data_3OPX # _entry.id 3OPX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3OPX pdb_00003opx 10.2210/pdb3opx/pdb RCSB RCSB061425 ? ? WWPDB D_1000061425 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3OPX _pdbx_database_status.recvd_initial_deposition_date 2010-09-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teng, M.K.' 1 'Niu, L.W.' 2 'Shi, N.' 3 # _citation.id primary _citation.title ;Crystal structure of pyrimidine 5 -nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5'-monophosphate ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shi, N.' 1 ? primary 'Teng, M.K.' 2 ? primary 'Niu, L.W.' 3 ? # _cell.entry_id 3OPX _cell.length_a 41.198 _cell.length_b 78.037 _cell.length_c 82.789 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3OPX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein SSM1' 30190.705 1 ? D36A 'UNP residues 26-280' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 1 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SDT1 nucleotidase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AHLESLTHPGSKVTFPIDQDISATPQNPNLKVFFFAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYK EYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF DGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIV ISDILELPHVVSDLFLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AHLESLTHPGSKVTFPIDQDISATPQNPNLKVFFFAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYK EYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF DGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIV ISDILELPHVVSDLFLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 HIS n 1 3 LEU n 1 4 GLU n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 HIS n 1 9 PRO n 1 10 GLY n 1 11 SER n 1 12 LYS n 1 13 VAL n 1 14 THR n 1 15 PHE n 1 16 PRO n 1 17 ILE n 1 18 ASP n 1 19 GLN n 1 20 ASP n 1 21 ILE n 1 22 SER n 1 23 ALA n 1 24 THR n 1 25 PRO n 1 26 GLN n 1 27 ASN n 1 28 PRO n 1 29 ASN n 1 30 LEU n 1 31 LYS n 1 32 VAL n 1 33 PHE n 1 34 PHE n 1 35 PHE n 1 36 ALA n 1 37 ILE n 1 38 ASP n 1 39 ASN n 1 40 CYS n 1 41 LEU n 1 42 TYR n 1 43 LYS n 1 44 SER n 1 45 SER n 1 46 THR n 1 47 ARG n 1 48 ILE n 1 49 HIS n 1 50 ASP n 1 51 LEU n 1 52 MET n 1 53 GLN n 1 54 GLN n 1 55 SER n 1 56 ILE n 1 57 LEU n 1 58 ARG n 1 59 PHE n 1 60 PHE n 1 61 GLN n 1 62 THR n 1 63 HIS n 1 64 LEU n 1 65 LYS n 1 66 LEU n 1 67 SER n 1 68 PRO n 1 69 GLU n 1 70 ASP n 1 71 ALA n 1 72 HIS n 1 73 VAL n 1 74 LEU n 1 75 ASN n 1 76 ASN n 1 77 SER n 1 78 TYR n 1 79 TYR n 1 80 LYS n 1 81 GLU n 1 82 TYR n 1 83 GLY n 1 84 LEU n 1 85 ALA n 1 86 ILE n 1 87 ARG n 1 88 GLY n 1 89 LEU n 1 90 VAL n 1 91 MET n 1 92 PHE n 1 93 HIS n 1 94 LYS n 1 95 VAL n 1 96 ASN n 1 97 ALA n 1 98 LEU n 1 99 GLU n 1 100 TYR n 1 101 ASN n 1 102 ARG n 1 103 LEU n 1 104 VAL n 1 105 ASP n 1 106 ASP n 1 107 SER n 1 108 LEU n 1 109 PRO n 1 110 LEU n 1 111 GLN n 1 112 ASP n 1 113 ILE n 1 114 LEU n 1 115 LYS n 1 116 PRO n 1 117 ASP n 1 118 ILE n 1 119 PRO n 1 120 LEU n 1 121 ARG n 1 122 ASN n 1 123 MET n 1 124 LEU n 1 125 LEU n 1 126 ARG n 1 127 LEU n 1 128 ARG n 1 129 GLN n 1 130 SER n 1 131 GLY n 1 132 LYS n 1 133 ILE n 1 134 ASP n 1 135 LYS n 1 136 LEU n 1 137 TRP n 1 138 LEU n 1 139 PHE n 1 140 THR n 1 141 ASN n 1 142 ALA n 1 143 TYR n 1 144 LYS n 1 145 ASN n 1 146 HIS n 1 147 ALA n 1 148 ILE n 1 149 ARG n 1 150 