HEADER UNKNOWN FUNCTION 20-SEP-10 3OWR TITLE CRYSTAL STRUCTURE OF A PUTATIVE SECRETED PROTEIN (BF4250) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.81 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 GENE: BF4250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CARBOHYDRATE METABOLISM, PUTATIVE GLYCOSIDE HYDROLASE, IG-LIKE, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3OWR 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3OWR 1 REMARK REVDAT 4 24-DEC-14 3OWR 1 TITLE REVDAT 3 20-JUL-11 3OWR 1 KEYWDS REVDAT 2 27-OCT-10 3OWR 1 REMARK REVDAT 1 20-OCT-10 3OWR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BF4250) FROM JRNL TITL 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.81 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4149 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.435 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4080 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2668 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5566 ; 1.460 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6565 ; 0.808 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;32.400 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;11.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4590 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 793 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2595 ; 1.616 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1057 ; 0.506 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4195 ; 2.598 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 4.052 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1355 ; 5.769 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 33 A 159 6 REMARK 3 1 B 33 B 159 6 REMARK 3 1 C 33 C 159 6 REMARK 3 1 D 33 D 159 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1426 ; 0.880 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 1426 ; 1.110 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 1426 ; 0.960 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 1426 ; 0.870 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1426 ; 1.830 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1426 ; 1.820 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 1426 ; 2.640 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 1426 ; 2.690 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9609 33.6729 26.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.0316 T22: 0.0212 REMARK 3 T33: 0.0186 T12: -0.0153 REMARK 3 T13: 0.0016 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4633 L22: 0.3220 REMARK 3 L33: 1.8025 L12: 0.1763 REMARK 3 L13: 0.4666 L23: 0.1580 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.0168 S13: -0.0576 REMARK 3 S21: 0.0434 S22: 0.0227 S23: -0.0196 REMARK 3 S31: 0.0807 S32: -0.0490 S33: -0.0273 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2124 36.0342 58.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.0493 REMARK 3 T33: 0.0172 T12: -0.0190 REMARK 3 T13: 0.0044 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.3190 L22: 0.6997 REMARK 3 L33: 0.8875 L12: 0.0081 REMARK 3 L13: 0.0691 L23: -0.3483 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.0154 S13: 0.0224 REMARK 3 S21: -0.0620 S22: -0.0125 S23: 0.0094 REMARK 3 S31: 0.0330 S32: -0.0580 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 159 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0209 8.0619 71.