5 5 LEU B 94 ASN B 98 5 5 HELIX 6 6 THR B 108 SER B 122 1 15 HELIX 7 7 GLN B 130 ASN B 140 1 11 HELIX 8 8 ASN B 140 TYR B 155 1 16 HELIX 9 9 ASP C 451 MET C 456 1 6 HELIX 10 10 LYS C 457 TYR C 469 1 13 HELIX 11 11 THR C 498 ASN C 503 5 6 HELIX 12 12 SER D 2 ASP D 19 1 18 HELIX 13 13 LEU D 94 ASN D 98 5 5 HELIX 14 14 THR D 108 ASP D 121 1 14 HELIX 15 15 GLN D 130 ASN D 140 1 11 HELIX 16 16 ASN D 140 TYR D 155 1 16 SHEET 1 A 6 ARG A 484 ASP A 488 0 SHEET 2 A 6 ILE A 475 ASP A 479 -1 N LEU A 477 O PHE A 487 SHEET 3 A 6 ILE A 510 ASP A 514 -1 O LEU A 511 N LEU A 478 SHEET 4 A 6 ILE A 525 VAL A 531 -1 O LEU A 527 N ILE A 510 SHEET 5 A 6 CYS A 442 LEU A 448 1 N ILE A 446 O PHE A 528 SHEET 6 A 6 CYS A 540 SER A 541 -1 O SER A 541 N LYS A 447 SHEET 1 B 2 MET A 520 ARG A 522 0 SHEET 2 B 2 LEU A 549 LYS A 551 -1 O ILE A 550 N ILE A 521 SHEET 1 C 4 TYR B 25 LYS B 30 0 SHEET 2 C 4 MET B 36 PRO B 46 -1 O LYS B 40 N VAL B 29 SHEET 3 C 4 VAL B 57 GLU B 63 -1 O TYR B 58 N ILE B 45 SHEET 4 C 4 LYS B 74 LYS B 76 -1 O LYS B 74 N GLU B 63 SHEET 1 D 6 ARG C 484 ASP C 488 0 SHEET 2 D 6 ILE C 475 ASP C 479 -1 N LEU C 477 O PHE C 487 SHEET 3 D 6 ILE C 509 ASP C 514 -1 O LEU C 511 N LEU C 478 SHEET 4 D 6 ILE C 525 VAL C 531 -1 O LEU C 527 N ILE C 510 SHEET 5 D 6 CYS C 442 LEU C 448 1 N CYS C 442 O GLU C 526 SHEET 6 D 6 CYS C 540 SER C 541 -1 O SER C 541 N LYS C 447 SHEET 1 E 2 ILE C 521 ARG C 522 0 SHEET 2 E 2 LEU C 549 ILE C 550 -1 O ILE C 550 N ILE C 521 SHEET 1 F 4 TYR D 25 LYS D 30 0 SHEET 2 F 4 MET D 36 PRO D 46 -1 O GLU D 42 N LYS D 27 SHEET 3 F 4 VAL D 57 GLU D 63 -1 O TYR D 58 N ILE D 45 SHEET 4 F 4 LYS D 74 LYS D 76 -1 O LYS D 74 N GLU D 63 CISPEP 1 ASP A 533 GLU A 534 0 4.82 CISPEP 2 TYR B 68 PRO B 69 0 5.95 CISPEP 3 ASP C 533 GLU C 534 0 0.24 CISPEP 4 TYR D 68 PRO D 69 0 9.57 CRYST1 38.465 134.038 62.012 90.00 94.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025998 0.000000 0.002019 0.00000 SCALE2 0.000000 0.007461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016174 0.00000