CYS n 1 151 LEU n 1 152 ARG n 1 153 LEU n 1 154 LEU n 1 155 GLY n 1 156 ILE n 1 157 ALA n 1 158 ASP n 1 159 LEU n 1 160 PHE n 1 161 ASP n 1 162 GLY n 1 163 LEU n 1 164 THR n 1 165 TYR n 1 166 CYS n 1 167 ASP n 1 168 TYR n 1 169 SER n 1 170 ARG n 1 171 THR n 1 172 ASP n 1 173 THR n 1 174 LEU n 1 175 VAL n 1 176 CYS n 1 177 LYS n 1 178 PRO n 1 179 HIS n 1 180 VAL n 1 181 LYS n 1 182 ALA n 1 183 PHE n 1 184 GLU n 1 185 LYS n 1 186 ALA n 1 187 MET n 1 188 LYS n 1 189 GLU n 1 190 SER n 1 191 GLY n 1 192 LEU n 1 193 ALA n 1 194 ARG n 1 195 TYR n 1 196 GLU n 1 197 ASN n 1 198 ALA n 1 199 TYR n 1 200 PHE n 1 201 ILE n 1 202 ASP n 1 203 ASP n 1 204 SER n 1 205 GLY n 1 206 LYS n 1 207 ASN n 1 208 ILE n 1 209 GLU n 1 210 THR n 1 211 GLY n 1 212 ILE n 1 213 LYS n 1 214 LEU n 1 215 GLY n 1 216 MET n 1 217 LYS n 1 218 THR n 1 219 CYS n 1 220 ILE n 1 221 HIS n 1 222 LEU n 1 223 VAL n 1 224 GLU n 1 225 ASN n 1 226 GLU n 1 227 VAL n 1 228 ASN n 1 229 GLU n 1 230 ILE n 1 231 LEU n 1 232 GLY n 1 233 GLN n 1 234 THR n 1 235 PRO n 1 236 GLU n 1 237 GLY n 1 238 ALA n 1 239 ILE n 1 240 VAL n 1 241 ILE n 1 242 SER n 1 243 ASP n 1 244 ILE n 1 245 LEU n 1 246 GLU n 1 247 LEU n 1 248 PRO n 1 249 HIS n 1 250 VAL n 1 251 VAL n 1 252 SER n 1 253 ASP n 1 254 LEU n 1 255 PHE n 1 256 LEU n 1 257 GLU n 1 258 HIS n 1 259 HIS n 1 260 HIS n 1 261 HIS n 1 262 HIS n 1 263 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SSM1, SDT1, YGL224C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SSM1_YEAST _struct_ref.pdbx_db_accession P53078 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AHLESLTHPGSKVTFPIDQDISATPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYK EYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF DGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIV ISDILELPHVVSDLF ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3OPX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 255 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P53078 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 255 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3OPX ALA A 36 ? UNP P53078 ASP 61 'engineered mutation' 36 1 1 3OPX LEU A 256 ? UNP P53078 ? ? 'expression tag' 256 2 1 3OPX GLU A 257 ? UNP P53078 ? ? 'expression tag' 257 3 1 3OPX HIS A 258 ? UNP P53078 ? ? 'expression tag' 258 4 1 3OPX HIS A 259 ? UNP P53078 ? ? 'expression tag' 259 5 1 3OPX HIS A 260 ? UNP P53078 ? ? 'expression tag' 260 6 1 3OPX HIS A 261 ? UNP P53078 ? ? 'expression tag' 261 7 1 3OPX HIS A 262 ? UNP P53078 ? ? 'expression tag' 262 8 1 3OPX HIS A 263 ? UNP P53078 ? ? 'expression tag' 263 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U5P non-polymer . "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3OPX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 287.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '30% PEG4000, 0.1M Tris-HCl buffer, pH 8.5, 0.2M sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 287.