HEADER HYDROLASE 04-OCT-10 3P32 TITLE HYDROLYSIS OF GTP TO GDP BY AN MCM-ASSOCIATED AND MEAB- AND MMAA-LIKE TITLE 2 G-PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GTPASE RV1496/MT1543; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MT1543, MTCY277.18, RV1496; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MEAB, MMAA, METHYLMALONIC ACIDURIA KEYWDS 3 PROTEIN A, GTPASE, G-PROTEIN, MCM, METHYLMALONYL-COA MUTASE, KEYWDS 4 INCORRECTLY ASSIGNED AS AN ARGININE/ORNITHINE TRANSPORT SYSTEM KEYWDS 5 ATPASE, METHYLMAOLONYL PATHWAY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3P32 1 REMARK SEQADV REVDAT 3 03-JUN-15 3P32 1 JRNL REVDAT 2 22-APR-15 3P32 1 JRNL VERSN REVDAT 1 10-NOV-10 3P32 0 JRNL AUTH T.E.EDWARDS,L.BAUGH,J.BULLEN,R.O.BAYDO,P.WITTE,K.THOMPKINS, JRNL AUTH 2 I.Q.PHAN,J.ABENDROTH,M.C.CLIFTON,B.SANKARAN,W.C.VAN VOORHIS, JRNL AUTH 3 P.J.MYLER,B.L.STAKER,C.GRUNDNER,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-LIKE JRNL TITL 2 GTPASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 91 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25832174 JRNL DOI 10.1007/S10969-015-9197-2 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2348 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3202 ; 1.406 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;33.275 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;13.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1728 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2418 ; 1.653 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 831 ; 2.423 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 783 ; 4.045 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5463 23.8091 -1.7719 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.1763 REMARK 3 T33: 0.2891 T12: 0.0820 REMARK 3 T13: -0.1117 T23: -0.0884 REMARK 3 L TENSOR REMARK 3 L11: 1.0055 L22: 1.2442 REMARK 3 L33: 0.1662 L12: 0.0883 REMARK 3 L13: 0.4248 L23: -0.3716 REMARK 3 S TENSOR REMARK 3 S11: 0.2217 S12: 0.2123 S13: -0.2637 REMARK 3 S21: 0.0242 S22: 0.0110 S23: -0.1816 REMARK 3 S31: 0.1485 S32: 0.1596 S33: -0.2327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7613 44.1240 -9.6764 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2604 REMARK 3 T33: 0.2019 T12: -0.0152 REMARK 3 T13: -0.0088 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1564 L22: 0.1936 REMARK 3 L33: 1.0748 L12: -0.1499 REMARK 3 L13: 0.3223 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.0993 S13: 0.0281 REMARK 3 S21: 0.0470 S22: -0.0097 S23: 0.0078 REMARK 3 S31: -0.0279 S32: 0.0728 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8486 24.5299 -1.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.1551 REMARK 3 T33: 0.2324 T12: -0.0379 REMARK 3 T13: 0.0046 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.1940 L22: 2.6476 REMARK 3 L33: 1.6802 L12: -0.0145 REMARK 3 L13: 0.5151 L23: 1.7625 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -0.1148 S13: -0.0815 REMARK 3 S21: 0.0925 S22: 0.0715 S23: 0.1189 REMARK 3 S31: 0.1052 S32: -0.0202 S33: -0.0587 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2335 7.6293 -31.4455 REMARK 3 T TENSOR REMARK 3 T11: 0.4361 T22: 0.0171 REMARK 3 T33: 0.1242 T12: 0.0822 REMARK 3 T13: -0.0487 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 0.1109 L22: 6.8560 REMARK 3 L33: 3.5112 