HEADER TRANSFERASE/DNA 09-SEP-10 3OSP TITLE STRUCTURE OF REV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: REV1 (UNP RESIDUES 305-738; COMPND 5 SYNONYM: REVERSIONLESS PROTEIN 1; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*TP*AP*AP*(3DR)P*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)- COMPND 10 3'; COMPND 11 CHAIN: T; COMPND 12 SYNONYM: TEMPLATE; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3'; COMPND 16 CHAIN: P; COMPND 17 SYNONYM: PRIMER; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: O6339, REV1, YOR346W; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE, DAMAGE BYPASS, DNA, ABASIC SITE, NUCLEUS, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,A.K.AGGARWAL REVDAT 2 01-NOV-23 3OSP 1 REMARK LINK REVDAT 1 13-APR-11 3OSP 0 JRNL AUTH D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL DNA SYNTHESIS ACROSS AN ABASIC LESION BY YEAST REV1 DNA JRNL TITL 2 POLYMERASE. JRNL REF J.MOL.BIOL. V. 406 18 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21167175 JRNL DOI 10.1016/J.JMB.2010.12.016 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2688 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 25 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3419 REMARK 3 NUCLEIC ACID ATOMS : 558 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2AQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 90.01050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 100.11800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 90.01050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 100.11800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 90.01050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.11800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 90.01050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 100.11800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 478 REMARK 465 ILE A 479 REMARK 465 HIS A 480 REMARK 465 ASN A 481 REMARK 465 THR A 482 REMARK 465 ASN A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 382 CB CYS A 382 SG -0.151 REMARK 500 CYS A 403 CB CYS A 403 SG -0.105 REMARK 500 ALA A 708 CA ALA A 708 CB -0.128 REMARK 500 DA T 2 O3' DA T 3 P 0.075 REMARK 500 DT T 6 O3' DT T 6 C3' -0.043 REMARK 500 DA T 7 O3' DA T 7 C3' -0.041 REMARK 500 DG T 11 C5 DG T 11 N7 0.043 REMARK 500 DG T 13 O3' DG T 13 C3' -0.043 REMARK 500 DC P 4 O3' DC P 4 C3' -0.042 REMARK 500 DC P 6 O3' DC P 6 C3' -0.062 REMARK 500 DC P 7 C5' DC P 7 C4' 0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 526 C - N - CA ANGL. DEV. = -22.2 DEGREES REMARK 500 PRO A 526 C - N - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 581 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 LEU A 666 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG A 671 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 711 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 DT T 1 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT T 1 C5 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA T 2 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA T 3 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DA T 3 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA T 3 C3' - O3' - P ANGL. DEV. = 18.9 DEGREES REMARK 500 3DR T 4 O3' - P - O5' ANGL. DEV. = -14.2 DEGREES REMARK 500 3DR T 4 O3' - P - OP2 ANGL. DEV. = -22.3 DEGREES REMARK 500 3DR T 4 O3' - P - OP1 ANGL. DEV. = -27.8 DEGREES REMARK 500 DG T 5 O4' - C1' - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 DG T 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DT T 6 O5' - P - OP1 ANGL. DEV. = -7.8 DEGREES REMARK 500 DT T 6 C5' - C4' - C3' ANGL. DEV. = -15.7 DEGREES REMARK 500 DT T 6 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG T 8 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG T 8 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DG T 8 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DG T 9 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DG T 9 P - O5' - C5' ANGL. DEV. = -10.3 DEGREES