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2010-03-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9194 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9194 # _reflns.entry_id 3OPX _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 35.0 _reflns.d_resolution_high 1.70 _reflns.number_obs 30137 _reflns.number_all 30175 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.347 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1471 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3OPX _refine.ls_number_reflns_obs 29463 _refine.ls_number_reflns_all 30113 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.14 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.201 _refine.ls_d_res_high 1.700 _refine.ls_percent_reflns_obs 97.84 _refine.ls_R_factor_obs 0.2141 _refine.ls_R_factor_all 0.2187 _refine.ls_R_factor_R_work 0.2121 _refine.ls_R_factor_R_free 0.2509 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 1493 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.5032 _refine.aniso_B[2][2] -3.8577 _refine.aniso_B[3][3] 2.3545 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.366 _refine.solvent_model_param_bsol 41.192 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3ONN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1967 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 2149 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 29.201 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 2052 'X-RAY DIFFRACTION' ? f_angle_d 1.092 ? ? 2783 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.765 ? ? 787 'X-RAY DIFFRACTION' ? f_chiral_restr 0.079 ? ? 321 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 347 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 10 1.6997 1.7605 2612 0.2433 93.00 0.2810 . . 120 . . . . 'X-RAY DIFFRACTION' 10 1.7605 1.8309 2665 0.2371 95.00 0.2862 . . 142 . . . . 'X-RAY DIFFRACTION' 10 1.8309 1.9143 2707 0.2408 96.00 0.2684 . . 151 . . . . 'X-RAY DIFFRACTION' 10 1.9143 2.0152 2766 0.2383 98.00 0.3356 . . 157 . . . . 'X-RAY DIFFRACTION' 10 2.0152 2.1414 2790 0.2242 99.00 0.2635 . . 151 . . . . 'X-RAY DIFFRACTION' 10 2.1414 2.3067 2833 0.2151 99.00 0.2495 . . 147 . . . . 'X-RAY DIFFRACTION' 10 2.3067 2.5387 2836 0.2189 100.00 0.2575 . . 152 . . . . 'X-RAY DIFFRACTION' 10 2.5387 2.9057 2849 0.2259 99.00 0.2830 . . 154 . . . . 'X-RAY DIFFRACTION' 10 2.9057 3.6598 2894 0.1991 100.00 0.2191 . . 164 . . . . 'X-RAY DIFFRACTION' 10 3.6598 29.2049 3018 0.1865 99.00 0.2190 . . 155 . . . . # _struct.entry_id 3OPX _struct.title ;Crystal structure of pyrimidine 5 -nucleotidase SDT1 from Saccharomyces cerevisiae complexed with uridine 5'-monophosphate ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3OPX _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Rossmann fold, nucleotidase, U5P Binding, magnesium Binding, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 43 ? THR A 46 ? LYS A 43 THR A 46 5 ? 4 HELX_P HELX_P2 2 ARG A 47 ? LYS A 65 ? ARG A 47 LYS A 65 1 ? 19 HELX_P HELX_P3 3 SER A 67 ? GLY A 83 ? SER A 67 GLY A 83 1 ? 17 HELX_P HELX_P4 4 LEU A 84 ? LYS A 94 ? LEU A 84 LYS A 94 1 ? 11 HELX_P HELX_P5 5 ASN A 96 ? VAL A 104 ? ASN A 96 VAL A 104 1 ? 9 HELX_P HELX_P6 6 ASP A 105 ? LEU A 108 ? ASP A 105 LEU A 108 5 ? 4 HELX_P HELX_P7 7 PRO A 109 ? ILE A 113 ? PRO A 109 ILE A 113 5 ? 5 HELX_P HELX_P8 8 ASP A 117 ? SER A 130 ? ASP A 117 SER A 130 1 ? 14 HELX_P HELX_P9 9 TYR A 143 ? GLY A 155 ? TYR A 143 GLY A 155 1 ? 13 HELX_P HELX_P10 10 HIS A 179 ? GLY A 191 ? HIS A 179 GLY A 191 1 ? 13 HELX_P HELX_P11 11 ARG A 194 ? GLU A 196 ? ARG A 194 GLU A 196 5 ? 3 HELX_P HELX_P12 12 SER A 204 ? LEU A 214 ? SER A 204 LEU A 214 1 ? 