HEADER TRANSFERASE 28-SEP-10 3P0F TITLE STRUCTURE OF HUPP2 IN AN INACTIVE CONFORMATION WITH BOUND 5- TITLE 2 BENZYLACYCLOURIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE PHOSPHORYLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-314; COMPND 5 SYNONYM: URDPASE 2, UPASE 2; COMPND 6 EC: 2.4.2.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UPP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS411 KEYWDS URIDINE PHOSPHORYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.ROOSILD,S.CASTRONOVO,A.VILLOSO REVDAT 5 30-OCT-24 3P0F 1 REMARK REVDAT 4 06-SEP-23 3P0F 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3P0F 1 REMARK REVDAT 2 19-OCT-11 3P0F 1 JRNL REVDAT 1 07-SEP-11 3P0F 0 JRNL AUTH T.P.ROOSILD,S.CASTRONOVO,A.VILLOSO,A.ZIEMBA,G.PIZZORNO JRNL TITL A NOVEL STRUCTURAL MECHANISM FOR REDOX REGULATION OF URIDINE JRNL TITL 2 PHOSPHORYLASE 2 ACTIVITY. JRNL REF J.STRUCT.BIOL. V. 176 229 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21855639 JRNL DOI 10.1016/J.JSB.2011.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 51304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.331 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2372 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3201 ; 1.392 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;32.889 ;23.592 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;12.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.016 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1765 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1098 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1647 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 1.025 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2357 ; 1.602 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 2.479 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 3.878 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PBD ENTRY 3EUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYVINYLPYRROLIDONE K15, 0.1M REMARK 280 COBALT CHLORIDE, 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.65350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.84800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.84800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.98025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.84800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.84800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.32675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.84800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.84800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.98025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.84800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.84800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.32675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 94.65350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.65350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 178 -127.70 52.34 REMARK 500 ASP A 179 48.85 -109.63 REMARK 500 TYR A 220 -88.07 -97.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 1 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 ALA A 248 O 88.8 REMARK 620 3 HOH A 399 O 94.3 84.6 REMARK 620 4 HOH A 471 O 90.9 176.7 92.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 2 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD1 REMARK 620 2 HIS A 133 NE2 173.1 REMARK 620 3 HOH A 383 O 84.8 93.1 REMARK 620 4 HOH A 437 O 93.9 92.8 93.4 REMARK 620 5 HOH A 488 O 76.1 97.7 96.8 165.0 REMARK 620 6 HOH A 521 O 94.6 89.0 166.7 73.4 95.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD2 REMARK 620 2 ASP A 283 OD2 102.2 REMARK 620 3 HOH A 532 O 106.0 81.4 REMARK 620 4 HOH A 579 O 63.2 122.6 55.3 REMARK 620 5 HOH A 590 O 74.0 110.2 168.2 116.5 REMARK 620 6 HOH A 598 O 174.1 82.5 78.1 117.3 101.