HEADER VIRAL PROTEIN 16-SEP-10 3OV9 TITLE STRUCTURE OF THE NUCLEOPROTEIN FROM RIFT VALLEY FEVER VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN, PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: RVFV; SOURCE 4 ORGANISM_TAXID: 11589; SOURCE 5 STRAIN: ZH-548 M12; SOURCE 6 GENE: N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ORTHOGONAL BUNDLE, VIRAL GENOMIC ENCAPSIDATION, VIRAL RNA VIRAL KEYWDS 2 NUCLEOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FERRON,E.I.DANEK,Z.LI,D.LUO,Y.H.WONG,B.COUTARD,V.LANTEZ,R.CHARREL, AUTHOR 2 B.CANARD,T.WALZ,J.LESCAR REVDAT 3 01-NOV-23 3OV9 1 REMARK LINK REVDAT 2 28-AUG-13 3OV9 1 JRNL VERSN REVDAT 1 25-MAY-11 3OV9 0 JRNL AUTH F.FERRON,Z.LI,E.I.DANEK,D.LUO,Y.WONG,B.COUTARD,V.LANTEZ, JRNL AUTH 2 R.CHARREL,B.CANARD,T.WALZ,J.LESCAR JRNL TITL THE HEXAMER STRUCTURE OF RIFT VALLEY FEVER VIRUS JRNL TITL 2 NUCLEOPROTEIN SUGGESTS A MECHANISM FOR ITS ASSEMBLY INTO JRNL TITL 3 RIBONUCLEOPROTEIN COMPLEXES JRNL REF PLOS PATHOG. V. 7 02030 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 21589902 JRNL DOI 10.1371/JOURNAL.PPAT.1002030 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 105426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 339 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 966 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6059 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8209 ; 0.883 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 4.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;35.744 ;23.440 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1103 ;12.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;17.047 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 892 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4616 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3737 ; 0.352 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5995 ; 0.692 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2322 ; 1.052 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2190 ; 1.811 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3OV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 156.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3OUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGNO3, 17%(W/V) PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 180.87800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 90.43900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 156.64494 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 79.77 -103.20 REMARK 500 MET A 145 43.97 -89.07 REMARK 500 ILE A 209 116.33 75.31 REMARK 500 MET B 145 42.38 -86.52 REMARK 500 ILE B 209 116.89 76.62 REMARK 500 MET C 145 44.00 -88.59 REMARK 500 LEU C 184 30.43 -81.93 REMARK 500 ILE C 209 116.28 73.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 247 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 206 O REMARK 620 2 ILE A 209 O 113.6 REMARK 620 3 HOH A 564 O 112.9 117.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 247 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 960 O REMARK 620 2 ALA B 109 O 79.2 REMARK 620 3 SER B 148 O 141.7 110.7 REMARK 620 4 HOH B 356 O 121.6 118.9 87.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO2 A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO2 B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO2 C 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OUO RELATED DB: PDB REMARK 900 N RIFT VALLEY FEVER VIRUS DBREF 3OV9 A 1 245 UNP P21700 NCAP_RVFVZ 1 245 DBREF 3OV9 B 1 245 UNP P21700 NCAP_RVFVZ 1 245 DBREF 3OV9 C 1 245 UNP P21700 NCAP_RVFVZ 1 245 SEQRES 1 A 245 MET ASP ASN TYR GLN GLU LEU ARG VAL GLN PHE ALA ALA SEQRES 2 A 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 A 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 A 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 A 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 A 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 A 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 A 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 A 245 SER ARG VAL ALA ALA ALA LEU ALA GLY TRP THR CYS GLN SEQRES 10 A 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 A 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 A 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 A 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 A 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 A 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 A 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 A 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 A 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 A 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 B 245 MET ASP ASN TYR GLN GLU LEU ARG VAL GLN PHE ALA ALA SEQRES 2 B 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 B 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 B 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 B 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 B 