11 HELX_P HELX_P13 13 ASP A 243 ? LEU A 245 ? ASP A 243 LEU A 245 5 ? 3 HELX_P HELX_P14 14 GLU A 246 ? VAL A 251 ? GLU A 246 VAL A 251 1 ? 6 HELX_P HELX_P15 15 SER A 252 ? LEU A 256 ? SER A 252 LEU A 256 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 38 O ? ? ? 1_555 B MG . MG ? ? A ASP 38 A MG 264 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc2 metalc ? ? A ASP 203 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 203 A MG 264 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C U5P . O2P A ? A MG 264 A U5P 265 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C U5P . O2P B ? A MG 264 A U5P 265 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 264 A HOH 294 1_555 ? ? ? ? ? ? ? 2.601 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 264 A HOH 304 1_555 ? ? ? ? ? ? ? 2.458 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 177 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 177 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 178 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 178 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.24 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 162 ? THR A 164 ? GLY A 162 THR A 164 A 2 LYS A 135 ? PHE A 139 ? LYS A 135 PHE A 139 A 3 VAL A 32 ? PHE A 35 ? VAL A 32 PHE A 35 A 4 ALA A 198 ? ASP A 202 ? ALA A 198 ASP A 202 A 5 THR A 218 ? LEU A 222 ? THR A 218 LEU A 222 A 6 ILE A 239 ? ILE A 241 ? ILE A 239 ILE A 241 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 164 ? O THR A 164 N LEU A 138 ? N LEU A 138 A 2 3 O PHE A 139 ? O PHE A 139 N PHE A 35 ? N PHE A 35 A 3 4 N PHE A 34 ? N PHE A 34 O TYR A 199 ? O TYR A 199 A 4 5 N PHE A 200 ? N PHE A 200 O ILE A 220 ? O ILE A 220 A 5 6 N HIS A 221 ? N HIS A 221 O ILE A 239 ? O ILE A 239 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 264 ? 5 'BINDING SITE FOR RESIDUE MG A 264' AC2 Software A U5P 265 ? 16 'BINDING SITE FOR RESIDUE U5P A 265' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 38 ? ASP A 38 . ? 1_555 ? 2 AC1 5 ASP A 203 ? ASP A 203 . ? 1_555 ? 3 AC1 5 U5P C . ? U5P A 265 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 294 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 304 . ? 1_555 ? 6 AC2 16 ILE A 37 ? ILE A 37 . ? 1_555 ? 7 AC2 16 ASP A 38 ? ASP A 38 . ? 1_555 ? 8 AC2 16 MET A 52 ? MET A 52 . ? 1_555 ? 9 AC2 16 TYR A 79 ? TYR A 79 . ? 1_555 ? 10 AC2 16 LEU A 84 ? LEU A 84 . ? 1_555 ? 11 AC2 16 ASP A 105 ? ASP A 105 . ? 1_555 ? 12 AC2 16 THR A 140 ? THR A 140 . ? 1_555 ? 13 AC2 16 ASN A 141 ? ASN A 141 . ? 1_555 ? 14 AC2 16 ALA A 142 ? ALA A 142 . ? 1_555 ? 15 AC2 16 TYR A 168 ? TYR A 168 . ? 1_555 ? 16 AC2 16 LYS A 177 ? LYS A 177 . ? 1_555 ? 17 AC2 16 MG B . ? MG A 264 . ? 1_555 ? 18 AC2 16 HOH D . ? HOH A 278 . ? 1_555 ? 19 AC2 16 HOH D . ? HOH A 279 . ? 1_555 ? 20 AC2 16 HOH D . ? HOH A 294 . ? 1_555 ? 21 AC2 16 HOH D . ? HOH A 422 . ? 