REMARK 500 DG T 9 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG T 11 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA T 12 C6 - N1 - C2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA T 12 N1 - C2 - N3 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG T 13 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA T 15 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT T 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA P 1 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DT P 2 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC P 3 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC P 4 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT P 5 N1 - C2 - N3 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT P 5 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC P 6 OP1 - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 DC P 6 N3 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 DC P 7 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC P 7 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC P 8 OP1 - P - OP2 ANGL. DEV. = 16.7 DEGREES REMARK 500 DC P 8 O5' - P - OP2 ANGL. DEV. = -7.7 DEGREES REMARK 500 DT P 10 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA P 11 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 DA P 11 C4' - C3' - C2' ANGL. DEV. = 6.0 DEGREES REMARK 500 DA P 11 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DA P 11 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA P 11 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 306 111.14 41.76 REMARK 500 CYS A 365 64.43 27.80 REMARK 500 LYS A 396 -97.77 -130.74 REMARK 500 ASN A 456 56.39 -115.78 REMARK 500 ILE A 531 -61.67 -92.72 REMARK 500 THR A 532 96.75 39.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 347 THR A 348 -143.49 REMARK 500 ALA A 524 LYS A 525 -147.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 297 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 362 OD2 REMARK 620 2 ASP A 467 OD2 100.1 REMARK 620 3 GLU A 468 OE2 86.8 107.7 REMARK 620 4 DCP A 739 O1A 81.0 106.0 145.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 298 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 362 OD1 REMARK 620 2 ASP A 362 OD2 49.6 REMARK 620 3 PHE A 363 O 66.8 112.6 REMARK 620 4 ASP A 467 OD1 110.8 90.0 93.9 REMARK 620 5 DCP A 739 O2B 149.3 154.5 92.6 92.4 REMARK 620 6 DCP A 739 O1A 119.7 79.6 163.7 97.1 74.9 REMARK 620 7 DCP A 739 O3G 79.6 95.5 92.4 169.3 78.8 75.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 739 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 298 DBREF 3OSP A 305 738 UNP P12689 REV1_YEAST 305 738 DBREF 3OSP T 1 16 PDB 3OSP 3OSP 1 16 DBREF 3OSP P 1 12 PDB 3OSP 3OSP 1 12 SEQRES 1 A 434 LYS ARG ILE VAL ALA CYS ASP ASP PRO ASP PHE LEU THR SEQRES 2 A 434 SER TYR PHE ALA HIS SER ARG LEU HIS HIS LEU SER ALA SEQRES 3 A 434 TRP LYS ALA ASN LEU LYS ASP LYS PHE LEU ASN GLU ASN SEQRES 4 A 434 ILE HIS LYS TYR THR LYS ILE THR ASP LYS ASP THR TYR SEQRES 5 A 434 ILE ILE PHE HIS ILE ASP PHE ASP CYS PHE PHE ALA THR SEQRES 6 A 434 VAL ALA TYR LEU CYS ARG SER SER SER PHE SER ALA CYS SEQRES 7 A 434 ASP PHE LYS ARG ASP PRO ILE VAL VAL CYS HIS GLY THR SEQRES 8 A 434 LYS ASN SER ASP ILE ALA SER CYS ASN TYR VAL ALA ARG SEQRES 9 A 434 SER TYR GLY ILE LYS ASN GLY MET TRP VAL SER GLN ALA SEQRES 10 A 434 GLU LYS MET LEU PRO ASN GLY ILE LYS LEU ILE SER LEU SEQRES 11 A 434 PRO TYR THR PHE GLU GLN PHE GLN LEU LYS SER GLU ALA SEQRES 12 A 434 PHE TYR SER THR LEU LYS ARG LEU ASN ILE PHE ASN LEU SEQRES 13 A 434 ILE LEU PRO ILE SER ILE ASP GLU ALA VAL CYS VAL ARG SEQRES 14 A 434 ILE ILE PRO ASP ASN ILE HIS ASN THR ASN THR LEU ASN SEQRES 15 A 434 ALA ARG LEU CYS GLU GLU ILE ARG GLN GLU ILE PHE GLN SEQRES 16 A 434 GLY THR ASN GLY CYS THR VAL SER ILE GLY CYS SER ASP SEQRES 17 A 434 SER LEU VAL LEU ALA ARG LEU ALA LEU LYS MET ALA LYS SEQRES 18 A 434 PRO ASN GLY TYR ASN ILE THR PHE LYS SER ASN LEU SER SEQRES 19 A 434 GLU GLU PHE TRP SER SER PHE LYS LEU ASP ASP LEU PRO SEQRES 