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BAU A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P0E RELATED DB: PDB REMARK 900 ALTERNATE CONFORMATION OF SAME PROTEIN DBREF 3P0F A 21 314 UNP O95045 UPP2_HUMAN 21 314 SEQADV 3P0F GLY A 18 UNP O95045 EXPRESSION TAG SEQADV 3P0F SER A 19 UNP O95045 EXPRESSION TAG SEQADV 3P0F SER A 20 UNP O95045 EXPRESSION TAG SEQRES 1 A 297 GLY SER SER GLY LYS ARG PHE VAL HIS VAL LYS ASN PRO SEQRES 2 A 297 TYR LEU ASP LEU MET ASP GLU ASP ILE LEU TYR HIS LEU SEQRES 3 A 297 ASP LEU GLY THR LYS THR HIS ASN LEU PRO ALA MET PHE SEQRES 4 A 297 GLY ASP VAL LYS PHE VAL CYS VAL GLY GLY SER PRO ASN SEQRES 5 A 297 ARG MET LYS ALA PHE ALA LEU PHE MET HIS LYS GLU LEU SEQRES 6 A 297 GLY PHE GLU GLU ALA GLU GLU ASP ILE LYS ASP ILE CYS SEQRES 7 A 297 ALA GLY THR ASP ARG TYR CYS MET TYR LYS THR GLY PRO SEQRES 8 A 297 VAL LEU ALA ILE SER HIS GLY MET GLY ILE PRO SER ILE SEQRES 9 A 297 SER ILE MET LEU HIS GLU LEU ILE LYS LEU LEU HIS HIS SEQRES 10 A 297 ALA ARG CYS CYS ASP VAL THR ILE ILE ARG ILE GLY THR SEQRES 11 A 297 SER GLY GLY ILE GLY ILE ALA PRO GLY THR VAL VAL ILE SEQRES 12 A 297 THR ASP ILE ALA VAL ASP SER PHE PHE LYS PRO ARG PHE SEQRES 13 A 297 GLU GLN VAL ILE LEU ASP ASN ILE VAL THR ARG SER THR SEQRES 14 A 297 GLU LEU ASP LYS GLU LEU SER GLU GLU LEU PHE ASN CYS SEQRES 15 A 297 SER LYS GLU ILE PRO ASN PHE PRO THR LEU VAL GLY HIS SEQRES 16 A 297 THR MET CYS THR TYR ASP PHE TYR GLU GLY GLN GLY ARG SEQRES 17 A 297 LEU ASP GLY ALA LEU CYS SER PHE SER ARG GLU LYS LYS SEQRES 18 A 297 LEU ASP TYR LEU LYS ARG ALA PHE LYS ALA GLY VAL ARG SEQRES 19 A 297 ASN ILE GLU MET GLU SER THR VAL PHE ALA ALA MET CYS SEQRES 20 A 297 GLY LEU CYS GLY LEU LYS ALA ALA VAL VAL CYS VAL THR SEQRES 21 A 297 LEU LEU ASP ARG LEU ASP CYS ASP GLN ILE ASN LEU PRO SEQRES 22 A 297 HIS ASP VAL LEU VAL GLU TYR GLN GLN ARG PRO GLN LEU SEQRES 23 A 297 LEU ILE SER ASN PHE ILE ARG ARG ARG LEU GLY HET BAU A 400 20 HET CO A 1 1 HET CO A 2 1 HET MG A 315 1 HETNAM BAU 1-((2-HYDROXYETHOXY)METHYL)-5-BENZYLPYRIMIDINE-2,4(1H, HETNAM 2 BAU 3H)-DIONE HETNAM CO COBALT (II) ION HETNAM MG MAGNESIUM ION FORMUL 2 BAU C14 H16 N2 O4 FORMUL 3 CO 2(CO 2+) FORMUL 5 MG MG 2+ FORMUL 6 HOH *304(H2 O) HELIX 1 1 TYR A 31 MET A 35 5 5 HELIX 2 2 TYR A 41 ASP A 44 5 4 HELIX 3 3 ASN A 51 GLY A 57 1 7 HELIX 4 4 SER A 67 GLY A 83 1 17 HELIX 5 5 GLY A 117 ALA A 135 1 19 HELIX 6 6 ASP A 189 GLU A 202 1 14 HELIX 7 7 TYR A 220 GLY A 224 5 5 HELIX 8 8 SER A 234 GLY A 249 1 16 HELIX 9 9 GLU A 256 CYS A 267 1 12 HELIX 10 10 PRO A 290 GLN A 299 1 10 HELIX 11 11 GLN A 299 GLY A 314 1 16 SHEET 1 A 2 ILE A 39 LEU A 40 0 SHEET 2 A 2 LEU A 45 GLY A 46 -1 O LEU A 45 N LEU A 40 SHEET 1 B 9 MET A 103 THR A 106 0 SHEET 2 B 9 VAL A 109 SER A 113 -1 O VAL A 109 N THR A 106 SHEET 3 B 9 PHE A 61 GLY A 65 1 N PHE A 61 O LEU A 110 SHEET 4 B 9 THR A 141 GLY A 150 1 O ILE A 143 N VAL A 62 SHEET 5 B 9 LYS A 270 ASP A 280 1 O VAL A 274 N ARG A 144 SHEET 6 B 9 VAL A 158 VAL A 165 -1 N VAL A 159 O CYS A 275 SHEET 7 B 9 THR A 208 CYS A 215 1 O THR A 213 N VAL A 165 SHEET 8 B 9 VAL A 250 GLU A 254 1 O ARG A 251 N HIS A 212 SHEET 9 B 9 THR A 141 GLY A 150 -1 N GLY A 149 O ILE A 253 SHEET 1 C 2 ARG A 172 ILE A 177 0 SHEET 2 C 2 ASN A 180 SER A 185 -1 O VAL A 182 N GLN A 175 SSBOND 1 CYS A 95 CYS A 102 1555 1555 2.06 LINK CO CO A 1 NE2 HIS A 212 1555 1555 2.14 LINK CO CO A 1 O ALA A 248 1555 1555 2.23 LINK CO CO A 1 O HOH A 399 1555 1555 2.02 LINK CO CO A 1 O HOH A 471 1555 1555 2.16 LINK CO CO A 2 OD1 ASP A 33 1555 1555 2.09 LINK CO CO A 2 NE2 HIS A 133 1555 1555 2.07 LINK CO CO A 2 O HOH A 383 1555 1555 2.13 LINK CO CO A 2 O HOH A 437 1555 1555 2.24 LINK CO CO A 2 O HOH A 488 1555 1555 2.22 LINK CO CO A 2 O HOH A 521 1555 1555 2.24 LINK OD2 ASP A 280 MG MG A 315 1555 1555 2.30 LINK OD2 ASP A 283 MG MG A 315 1555 1555 2.48 LINK MG MG A 315 O HOH A 532 1555 1555 2.63 LINK MG MG A 315 O HOH A 579 1555 1555 2.68 LINK MG MG A 315 O HOH A 590 1555 1555 2.14 LINK MG MG A 315 O HOH A 598 1555 1555 2.15 SITE 1 AC1 16 HIS A 42 MET A 116 THR A 147 SER A 148 SITE 2 AC1 16 GLY A 149 PHE A 219 GLN A 223 ARG A 225 SITE 3 AC1 16 ILE A 253 GLU A 254 MET A 255 ASP A 285 SITE 4 AC1 16 ILE A 287 HOH A 407 HOH A 465 HOH A 486 SITE 1 AC2 6 HIS A 79 HIS A 212 ALA A 248 HOH A 354 SITE 2 AC2 6 HOH A 399 HOH A 471 SITE 1 AC3 6 ASP A 33 HIS A 133 HOH A 383 HOH A 437 SITE 2 AC3 6 HOH A 488 HOH A 521 SITE 1 AC4 7 ASP A 280 ASP A 283 HOH A 516 HOH A 532 SITE 2 AC4 7 HOH A 579 HOH A 590 HOH A 598 CRYST1 59.696 59.696 189.307 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005282 0.00000