1_555 ? # _database_PDB_matrix.entry_id 3OPX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3OPX _atom_sites.fract_transf_matrix[1][1] 0.024273 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012814 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012079 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLN 19 19 ? ? ? A . n A 1 20 ASP 20 20 ? ? ? A . n A 1 21 ILE 21 21 ? ? ? A . n A 1 22 SER 22 22 ? ? ? A . n A 1 23 ALA 23 23 ? ? ? A . n A 1 24 THR 24 24 24 THR ALA A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 CYS 150 150 150 CYS CYS A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 CYS 166 166 166 CYS CYS A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 ARG 170 170 170 ARG ARG A . n A 1 171 THR 171 171 171 THR THR A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 CYS 176 176 176 CYS CYS A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 HIS 179 179 179 HIS HIS A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 PHE 183 183 183 PHE PHE A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 MET 187 187 187 MET MET A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 SER 190 190 190 SER SER A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 PHE 200 200 200 PHE PHE A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 ASN 207 207 207 ASN ASN A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 THR 218 218 218 THR THR A . n A 1 219 CYS 219 219 219 CYS CYS A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 HIS 221 221 221 HIS HIS A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 VAL 223 223 223 VAL VAL A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 ASN 225 225 225 ASN ASN A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 GLU 229 229 ? ? ? A . n A 1 230 ILE 230 230 ? ? ? A . n A 1 231 LEU 231 231 ? ? ? A . n A 1 232 GLY 232 232 ? ? ? A . n A 1 233 GLN 233 233 233 GLN GLN A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 PRO 235 235 235 PRO PRO A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 ALA 238 238 238 ALA ALA A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 HIS 249 249 249 HIS HIS A . n A 1 250 VAL 250 250 250 VAL VAL A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 SER 252 252 252 SER SER A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 PHE 255 255 255 PHE PHE A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 GLU 257 257 257 GLU GLU A . n A 1 258 HIS 258 258 ? ? ? A . n A 1 259 HIS 259 259 ? ? ? A . n A 1 260 HIS 260 260 ? ? ? A . n A 1 261 HIS 261 261 ? ? ? A . n A 1 262 HIS 262 262 ? ? ? A . n A 1 263 HIS 263 263 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 264 1 MG MG A . C 3 U5P 1 265 1 U5P U5P A . D 4 HOH 1 266 1 HOH HOH A . D 4 HOH 2 267 2 HOH HOH A . D 4 HOH 3 268 3 HOH HOH A . D 4 HOH 4 269 4 HOH HOH A . D 4 HOH 5 270 5 HOH HOH A . D 4 HOH 6 271 6 HOH HOH A . D 4 HOH 7 272 7 HOH HOH A . D 4 HOH 8 273 8 HOH HOH A . D 4 HOH 9 274 9 HOH HOH A . D 4 HOH 10 275 10 HOH HOH A . D 4 HOH 11 276 11 HOH HOH A . D 4 HOH 12 277 12 HOH HOH A . D 4 HOH 13 278 13 HOH HOH A . D 4 HOH 14 279 14 HOH HOH A . D 4 HOH 15 280 15 HOH HOH A . D 4 HOH 16 281 16 HOH HOH A . D 4 HOH 17 282 17 HOH HOH A . D 4 HOH 18 283 18 HOH HOH A . D 4 HOH 19 284 19 HOH HOH A . D 4 HOH 20 285 20 HOH HOH A . D 4 HOH 21 286 21 HOH HOH A . D 4 HOH 22 287 22 HOH HOH A . D 4 HOH 23 288 23 HOH HOH A . D 4 HOH 24 289 24 HOH HOH A . D 4 HOH 25 290 25 HOH HOH A . D 4 HOH 26 291 26 HOH HOH A . D 4 HOH 27 292 27 HOH HOH A . D 4 HOH 28 293 28 HOH HOH A . D 4 HOH 29 294 29 HOH HOH A . D 4 HOH 30 295 30 HOH HOH A . D 4 HOH 31 296 31 HOH HOH A . D 4 HOH 32 297 32 HOH HOH A . D 4 HOH 33 298 33 HOH HOH A . D 4 HOH 34 299 34 HOH HOH A . D 4 HOH 35 300 35 HOH HOH A . D 4 HOH 36 301 36 