L12: -2.4944 REMARK 3 L13: 1.2026 L23: 0.6828 REMARK 3 S TENSOR REMARK 3 S11: 0.4105 S12: -0.0878 S13: -0.1350 REMARK 3 S21: -0.7498 S22: 0.0161 S23: 0.1040 REMARK 3 S31: 0.1477 S32: 0.2134 S33: -0.4266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3P32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.0 MG/ML MYTUD00200AA1 PW25862 REMARK 280 AGAINST 48% PEG 200, 0.1 M NA/K PHOSPHATE PH 6.2, 0.2 M NACL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.25000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.93000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.25000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.93000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 94.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.25000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 ASP A 9 REMARK 465 PRO A 96 REMARK 465 SER A 97 REMARK 465 SER A 98 REMARK 465 THR A 99 REMARK 465 ARG A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 ILE A 105 REMARK 465 LEU A 106 REMARK 465 GLY A 107 REMARK 465 ASP A 108 REMARK 465 LYS A 109 REMARK 465 THR A 110 REMARK 465 ARG A 111 REMARK 465 THR A 128 REMARK 465 SER A 129 REMARK 465 ARG A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 159 CG1 CG2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 18.10 -141.47 REMARK 500 LYS A 205 35.78 76.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 161 GLY A 162 148.34 REMARK 500 GLY A 162 GLN A 163 143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 337 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MDO RELATED DB: PDB REMARK 900 STRUCTURE CRYSTALLIZED IN THE PRESENCE OF GDP REMARK 900 RELATED ID: 3NXS RELATED DB: PDB REMARK 900 STRUCTURE OF SAME PROTEIN FROM MYCOBACTERIUM SMEGATIS BOUND TO GDP REMARK 900 RELATED ID: 2GM7 RELATED DB: PDB REMARK 900 MEAB, A BACTERIAL HOMOLOG OF MMAA, BOUND TO GDP REMARK 900 RELATED ID: 2WWW RELATED DB: PDB REMARK 900 HUMAN METHYLMALONIC ACIDEMIA TYPE A PROTEIN MMAA REMARK 900 RELATED ID: MYTUD.00200.A RELATED DB: TARGETDB DBREF 3P32 A 1 334 UNP P63577 Y1496_MYCTU 1 334 SEQADV 3P32 MET A -20 UNP P63577 EXPRESSION TAG SEQADV 3P32 ALA A -19 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -18 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -17 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -16 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -15 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -14 UNP P63577 EXPRESSION TAG SEQADV 3P32 HIS A -13 UNP P63577 EXPRESSION TAG SEQADV 3P32 MET A -12 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLY A -11 UNP P63577 EXPRESSION TAG SEQADV 3P32 THR A -10 UNP P63577 EXPRESSION TAG SEQADV 3P32 LEU A -9 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLU A -8 UNP P63577 EXPRESSION TAG SEQADV 3P32 ALA A -7 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLN A -6 UNP P63577 EXPRESSION TAG SEQADV 3P32 THR A -5 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLN A -4 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLY A -3 UNP P63577 EXPRESSION TAG SEQADV 3P32 PRO A -2 UNP P63577 EXPRESSION TAG SEQADV 3P32 GLY A -1 UNP P63577 EXPRESSION TAG SEQADV 3P32 SER A 0 UNP P63577 EXPRESSION TAG SEQRES 1 A 355 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 355 ALA GLN THR GLN GLY PRO GLY SER MET MET ALA ALA SER SEQRES 3 A 355 HIS ASP