HEADER PROTEIN BINDING 04-SEP-10 3OQV TITLE ALBC, A CYCLODIPEPTIDE SYNTHASE FROM STREPTOMYCES NOURSEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALBC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NOURSEI; SOURCE 3 ORGANISM_TAXID: 1971; SOURCE 4 GENE: ALBC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, CYCLODIPEPTIDE SYNTHASE, AMINOACYL-TRNA, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.SAUGUET,M.H.LEDU,J.B.CHARBONNIER,M.GONDRY REVDAT 5 21-FEB-24 3OQV 1 REMARK SEQADV REVDAT 4 12-NOV-14 3OQV 1 KEYWDS REVDAT 3 24-AUG-11 3OQV 1 JRNL VERSN REVDAT 2 01-JUN-11 3OQV 1 JRNL REVDAT 1 16-FEB-11 3OQV 0 JRNL AUTH L.SAUGUET,M.MOUTIEZ,Y.LI,P.BELIN,J.SEGUIN,M.H.LE DU,R.THAI, JRNL AUTH 2 C.MASSON,M.FONVIELLE,J.L.PERNODET,J.B.CHARBONNIER,M.GONDRY JRNL TITL CYCLODIPEPTIDE SYNTHASES, A FAMILY OF CLASS-I AMINOACYL-TRNA JRNL TITL 2 SYNTHETASE-LIKE ENZYMES INVOLVED IN NON-RIBOSOMAL PEPTIDE JRNL TITL 3 SYNTHESIS. JRNL REF NUCLEIC ACIDS RES. V. 39 4475 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21296757 JRNL DOI 10.1093/NAR/GKR027 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.743 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1668 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2260 ; 0.793 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 8.329 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;27.916 ;22.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;16.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1278 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 1.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 2.682 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 615 ; 4.349 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 586 ; 6.918 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5400 -34.9340 -0.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0480 REMARK 3 T33: 0.0345 T12: 0.0457 REMARK 3 T13: -0.0084 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.6930 L22: 1.2706 REMARK 3 L33: 0.9161 L12: 0.0305 REMARK 3 L13: -0.0967 L23: -0.2245 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.0116 S13: 0.0368 REMARK 3 S21: -0.0623 S22: 0.0266 S23: 0.0191 REMARK 3 S31: 0.0698 S32: 0.0187 S33: 0.0127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.9794, 0.9757 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15963 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.61500 REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M NA/K PHOSPHATE, 100 MM DTT, PH REMARK 280 PH 6, BATCH METHOD UNDER OIL, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.73000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.73000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.58500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.58500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 22.73000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.58500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.58500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 MET A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 GLU A 16 REMARK 465 ILE A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 ARG A 23 REMARK 465 LEU A 24 REMARK 465 ILE A 25 REMARK 465 ARG A 26 REMARK 465 GLN A 27 REMARK 465 THR A 217 REMARK 465 ARG A 240 REMARK 465 SER A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 HIS A 110 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 121 O HOH A 345 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 134 O HOH A 262 6445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 110 59.85 -149.27 REMARK 500 ASP A 188 55.21 -156.82 REMARK 500 ALA A 221 166.22 -47.