HOH HOH A . D 4 HOH 37 302 37 HOH HOH A . D 4 HOH 38 303 38 HOH HOH A . D 4 HOH 39 304 39 HOH HOH A . D 4 HOH 40 305 40 HOH HOH A . D 4 HOH 41 306 41 HOH HOH A . D 4 HOH 42 307 42 HOH HOH A . D 4 HOH 43 308 43 HOH HOH A . D 4 HOH 44 309 44 HOH HOH A . D 4 HOH 45 310 45 HOH HOH A . D 4 HOH 46 311 46 HOH HOH A . D 4 HOH 47 312 47 HOH HOH A . D 4 HOH 48 313 48 HOH HOH A . D 4 HOH 49 314 49 HOH HOH A . D 4 HOH 50 315 50 HOH HOH A . D 4 HOH 51 316 51 HOH HOH A . D 4 HOH 52 317 52 HOH HOH A . D 4 HOH 53 318 53 HOH HOH A . D 4 HOH 54 319 54 HOH HOH A . D 4 HOH 55 320 55 HOH HOH A . D 4 HOH 56 321 56 HOH HOH A . D 4 HOH 57 322 57 HOH HOH A . D 4 HOH 58 323 58 HOH HOH A . D 4 HOH 59 324 59 HOH HOH A . D 4 HOH 60 325 60 HOH HOH A . D 4 HOH 61 326 61 HOH HOH A . D 4 HOH 62 327 62 HOH HOH A . D 4 HOH 63 328 63 HOH HOH A . D 4 HOH 64 329 64 HOH HOH A . D 4 HOH 65 330 65 HOH HOH A . D 4 HOH 66 331 66 HOH HOH A . D 4 HOH 67 332 67 HOH HOH A . D 4 HOH 68 333 68 HOH HOH A . D 4 HOH 69 334 69 HOH HOH A . D 4 HOH 70 335 70 HOH HOH A . D 4 HOH 71 336 71 HOH HOH A . D 4 HOH 72 337 72 HOH HOH A . D 4 HOH 73 338 73 HOH HOH A . D 4 HOH 74 339 74 HOH HOH A . D 4 HOH 75 340 75 HOH HOH A . D 4 HOH 76 341 76 HOH HOH A . D 4 HOH 77 342 77 HOH HOH A . D 4 HOH 78 343 78 HOH HOH A . D 4 HOH 79 344 79 HOH HOH A . D 4 HOH 80 345 80 HOH HOH A . D 4 HOH 81 346 81 HOH HOH A . D 4 HOH 82 347 82 HOH HOH A . D 4 HOH 83 348 83 HOH HOH A . D 4 HOH 84 349 84 HOH HOH A . D 4 HOH 85 350 85 HOH HOH A . D 4 HOH 86 351 86 HOH HOH A . D 4 HOH 87 352 87 HOH HOH A . D 4 HOH 88 353 88 HOH HOH A . D 4 HOH 89 354 89 HOH HOH A . D 4 HOH 90 355 90 HOH HOH A . D 4 HOH 91 356 91 HOH HOH A . D 4 HOH 92 357 92 HOH HOH A . D 4 HOH 93 358 93 HOH HOH A . D 4 HOH 94 359 94 HOH HOH A . D 4 HOH 95 360 95 HOH HOH A . D 4 HOH 96 361 96 HOH HOH A . D 4 HOH 97 362 97 HOH HOH A . D 4 HOH 98 363 98 HOH HOH A . D 4 HOH 99 364 99 HOH HOH A . D 4 HOH 100 365 100 HOH HOH A . D 4 HOH 101 366 101 HOH HOH A . D 4 HOH 102 367 102 HOH HOH A . D 4 HOH 103 368 103 HOH HOH A . D 4 HOH 104 369 104 HOH HOH A . D 4 HOH 105 370 105 HOH HOH A . D 4 HOH 106 371 106 HOH HOH A . D 4 HOH 107 372 107 HOH HOH A . D 4 HOH 108 373 108 HOH HOH A . D 4 HOH 109 374 109 HOH HOH A . D 4 HOH 110 375 110 HOH HOH A . D 4 HOH 111 376 111 HOH HOH A . D 4 HOH 112 377 112 HOH HOH A . D 4 HOH 113 378 113 HOH HOH A . D 4 HOH 114 379 114 HOH HOH A . D 4 HOH 115 380 115 HOH HOH A . D 4 HOH 116 381 116 HOH HOH A . D 4 HOH 117 382 117 HOH HOH A . D 4 HOH 118 383 118 HOH HOH A . D 4 HOH 119 384 119 HOH HOH A . D 4 HOH 120 385 120 HOH HOH A . D 4 HOH 121 386 121 HOH HOH A . D 4 HOH 122 387 122 HOH HOH A . D 4 HOH 123 388 123 HOH HOH A . D 4 HOH 124 389 124 HOH HOH A . D 4 HOH 125 390 125 HOH HOH A . D 4 HOH 126 391 126 HOH HOH A . D 4 HOH 127 392 127 HOH HOH A . D 4 HOH 128 393 128 HOH HOH A . D 4 HOH 129 394 129 HOH HOH A . D 4 HOH 130 395 130 HOH HOH A . D 4 HOH 131 396 131 HOH HOH A . D 4 HOH 132 397 132 HOH HOH A . D 4 HOH 133 398 134 HOH HOH A . D 4 HOH 134 399 135 HOH HOH A . D 4 HOH 135 400 136 HOH HOH A . D 4 HOH 136 401 137 HOH HOH A . D 4 HOH 137 402 138 HOH HOH A . D 4 HOH 138 403 139 HOH HOH A . D 4 HOH 139 404 140 HOH HOH A . D 4 HOH 140 405 141 HOH HOH A . D 4 HOH 141 406 142 HOH HOH A . D 4 HOH 142 407 143 HOH HOH A . D 4 HOH 143 408 144 HOH