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0569 REMARK 3 T33: 0.0436 T12: -0.0210 REMARK 3 T13: -0.0066 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.4204 L22: 1.0011 REMARK 3 L33: 2.0287 L12: 0.1234 REMARK 3 L13: 0.0826 L23: 0.6860 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0091 S13: -0.0426 REMARK 3 S21: -0.0046 S22: 0.0300 S23: -0.0372 REMARK 3 S31: -0.0352 S32: 0.1338 S33: -0.0360 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 31 D 159 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3263 12.8708 38.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0480 REMARK 3 T33: 0.0246 T12: -0.0161 REMARK 3 T13: -0.0111 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.5811 L22: 0.3479 REMARK 3 L33: 0.9394 L12: 0.0923 REMARK 3 L13: -0.2699 L23: -0.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0582 S13: 0.0105 REMARK 3 S21: 0.0149 S22: 0.0061 S23: 0.0047 REMARK 3 S31: -0.0478 S32: 0.0151 S33: 0.0069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM TLS GROUP ASSIGNMENT. 5. REMARK 3 PHOSPHATE (PO4) AND POLYETHYLENE GLYCOL FRAGMENTS (PG4,PEG) FROM REMARK 3 THE CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED INTO THE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3OWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.33 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903,0.97922,0.91837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 46.496 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45.5% POLYETHYLENE GLYCOL 600, 0.1M REMARK 280 PHOSPHATE-CITRATE PH 4.33, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 LEU A 31 REMARK 465 PRO A 32 REMARK 465 GLY B 0 REMARK 465 SER B 27 REMARK 465 LYS B 28 REMARK 465 GLU B 29 REMARK 465 ASP B 30 REMARK 465 LEU B 31 REMARK 465 GLY C 0 REMARK 465 SER C 27 REMARK 465 LYS C 28 REMARK 465 GLU C 29 REMARK 465 ASP C 30 REMARK 465 LEU C 31 REMARK 465 GLY D 0 REMARK 465 SER D 27 REMARK 465 LYS D 28 REMARK 465 GLU D 29 REMARK 465 ASP D 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 53 CE NZ REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 LYS A 126 CE NZ REMARK 470 PRO B 32 CG CD REMARK 470 TYR B 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 PRO C 32 CG CD REMARK 470 TYR C 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 ILE C 56 CG1 CG2 CD1 REMARK 470 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 122 CG OD1 OD2 REMARK 470 LYS C 159 CE NZ REMARK 470 LEU D 31 CG CD1 CD2 REMARK 470 TYR D 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 117 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 105 45.19 -147.13 REMARK 500 ASN A 105 41.89 -145.45 REMARK 500 SER A 113 151.37 -48.91 REMARK 500 ASN B 105 66.60 -156.38 REMARK 500 ASN C 105 50.66 -142.52 REMARK 500 ASP C 122 122.53 -24.63 REMARK 500 ASN D 105 78.64 -154.85 REMARK 500 ASP D 122 -138.84 58.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG C 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 163 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416701 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3P69 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BF4250) FROM REMARK 900 BACTEROIDES FRAGILIS NCTC 9343 AT 2.05 A RESOLUTION (RHOMBOHEDRAL REMARK 900 FORM - HEXAGONAL SETTING) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 27-159) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3OWR A 27 159 UNP Q5L7M9 Q5L7M9_BACFN 27 159 DBREF 3OWR B 27 159 UNP Q5L7M9 Q5L7M9_BACFN 27 159 DBREF 3OWR C 27 159 UNP Q5L7M9 Q5L7M9_BACFN 27 