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 107 GLY A 108 142.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 251 DBREF 3OQV A 2 239 UNP Q8GED7 Q8GED7_9ACTO 2 239 SEQADV 3OQV GLY A 1 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV ARG A 240 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV SER A 241 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 242 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 243 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 244 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 245 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 246 UNP Q8GED7 EXPRESSION TAG SEQADV 3OQV HIS A 247 UNP Q8GED7 EXPRESSION TAG SEQRES 1 A 247 GLY LEU ALA GLY LEU VAL PRO ALA PRO ASP HIS GLY MET SEQRES 2 A 247 ARG GLU GLU ILE LEU GLY ASP ARG SER ARG LEU ILE ARG SEQRES 3 A 247 GLN ARG GLY GLU HIS ALA LEU ILE GLY ILE SER ALA GLY SEQRES 4 A 247 ASN SER TYR PHE SER GLN LYS ASN THR VAL MET LEU LEU SEQRES 5 A 247 GLN TRP ALA GLY GLN ARG PHE GLU ARG THR ASP VAL VAL SEQRES 6 A 247 TYR VAL ASP THR HIS ILE ASP GLU MET LEU ILE ALA ASP SEQRES 7 A 247 GLY ARG SER ALA GLN GLU ALA GLU ARG SER VAL LYS ARG SEQRES 8 A 247 THR LEU LYS ASP LEU ARG ARG ARG LEU ARG ARG SER LEU SEQRES 9 A 247 GLU SER VAL GLY ASP HIS ALA GLU ARG PHE ARG VAL ARG SEQRES 10 A 247 SER LEU SER GLU LEU GLN GLU THR PRO GLU TYR ARG ALA SEQRES 11 A 247 VAL ARG GLU ARG THR ASP ARG ALA PHE GLU GLU ASP ALA SEQRES 12 A 247 GLU PHE ALA THR ALA CYS GLU ASP MET VAL ARG ALA VAL SEQRES 13 A 247 VAL MET ASN ARG PRO GLY ASP GLY VAL GLY ILE SER ALA SEQRES 14 A 247 GLU HIS LEU ARG ALA GLY LEU ASN TYR VAL LEU ALA GLU SEQRES 15 A 247 ALA PRO LEU PHE ALA ASP SER PRO GLY VAL PHE SER VAL SEQRES 16 A 247 PRO SER SER VAL LEU CYS TYR HIS ILE ASP THR PRO ILE SEQRES 17 A 247 THR ALA PHE LEU SER ARG ARG GLU THR GLY PHE ARG ALA SEQRES 18 A 247 ALA GLU GLY GLN ALA TYR VAL VAL VAL ARG PRO GLN GLU SEQRES 19 A 247 LEU ALA ASP ALA ALA ARG SER HIS HIS HIS HIS HIS HIS HET DTD A 248 8 HET PO4 A 249 5 HET PO4 A 250 5 HET PO4 A 251 5 HETNAM DTD DITHIANE DIOL HETNAM PO4 PHOSPHATE ION FORMUL 2 DTD C4 H8 O2 S2 FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *107(H2 O) HELIX 1 1 SER A 44 ARG A 58 1 15 HELIX 2 2 HIS A 70 GLY A 79 1 10 HELIX 3 3 SER A 81 GLY A 108 1 28 HELIX 4 4 HIS A 110 GLU A 112 5 3 HELIX 5 5 LEU A 119 GLN A 123 1 5 HELIX 6 6 THR A 125 ASP A 142 1 18 HELIX 7 7 ASP A 142 ASN A 159 1 18 HELIX 8 8 SER A 168 SER A 194 1 27 HELIX 9 9 THR A 206 SER A 213 1 8 HELIX 10 10 ARG A 231 ALA A 239 1 9 SHEET 1 A 5 PHE A 114 SER A 118 0 SHEET 2 A 5 PHE A 59 VAL A 67 1 N VAL A 64 O ARG A 115 SHEET 3 A 5 GLY A 29 SER A 37 1 N ILE A 36 O VAL A 65 SHEET 4 A 5 SER A 198 TYR A 202 1 O VAL A 199 N LEU A 33 SHEET 5 A 5 GLN A 225 VAL A 229 1 O ALA A 226 N LEU A 200 SITE 1 AC1 7 GLY A 35 VAL A 67 GLU A 182 PO4 A 249 SITE 2 AC1 7 HOH A 273 HOH A 291 HOH A 298 SITE 1 AC2 8 SER A 37 MET A 152 TYR A 178 GLU A 182 SITE 2 AC2 8 DTD A 248 HOH A 252 HOH A 273 HOH A 296 SITE 1 AC3 6 HIS A 70 GLN A 123 ARG A 132 HOH A 265 SITE 2 AC3 6 HOH A 339 HOH A 347 SITE 1 AC4 7 ARG A 87 LYS A 90 ARG A 91 LYS A 94 SITE 2 AC4 7 ARG A 98 HOH A 357 HOH A 358 CRYST1 97.170 97.170 45.460 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021997 0.00000