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 B 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 B 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 B 245 SER ARG VAL ALA ALA ALA LEU ALA GLY TRP THR CYS GLN SEQRES 10 B 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 B 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 B 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 B 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 B 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 B 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 B 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 B 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 B 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 B 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 C 245 MET ASP ASN TYR GLN GLU LEU ARG VAL GLN PHE ALA ALA SEQRES 2 C 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 C 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 C 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 C 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 C 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 C 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 C 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 C 245 SER ARG VAL ALA ALA ALA LEU ALA GLY TRP THR CYS GLN SEQRES 10 C 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 C 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 C 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 C 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 C 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 C 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 C 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 C 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 C 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 C 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA HET NO2 A 246 3 HET NA A 247 1 HET NO2 B 246 3 HET NA B 247 1 HET NO2 C 246 3 HETNAM NO2 NITRITE ION HETNAM NA SODIUM ION FORMUL 4 NO2 3(N O2 1-) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *966(H2 O) HELIX 1 1 ASN A 3 GLN A 14 1 12 HELIX 2 2 ASP A 17 ALA A 29 1 13 HELIX 3 3 ASP A 34 GLY A 47 1 14 HELIX 4 4 ASP A 49 ARG A 64 1 16 HELIX 5 5 LYS A 67 MET A 72 1 6 HELIX 6 6 MET A 73 MET A 75 5 3 HELIX 7 7 SER A 76 LYS A 91 1 16 HELIX 8 8 THR A 103 LEU A 111 1 9 HELIX 9 9 LEU A 111 SER A 123 1 13 HELIX 10 10 GLU A 124 LEU A 126 5 3 HELIX 11 11 THR A 129 SER A 137 1 9 HELIX 12 12 PRO A 141 MET A 145 5 5 HELIX 13 13 HIS A 146 VAL A 153 5 8 HELIX 14 14 PRO A 158 ASN A 181 1 24 HELIX 15 15 THR A 188 ASN A 205 1 18 HELIX 16 16 SER A 210 PHE A 221 1 12 HELIX 17 17 SER A 231 ALA A 244 1 14 HELIX 18 18 ASN B 3 ALA B 13 1 11 HELIX 19 19 ASP B 17 PHE B 28 1 12 HELIX 20 20 ASP B 34 GLY B 47 1 14 HELIX 21 21 ASP B 49 ARG B 64 1 16 HELIX 22 22 LYS B 67 MET B 72 1 6 HELIX 23 23 MET B 73 MET B 75 5 3 HELIX 24 24 SER B 76 LYS B 91 1 16 HELIX 25 25 THR B 103 LEU B 111 1 9 HELIX 26 26 LEU B 111 SER B 123 1 13 HELIX 27 27 GLU B 124 LEU B 126 5 3 HELIX 28 28 THR B 129 SER B 137 1 9 HELIX 29 29 PRO B 141 MET B 145 5 5 HELIX 30 30 HIS B 146 VAL B 153 5 8 HELIX 31 31 PRO B 158 ASN B 181 1 24 HELIX 32 32 PRO B 182 ARG B 185 5 4 HELIX 33 33 THR B 188 ASN B 205 1 18 HELIX 34 34 SER B 210 PHE B 221 1 12 HELIX 35 35 SER B 231 THR B 243 1 13 HELIX 36 36 ASN C 3 ALA C 13 1 11 HELIX 37 37 ASP C 17 ALA C 29 1 13 HELIX 38 38 ASP C 34 GLY C 47 1 14 HELIX 39 39 ASP C 49 ARG C 64 1 16 HELIX 40 40 LYS C 67 MET C 72 1 6 HELIX 41 41 MET C 73 MET C 75 5 3 HELIX 42 42 SER C 76 LYS C 91 1 16 HELIX 43 43 THR C 103 LEU C 111 1 9 HELIX 44 44 LEU C 111 SER C 123 1 13 HELIX 45 45 GLU C 124 LEU C 126 5 3 HELIX 46 46 THR C 129 GLY C 135 1 7 HELIX 47 47 PRO C 141 MET C 145 5 5 HELIX 48 48 HIS C 146 VAL C 153 5 8 HELIX 49 49 PRO C 158 ASN C 181 1 24 HELIX 50 50 PRO C 182 ARG C 185 5 4 HELIX 51 51 THR C 188 ASN C 205 1 18 HELIX 52 52 SER C 210 PHE C 221 1 12 HELIX 53 53 SER C 231 THR C 243 1 13 LINK O SER A 206 NA NA A 247 1555 1555 2.96 LINK O ILE A 209 NA NA A 247 1555 1555 2.84 LINK NA NA A 247 O HOH A 564 1555 1555 2.52 LINK O HOH A 960 NA NA B 247 1555 1555 2.91 LINK O ALA B 109 NA NA B 247 1555 1555 2.96 LINK O SER B 148 NA NA B 247 1555 1555 2.96 LINK NA NA B 247 O HOH B 356 1555 1555 2.82 SITE 1 AC1 9 GLY A 32 PHE A 33 ALA A 202 ALA A 203 SITE 2 AC1 9 SER A 206 HOH A 258 HOH A 259 HOH A 328 SITE 3 AC1 9 HOH A 336 SITE 1 AC2 3 SER A 206 ILE A 209 HOH A 564 SITE 1 AC3 10 GLN B 31 GLY B 32 PHE B 33 ALA B 202 SITE 2 AC3 10 ALA B 203 SER B 206 HOH B 258 HOH B 262 SITE 3 AC3 10 HOH B 278 HOH B 358 SITE 1 AC4 5 HOH A 960 ALA B 109 SER B 148 GLY B 151 SITE 2 AC4 5 HOH B 356 SITE 1 AC5 8 GLY C 32 PHE C 33 ALA C 202 ALA C 203 SITE 2 AC5 8 SER C 206 HOH C 262 HOH C 284 HOH C 400 CRYST1 180.878 180.878 47.743 90.00 90.00 120.00 P 6 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005529 0.003192 0.000000 0.00000 SCALE2 0.000000 0.006384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020945 0.00000