159 DBREF 3OWR D 27 159 UNP Q5L7M9 Q5L7M9_BACFN 27 159 SEQADV 3OWR GLY A 0 UNP Q5L7M9 EXPRESSION TAG SEQADV 3OWR GLY B 0 UNP Q5L7M9 EXPRESSION TAG SEQADV 3OWR GLY C 0 UNP Q5L7M9 EXPRESSION TAG SEQADV 3OWR GLY D 0 UNP Q5L7M9 EXPRESSION TAG SEQRES 1 A 134 GLY SER LYS GLU ASP LEU PRO ALA TYR GLU GLU ALA GLU SEQRES 2 A 134 ILE THR LYS VAL GLY ALA TYR HIS ARG PHE TYR SER GLY SEQRES 3 A 134 ASP LYS ASP ALA ILE THR GLY GLU ASN ILE VAL ALA GLU SEQRES 4 A 134 LYS GLU LEU ASP ARG THR ASN ASN ILE ASP SER GLU HIS SEQRES 5 A 134 GLY VAL ALA THR ALA VAL PHE THR ILE PRO ALA ALA GLY SEQRES 6 A 134 GLY LYS PHE THR GLU ALA GLU ARG ALA LYS VAL SER LEU SEQRES 7 A 134 SER ASN LEU VAL VAL TYR VAL ASN VAL SER THR ALA ALA SEQRES 8 A 134 ARG VAL THR PRO LEU ASP GLY SER PRO LYS PHE GLY VAL SEQRES 9 A 134 PRO ALA ASP TRP THR ARG GLU HIS LYS TYR SER VAL MSE SEQRES 10 A 134 ALA ALA ASP GLY THR LYS LYS ILE TRP THR VAL LYS VAL SEQRES 11 A 134 THR LEU ASN LYS SEQRES 1 B 134 GLY SER LYS GLU ASP LEU PRO ALA TYR GLU GLU ALA GLU SEQRES 2 B 134 ILE THR LYS VAL GLY ALA TYR HIS ARG PHE TYR SER GLY SEQRES 3 B 134 ASP LYS ASP ALA ILE THR GLY GLU ASN ILE VAL ALA GLU SEQRES 4 B 134 LYS GLU LEU ASP ARG THR ASN ASN ILE ASP SER GLU HIS SEQRES 5 B 134 GLY VAL ALA THR ALA VAL PHE THR ILE PRO ALA ALA GLY SEQRES 6 B 134 GLY LYS PHE THR GLU ALA GLU ARG ALA LYS VAL SER LEU SEQRES 7 B 134 SER ASN LEU VAL VAL TYR VAL ASN VAL SER THR ALA ALA SEQRES 8 B 134 ARG VAL THR PRO LEU ASP GLY SER PRO LYS PHE GLY VAL SEQRES 9 B 134 PRO ALA ASP TRP THR ARG GLU HIS LYS TYR SER VAL MSE SEQRES 10 B 134 ALA ALA ASP GLY THR LYS LYS ILE TRP THR VAL LYS VAL SEQRES 11 B 134 THR LEU ASN LYS SEQRES 1 C 134 GLY SER LYS GLU ASP LEU PRO ALA TYR GLU GLU ALA GLU SEQRES 2 C 134 ILE THR LYS VAL GLY ALA TYR HIS ARG PHE TYR SER GLY SEQRES 3 C 134 ASP LYS ASP ALA ILE THR GLY GLU ASN ILE VAL ALA GLU SEQRES 4 C 134 LYS GLU LEU ASP ARG THR ASN ASN ILE ASP SER GLU HIS SEQRES 5 C 134 GLY VAL ALA THR ALA VAL PHE THR ILE PRO ALA ALA GLY SEQRES 6 C 134 GLY LYS PHE THR GLU ALA GLU ARG ALA LYS VAL SER LEU SEQRES 7 C 134 SER ASN LEU VAL VAL TYR VAL ASN VAL SER THR ALA ALA SEQRES 8 C 134 ARG VAL THR PRO LEU ASP GLY SER PRO LYS PHE GLY VAL SEQRES 9 C 134 PRO ALA ASP TRP THR ARG GLU HIS LYS TYR SER VAL MSE SEQRES 10 C 134 ALA ALA ASP GLY THR LYS LYS ILE TRP THR VAL LYS VAL SEQRES 11 C 134 THR LEU ASN LYS SEQRES 1 D 134 GLY SER LYS GLU ASP LEU PRO ALA TYR GLU GLU ALA GLU SEQRES 2 D 134 ILE THR LYS VAL GLY ALA TYR HIS ARG PHE TYR SER GLY SEQRES 3 D 134 ASP LYS ASP ALA ILE THR GLY GLU ASN ILE VAL ALA GLU SEQRES 4 D 134 LYS GLU LEU ASP ARG THR ASN ASN ILE ASP SER GLU HIS SEQRES 5 D 134 GLY VAL ALA THR ALA VAL PHE THR ILE PRO ALA ALA GLY SEQRES 6 D 134 GLY LYS PHE THR GLU ALA GLU ARG ALA LYS VAL SER LEU SEQRES 7 D 134 SER ASN LEU VAL VAL TYR VAL ASN VAL SER THR ALA ALA SEQRES 8 D 134 ARG VAL THR PRO LEU ASP GLY SER PRO LYS PHE GLY VAL SEQRES 9 D 134 PRO ALA ASP TRP THR ARG GLU HIS LYS TYR SER VAL MSE SEQRES 10 D 134 ALA ALA ASP GLY THR LYS LYS ILE TRP THR VAL LYS VAL SEQRES 11 D 134 THR LEU ASN LYS MODRES 3OWR MSE A 142 MET SELENOMETHIONINE MODRES 3OWR MSE B 142 MET SELENOMETHIONINE MODRES 3OWR MSE C 142 MET SELENOMETHIONINE MODRES 3OWR MSE D 142 MET SELENOMETHIONINE HET MSE A 142 8 HET MSE B 142 8 HET MSE C 142 8 HET MSE D 142 8 HET PEG A 166 7 HET PO4 B 160 5 HET PO4 B 162 5 HET PG4 B 164 13 HET PO4 C 161 5 HET PEG C 165 7 HET PO4 D 163 5 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 PO4 4(O4 