20 A 434 GLY VAL GLY HIS SER THR LEU SER ARG LEU GLU SER THR SEQRES 21 A 434 PHE ASP SER PRO HIS SER LEU ASN ASP LEU ARG LYS ARG SEQRES 22 A 434 TYR THR LEU ASP ALA LEU LYS ALA SER VAL GLY SER LYS SEQRES 23 A 434 LEU GLY MET LYS ILE HIS LEU ALA LEU GLN GLY GLN ASP SEQRES 24 A 434 ASP GLU GLU SER LEU LYS ILE LEU TYR ASP PRO LYS GLU SEQRES 25 A 434 VAL LEU GLN ARG LYS SER LEU SER ILE ASP ILE ASN TRP SEQRES 26 A 434 GLY ILE ARG PHE LYS ASN ILE THR GLN VAL ASP LEU PHE SEQRES 27 A 434 ILE GLU ARG GLY CYS GLN TYR LEU LEU GLU LYS LEU ASN SEQRES 28 A 434 GLU ILE ASN LYS THR THR SER GLN ILE THR LEU LYS LEU SEQRES 29 A 434 MET ARG ARG CYS LYS ASP ALA PRO ILE GLU PRO PRO LYS SEQRES 30 A 434 TYR MET GLY MET GLY ARG CYS ASP SER PHE SER ARG SER SEQRES 31 A 434 SER ARG LEU GLY ILE PRO THR ASN GLU PHE GLY ILE ILE SEQRES 32 A 434 ALA THR GLU MET LYS SER LEU TYR ARG THR LEU GLY CYS SEQRES 33 A 434 PRO PRO MET GLU LEU ARG GLY LEU ALA LEU GLN PHE ASN SEQRES 34 A 434 LYS LEU VAL ASP VAL SEQRES 1 T 16 DT DA DA 3DR DG DT DA DG DG DG DG DA DG SEQRES 2 T 16 DG DA DT SEQRES 1 P 12 DA DT DC DC DT DC DC DC DC DT DA DOC MODRES 3OSP DOC P 12 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET 3DR T 4 11 HET DOC P 12 18 HET DCP A 739 28 HET MG A 297 1 HET MG A 298 1 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 2 3DR C5 H11 O6 P FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *151(H2 O) HELIX 1 1 ASP A 314 SER A 323 1 10 HELIX 2 2 SER A 323 ILE A 344 1 22 HELIX 3 3 CYS A 365 CYS A 374 1 10 HELIX 4 4 SER A 376 SER A 380 5 5 HELIX 5 5 ASN A 404 TYR A 410 1 7 HELIX 6 6 TRP A 417 LYS A 423 1 7 HELIX 7 7 THR A 437 LEU A 455 1 19 HELIX 8 8 THR A 484 THR A 501 1 18 HELIX 9 9 SER A 513 LYS A 525 1 13 HELIX 10 10 PHE A 533 LEU A 537 5 5 HELIX 11 11 SER A 538 SER A 543 1 6 HELIX 12 12 SER A 544 PHE A 545 5 2 HELIX 13 13 LYS A 546 LEU A 550 5 5 HELIX 14 14 GLY A 554 PHE A 565 1 12 HELIX 15 15 SER A 570 TYR A 578 1 9 HELIX 16 16 THR A 579 GLY A 588 1 10 HELIX 17 17 GLY A 588 LEU A 599 1 12 HELIX 18 18 ASP A 604 ASP A 613 1 10 HELIX 19 19 ASP A 613 LEU A 618 1 6 HELIX 20 20 ASN A 635 ILE A 657 1 23 HELIX 21 21 GLU A 703 GLY A 719 1 17 HELIX 22 22 PRO A 721 MET A 723 5 3 SHEET 1 A 5 LEU A 460 SER A 465 0 SHEET 2 A 5 GLU A 468 ILE A 475 -1 O VAL A 472 N LEU A 460 SHEET 3 A 5 THR A 355 PHE A 363 -1 N THR A 355 O ILE A 475 SHEET 4 A 5 VAL A 506 SER A 511 -1 O GLY A 509 N HIS A 360 SHEET 5 A 5 TYR A 529 ASN A 530 1 O ASN A 530 N CYS A 510 SHEET 1 B 3 SER A 402 CYS A 403 0 SHEET 2 B 3 ILE A 389 VAL A 391 -1 N VAL A 391 O SER A 402 SHEET 3 B 3 ILE A 432 LEU A 434 1 O LEU A 434 N VAL A 390 SHEET 1 C 4 LEU A 623 ILE A 627 0 SHEET 2 C 4 LEU A 725 ASP A 737 -1 O PHE A 732 N LEU A 623 SHEET 3 C 4 LYS A 659 ARG A 671 -1 N LYS A 667 O ALA A 729 SHEET 4 C 4 CYS A 688 THR A 701 -1 O ASP A 689 N ARG A 670 LINK O3' DA T 3 P 3DR T 4 1555 1555 1.56 LINK O3' 3DR T 4 P DG T 5 1555 1555 1.59 LINK O3' DA P 11 P DOC P 12 1555 1555 1.61 LINK MG MG A 297 OD2 ASP A 362 1555 1555 2.55 LINK MG MG A 297 OD2 ASP A 467 1555 1555 2.69 LINK MG MG A 297 OE2 GLU A 468 1555 1555 2.48 LINK MG MG A 297 O1A DCP A 739 1555 1555 2.63 LINK MG MG A 298 OD1 ASP A 362 1555 1555 2.19 LINK MG MG A 298 OD2 ASP A 362 1555 1555 2.77 LINK MG MG A 298 O PHE A 363 1555 1555 2.20 LINK MG MG A 298 OD1 ASP A 467 1555 1555 2.46 LINK MG MG A 298 O2B DCP A 739 1555 1555 2.19 LINK MG MG A 298 O1A DCP A 739 1555 1555 2.47 LINK MG MG A 298 O3G DCP A 739 1555 1555 2.48 SITE 1 AC1 22 MG A 297 MG A 298 ARG A 324 LEU A 328 SITE 2 AC1 22 ASP A 362 PHE A 363 ASP A 364 CYS A 365 SITE 3 AC1 22 PHE A 366 PHE A 367 ALA A 401 SER A 402 SITE 4 AC1 22 TYR A 405 ARG A 408 ASN A 414 ASP A 467 SITE 5 AC1 22 LYS A 525 HOH A 748 HOH A 753 HOH A 791 SITE 6 AC1 22 HOH A 850 DOC P 12 SITE 1 AC2 6 MG A 298 ASP A 362 ASP A 467 GLU A 468 SITE 2 AC2 6 DCP A 739 DOC P 12 SITE 1 AC3 5 MG A 297 ASP A 362 PHE A 363 ASP A 467 SITE 2 AC3 5 DCP A 739 CRYST1 180.021 200.236 55.725 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017945 0.00000