HOH A . D 4 HOH 144 409 145 HOH HOH A . D 4 HOH 145 410 146 HOH HOH A . D 4 HOH 146 411 147 HOH HOH A . D 4 HOH 147 412 148 HOH HOH A . D 4 HOH 148 413 149 HOH HOH A . D 4 HOH 149 414 150 HOH HOH A . D 4 HOH 150 415 151 HOH HOH A . D 4 HOH 151 416 152 HOH HOH A . D 4 HOH 152 417 153 HOH HOH A . D 4 HOH 153 418 154 HOH HOH A . D 4 HOH 154 419 155 HOH HOH A . D 4 HOH 155 420 156 HOH HOH A . D 4 HOH 156 421 157 HOH HOH A . D 4 HOH 157 422 158 HOH HOH A . D 4 HOH 158 423 159 HOH HOH A . D 4 HOH 159 424 160 HOH HOH A . D 4 HOH 160 425 161 HOH HOH A . D 4 HOH 161 426 162 HOH HOH A . D 4 HOH 162 427 163 HOH HOH A . D 4 HOH 163 428 164 HOH HOH A . D 4 HOH 164 429 165 HOH HOH A . D 4 HOH 165 430 167 HOH HOH A . D 4 HOH 166 431 168 HOH HOH A . D 4 HOH 167 432 169 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 38 ? A ASP 38 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 OD1 ? A ASP 203 ? A ASP 203 ? 1_555 88.7 ? 2 O ? A ASP 38 ? A ASP 38 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O2P A C U5P . ? A U5P 265 ? 1_555 98.6 ? 3 OD1 ? A ASP 203 ? A ASP 203 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O2P A C U5P . ? A U5P 265 ? 1_555 140.1 ? 4 O ? A ASP 38 ? A ASP 38 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O2P B C U5P . ? A U5P 265 ? 1_555 93.3 ? 5 OD1 ? A ASP 203 ? A ASP 203 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O2P B C U5P . ? A U5P 265 ? 1_555 151.6 ? 6 O2P A C U5P . ? A U5P 265 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O2P B C U5P . ? A U5P 265 ? 1_555 12.2 ? 7 O ? A ASP 38 ? A ASP 38 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 294 ? 1_555 158.3 ? 8 OD1 ? A ASP 203 ? A ASP 203 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 294 ? 1_555 82.5 ? 9 O2P A C U5P . ? A U5P 265 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 294 ? 1_555 76.4 ? 10 O2P B C U5P . ? A U5P 265 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 294 ? 1_555 85.3 ? 11 O ? A ASP 38 ? A ASP 38 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 92.2 ? 12 OD1 ? A ASP 203 ? A ASP 203 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 110.6 ? 13 O2P A C U5P . ? A U5P 265 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 108.3 ? 14 O2P B C U5P . ? A U5P 265 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 97.6 ? 15 O ? D HOH . ? A HOH 294 ? 1_555 MG ? B MG . ? A MG 264 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 109.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6_289)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 29 ? ? -68.31 8.50 2 1 ILE A 37 ? ? -106.87 -62.06 3 1 CYS A 40 ? ? -121.84 -61.28 4 1 CYS A 40 ? ? -122.66 -59.17 5 1 VAL A 104 ? ? -103.85 -101.27 6 1 ASN A 225 ? ? -123.39 -84.99 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id B _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id U5P _pdbx_validate_chiral.auth_seq_id 265 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 17 ? CG2 ? A ILE 17 CG2 2 1 Y 1 A THR 24 ? OG1 ? A THR 24 OG1 3 1 Y 1 A THR 24 ? CG2 ? A THR 24 CG2 4 1 Y 1 A ASN 27 ? CG ? A ASN 27 CG 5 1 Y 1 A ASN 27 ? OD1 ? A ASN 27 OD1 6 1 Y 1 A ASN 27 ? ND2 ? A ASN 27 ND2 7 1 Y 1 A LYS 43 ? NZ ? A LYS 43 NZ 8 1 Y 1 A ARG 47 ? CZ ? A ARG 47 CZ 9 1 Y 1 A ARG 47 ? NH1 ? A ARG 47 NH1 10 1 Y 1 A ARG 47 ? NH2 ? A ARG 47 NH2 11 1 Y 