P 3-) FORMUL 8 PG4 C8 H18 O5 FORMUL 12 HOH *455(H2 O) HELIX 1 1 SER A 75 HIS A 77 5 3 HELIX 2 2 THR A 94 ALA A 99 1 6 HELIX 3 3 LYS A 100 VAL A 101 5 2 HELIX 4 4 SER A 102 LEU A 106 5 5 HELIX 5 5 PRO B 32 GLU B 36 5 5 HELIX 6 6 THR B 94 ALA B 99 1 6 HELIX 7 7 LYS B 100 VAL B 101 5 2 HELIX 8 8 SER B 102 ASN B 105 5 4 HELIX 9 9 PRO C 32 GLU C 36 5 5 HELIX 10 10 SER C 75 HIS C 77 5 3 HELIX 11 11 THR C 94 ALA C 99 1 6 HELIX 12 12 LYS C 100 VAL C 101 5 2 HELIX 13 13 SER C 102 ASN C 105 5 4 HELIX 14 14 LEU D 31 GLU D 36 5 6 HELIX 15 15 THR D 94 ALA D 99 1 6 SHEET 1 A 3 ASN A 60 GLU A 66 0 SHEET 2 A 3 ILE A 39 LYS A 53 -1 N ASP A 52 O ILE A 61 SHEET 3 A 3 VAL A 107 VAL A 112 -1 O TYR A 109 N GLY A 43 SHEET 1 B 5 ASP A 68 ASP A 74 0 SHEET 2 B 5 VAL A 79 THR A 85 -1 O VAL A 79 N ASP A 74 SHEET 3 B 5 LYS A 148 ASN A 158 1 O THR A 152 N ALA A 80 SHEET 4 B 5 HIS A 137 MSE A 142 -1 N HIS A 137 O VAL A 153 SHEET 5 B 5 ARG A 117 PRO A 120 -1 N ARG A 117 O MSE A 142 SHEET 1 C 4 ASN B 60 GLU B 66 0 SHEET 2 C 4 ILE B 39 LYS B 53 -1 N PHE B 48 O ALA B 63 SHEET 3 C 4 LEU B 106 VAL B 112 -1 O ASN B 111 N THR B 40 SHEET 4 C 4 PRO B 130 ALA B 131 -1 O ALA B 131 N LEU B 106 SHEET 1 D 5 ASP B 68 ASP B 74 0 SHEET 2 D 5 VAL B 79 THR B 85 -1 O VAL B 79 N ASP B 74 SHEET 3 D 5 LYS B 148 LEU B 157 1 O THR B 152 N ALA B 80 SHEET 4 D 5 HIS B 137 MSE B 142 -1 N TYR B 139 O TRP B 151 SHEET 5 D 5 ARG B 117 PRO B 120 -1 N ARG B 117 O MSE B 142 SHEET 1 E 4 ASN C 60 GLU C 66 0 SHEET 2 E 4 ILE C 39 LYS C 53 -1 N ASP C 52 O ILE C 61 SHEET 3 E 4 LEU C 106 VAL C 112 -1 O TYR C 109 N GLY C 43 SHEET 4 E 4 PRO C 130 ALA C 131 -1 O ALA C 131 N LEU C 106 SHEET 1 F 5 ASP C 68 ASP C 74 0 SHEET 2 F 5 VAL C 79 THR C 85 -1 O VAL C 79 N ASP C 74 SHEET 3 F 5 LYS C 148 ASN C 158 1 O THR C 156 N PHE C 84 SHEET 4 F 5 HIS C 137 MSE C 142 -1 N HIS C 137 O VAL C 153 SHEET 5 F 5 ARG C 117 PRO C 120 -1 N ARG C 117 O MSE C 142 SHEET 1 G 4 ASN D 60 GLU D 66 0 SHEET 2 G 4 ILE D 39 LYS D 53 -1 N PHE D 48 O ALA D 63 SHEET 3 G 4 LEU D 106 VAL D 112 -1 O TYR D 109 N GLY D 43 SHEET 4 G 4 PRO D 130 ALA D 131 -1 O ALA D 131 N LEU D 106 SHEET 1 H 5 ASP D 68 ASP D 74 0 SHEET 2 H 5 VAL D 79 THR D 85 -1 O VAL D 79 N ASP D 74 SHEET 3 H 5 LYS D 148 LEU D 157 1 O THR D 152 N ALA D 80 SHEET 4 H 5 HIS D 137 MSE D 142 -1 N HIS D 137 O VAL D 153 SHEET 5 H 5 ARG D 117 PRO D 120 -1 N ARG D 117 O MSE D 142 LINK C VAL A 141 N MSE A 142 1555 1555 1.34 LINK C MSE A 142 N ALA A 143 1555 1555 1.32 LINK C VAL B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N ALA B 143 1555 1555 1.33 LINK C VAL C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N ALA C 143 1555 1555 1.33 LINK C VAL D 141 N MSE D 142 1555 1555 1.32 LINK C MSE D 142 N ALA D 143 1555 1555 1.32 SITE 1 AC1 4 THR A 85 ILE A 86 LYS A 159 HOH A 295 SITE 1 AC2 8 GLU A 64 LYS A 65 GLU A 66 LYS B 65 SITE 2 AC2 8 GLU B 66 PRO B 87 HOH B 201 HOH B 286 SITE 1 AC3 8 GLU B 36 SER B 102 SER B 113 THR B 114 SITE 2 AC3 8 LYS B 159 HOH B 189 HOH B 356 HOH B 494 SITE 1 AC4 9 HOH A 266 SER B 50 ASP B 52 GLY B 91 SITE 2 AC4 9 LYS B 92 HOH B 539 HOH B 548 LYS D 53 SITE 3 AC4 9 GLY D 58 SITE 1 AC5 7 GLU C 64 LYS C 65 GLU C 66 HOH C 315 SITE 2 AC5 7 LYS D 65 GLU D 66 HOH D 261 SITE 1 AC6 3 ILE C 86 LYS C 159 HOH C 430 SITE 1 AC7 8 GLU D 36 SER D 102 SER D 113 THR D 114 SITE 2 AC7 8 LYS D 159 HOH D 253 HOH D 280 HOH D 342 CRYST1 103.967 103.967 59.866 90.00 90.00 90.00 P 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016704 0.00000