ASP ASP THR VAL ASP GLY LEU ALA THR ALA VAL SEQRES 4 A 355 ARG GLY GLY ASP ARG ALA ALA LEU PRO ARG ALA ILE THR SEQRES 5 A 355 LEU VAL GLU SER THR ARG PRO ASP HIS ARG GLU GLN ALA SEQRES 6 A 355 GLN GLN LEU LEU LEU ARG LEU LEU PRO ASP SER GLY ASN SEQRES 7 A 355 ALA HIS ARG VAL GLY ILE THR GLY VAL PRO GLY VAL GLY SEQRES 8 A 355 LYS SER THR ALA ILE GLU ALA LEU GLY MET HIS LEU ILE SEQRES 9 A 355 GLU ARG GLY HIS ARG VAL ALA VAL LEU ALA VAL ASP PRO SEQRES 10 A 355 SER SER THR ARG THR GLY GLY SER ILE LEU GLY ASP LYS SEQRES 11 A 355 THR ARG MET ALA ARG LEU ALA VAL HIS PRO ASN ALA TYR SEQRES 12 A 355 ILE ARG PRO SER PRO THR SER GLY THR LEU GLY GLY VAL SEQRES 13 A 355 THR ARG ALA THR ARG GLU THR VAL VAL LEU LEU GLU ALA SEQRES 14 A 355 ALA GLY PHE ASP VAL ILE LEU ILE GLU THR VAL GLY VAL SEQRES 15 A 355 GLY GLN SER GLU VAL ALA VAL ALA ASN MET VAL ASP THR SEQRES 16 A 355 PHE VAL LEU LEU THR LEU ALA ARG THR GLY ASP GLN LEU SEQRES 17 A 355 GLN GLY ILE LYS LYS GLY VAL LEU GLU LEU ALA ASP ILE SEQRES 18 A 355 VAL VAL VAL ASN LYS ALA ASP GLY GLU HIS HIS LYS GLU SEQRES 19 A 355 ALA ARG LEU ALA ALA ARG GLU LEU SER ALA ALA ILE ARG SEQRES 20 A 355 LEU ILE TYR PRO ARG GLU ALA LEU TRP ARG PRO PRO VAL SEQRES 21 A 355 LEU THR MET SER ALA VAL GLU GLY ARG GLY LEU ALA GLU SEQRES 22 A 355 LEU TRP ASP THR VAL GLU ARG HIS ARG GLN VAL LEU THR SEQRES 23 A 355 GLY ALA GLY GLU PHE ASP ALA ARG ARG ARG ASP GLN GLN SEQRES 24 A 355 VAL ASP TRP THR TRP GLN LEU VAL ARG ASP ALA VAL LEU SEQRES 25 A 355 ASP ARG VAL TRP SER ASN PRO THR VAL ARG LYS VAL ARG SEQRES 26 A 355 SER GLU LEU GLU ARG ARG VAL ARG ALA GLY GLU LEU THR SEQRES 27 A 355 PRO ALA LEU ALA ALA GLN GLN ILE LEU GLU ILE ALA ASN SEQRES 28 A 355 LEU THR ASP ARG HET GDP A 335 28 HET PGE A 336 20 HET PGE A 337 10 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 PGE 2(C6 H14 O4) FORMUL 5 HOH *140(H2 O) HELIX 1 1 THR A 10 GLY A 20 1 11 HELIX 2 2 ALA A 24 SER A 35 1 12 HELIX 3 3 ARG A 37 LEU A 52 1 16 HELIX 4 4 PRO A 53 SER A 55 5 3 HELIX 5 5 GLY A 70 GLU A 84 1 15 HELIX 6 6 MET A 112 VAL A 117 1 6 HELIX 7 7 THR A 131 ALA A 149 1 19 HELIX 8 8 GLN A 163 ASN A 170 1 8 HELIX 9 9 VAL A 194 ALA A 198 5 5 HELIX 10 10 ASP A 207 GLU A 209 5 3 HELIX 11 11 HIS A 210 TYR A 229 1 20 HELIX 12 12 SER A 243 GLY A 247 5 5 HELIX 13 13 GLY A 249 ALA A 267 1 19 HELIX 14 14 GLY A 268 SER A 296 1 29 HELIX 15 15 ASN A 297 ALA A 313 1 17 HELIX 16 16 THR A 317 ASP A 333 1 17 SHEET 1 A 7 ALA A 121 ARG A 124 0 SHEET 2 A 7 VAL A 89 VAL A 94 1 N VAL A 91 O TYR A 122 SHEET 3 A 7 VAL A 153 THR A 158 1 O LEU A 155 N ALA A 90 SHEET 4 A 7 HIS A 59 THR A 64 1 N VAL A 61 O ILE A 154 SHEET 5 A 7 THR A 174 LEU A 180 1 O VAL A 176 N GLY A 62 SHEET 6 A 7 ILE A 200 ASN A 204 1 O VAL A 202 N LEU A 177 SHEET 7 A 7 VAL A 239 MET A 242 1 O LEU A 240 N VAL A 203 SITE 1 AC1 15 GLY A 68 VAL A 69 GLY A 70 LYS A 71 SITE 2 AC1 15 SER A 72 THR A 73 ASN A 204 LYS A 205 SITE 3 AC1 15 ASP A 207 SER A 243 ALA A 244 VAL A 245 SITE 4 AC1 15 HOH A 415 HOH A 460 HOH A 461 SITE 1 AC2 7 GLU A 232 ALA A 233 LEU A 234 TRP A 235 SITE 2 AC2 7 ARG A 236 HOH A 475 HOH A 476 SITE 1 AC3 11 LYS A 192 GLU A 196 LEU A 197 ALA A 198 SITE 2 AC3 11 ASP A 199 TYR A 229 GLU A 232 TRP A 235 SITE 3 AC3 11 ARG A 273 HOH A 382 HOH A 474 CRYST1 65.860 188.220 66.500 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015038 0.00000