1 A ARG 58 ? CD ? A ARG 58 CD 12 1 Y 1 A ARG 58 ? NE ? A ARG 58 NE 13 1 Y 1 A ARG 58 ? CZ ? A ARG 58 CZ 14 1 Y 1 A ARG 58 ? NH1 ? A ARG 58 NH1 15 1 Y 1 A ARG 58 ? NH2 ? A ARG 58 NH2 16 1 Y 1 A LYS 80 ? NZ ? A LYS 80 NZ 17 1 Y 1 A THR 171 ? CG2 ? A THR 171 CG2 18 1 Y 1 A LYS 181 ? NZ ? A LYS 181 NZ 19 1 Y 0 A ARG 194 ? NE ? A ARG 194 NE 20 1 Y 1 A GLU 196 ? CD ? A GLU 196 CD 21 1 Y 1 A GLU 196 ? OE1 ? A GLU 196 OE1 22 1 Y 1 A GLU 196 ? OE2 ? A GLU 196 OE2 23 1 Y 1 A GLU 226 ? CD ? A GLU 226 CD 24 1 Y 1 A GLU 226 ? OE1 ? A GLU 226 OE1 25 1 Y 1 A GLU 226 ? OE2 ? A GLU 226 OE2 26 1 Y 1 A ASN 228 ? CG ? A ASN 228 CG 27 1 Y 1 A ASN 228 ? OD1 ? A ASN 228 OD1 28 1 Y 1 A ASN 228 ? ND2 ? A ASN 228 ND2 29 1 N 1 A U5P 265 ? C2 ? C U5P 1 C2 30 1 N 1 A U5P 265 ? N3 ? C U5P 1 N3 31 1 N 1 A U5P 265 ? C4 ? C U5P 1 C4 32 1 N 1 A U5P 265 ? C5 ? C U5P 1 C5 33 1 N 1 A U5P 265 ? C6 ? C U5P 1 C6 34 1 N 1 A U5P 265 ? O2 ? C U5P 1 O2 35 1 N 1 A U5P 265 ? O4 ? C U5P 1 O4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A GLN 19 ? A GLN 19 3 1 Y 1 A ASP 20 ? A ASP 20 4 1 Y 1 A ILE 21 ? A ILE 21 5 1 Y 1 A SER 22 ? A SER 22 6 1 Y 1 A ALA 23 ? A ALA 23 7 1 Y 1 A GLU 229 ? A GLU 229 8 1 Y 1 A ILE 230 ? A ILE 230 9 1 Y 1 A LEU 231 ? A LEU 231 10 1 Y 1 A GLY 232 ? A GLY 232 11 1 Y 1 A HIS 258 ? A HIS 258 12 1 Y 1 A HIS 259 ? A HIS 259 13 1 Y 1 A HIS 260 ? A HIS 260 14 1 Y 1 A HIS 261 ? A HIS 261 15 1 Y 1 A HIS 262 ? A HIS 262 16 1 Y 1 A HIS 263 ? A HIS 263 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 U5P N1 N N N 373 U5P C2 C N N 374 U5P N3 N N N 375 U5P C4 C N N 376 U5P C5 C N N 377 U5P C6 C N N 378 U5P O2 O N N 379 U5P O4 O N N 380 U5P "C1'" C N R 381 U5P "C2'" C N R 382 U5P "O2'" O N N 383 U5P "C3'" C N S 384 U5P "C4'" C N R 385 U5P "O3'" O N N 386 U5P "O4'" O N N 387 U5P "C5'" C N N 388 U5P "O5'" O N N 389 U5P P P N N 390 U5P O1P O N N 391 U5P O2P O N N 392 U5P O3P O N N 393 U5P HN3 H N N 394 U5P H5 H N N 395 U5P H6 H N N 396 U5P "H1'" H N N 397 U5P "H2'" H N N 398 U5P "HO2'" H N N 399 U5P "H3'" H N N 400 U5P "H4'" H N N 401 U5P "HO3'" H N N 402 U5P "H5'1" H N N 403 U5P "H5'2" H N N 404 U5P HOP2 H N N 405 U5P HOP3 H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 U5P N1 C2 sing N N 358 U5P N1 C6 sing N N 359 U5P N1 "C1'" sing N N 360 U5P C2 N3 sing N N 361 U5P C2 O2 doub N N 362 U5P N3 C4 sing N N 363 U5P N3 HN3 sing N N 364 U5P C4 C5 sing N N 365 U5P C4 O4 doub N N 366 U5P C5 C6 doub N N 367 U5P C5 H5 sing N N 368 U5P C6 H6 sing N N 369 U5P "C1'" "C2'" sing N N 370 U5P "C1'" "O4'" sing N N 371 U5P "C1'" "H1'" sing N N 372 U5P "C2'" "O2'" sing N N 373 U5P "C2'" "C3'" sing N N 374 U5P "C2'" "H2'" sing N N 375 U5P "O2'" "HO2'" sing N N 376 U5P "C3'" "C4'" sing N N 377 U5P "C3'" "O3'" sing N N 378 U5P "C3'" "H3'" sing N N 379 U5P "C4'" "O4'" sing N N 380 U5P "C4'" "C5'" sing N N 381 U5P "C4'" "H4'" sing N N 382 U5P "O3'" "HO3'" sing N N 383 U5P "C5'" "O5'" sing N N 384 U5P "C5'" "H5'1" sing N N 385 U5P "C5'" "H5'2" sing N N 386 U5P "O5'" P sing N N 387 U5P P O1P doub N N 388 U5P P O2P sing N N 389 U5P P O3P sing N N 390 U5P O2P HOP2 sing N N 391 U5P O3P HOP3 sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "URIDINE-5'-MONOPHOSPHATE" U5P 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ONN _pdbx_initial_refinement_model.details 'PDB ENTRY 3ONN' #