HEADER TRANSFERASE 04-OCT-10 3P37 TITLE POLO-LIKE KINASE I POLO-BOX DOMAIN IN COMPLEX WITH FDPPLHSPTA TITLE 2 PHOSPHOPEPTIDE FROM PBIP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: POLO-BOX DOMAIN; COMPND 5 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 6 13, STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHOPEPTIDE; COMPND 11 CHAIN: E, D, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS PHOSPHOPROTEIN BINDING DOMAIN, PLK1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SLEDZ,M.HYVONEN,C.ABELL REVDAT 3 30-OCT-24 3P37 1 REMARK REVDAT 2 01-NOV-23 3P37 1 REMARK SEQADV LINK REVDAT 1 27-APR-11 3P37 0 JRNL AUTH P.SLEDZ,C.J.STUBBS,S.LANG,Y.Q.YANG,G.J.MCKENZIE, JRNL AUTH 2 A.R.VENKITARAMAN,M.HYVONEN,C.ABELL JRNL TITL FROM CRYSTAL PACKING TO MOLECULAR RECOGNITION: PREDICTION JRNL TITL 2 AND DISCOVERY OF A BINDING SITE ON THE SURFACE OF POLO-LIKE JRNL TITL 3 KINASE 1 JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 50 4003 2011 JRNL REFN ISSN 1433-7851 JRNL PMID 21472932 JRNL DOI 10.1002/ANIE.201008019 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.004 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5596 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7597 ; 1.061 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 688 ; 5.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;31.945 ;22.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 913 ;17.171 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 856 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4185 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3466 ; 0.551 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5557 ; 1.003 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2130 ; 0.732 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2038 ; 1.201 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5370 1.0490 17.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.1808 REMARK 3 T33: 0.1262 T12: -0.0139 REMARK 3 T13: 0.0479 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.5760 L22: 2.9242 REMARK 3 L33: 4.0662 L12: -0.5672 REMARK 3 L13: 0.9485 L23: -2.0760 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: 0.0264 S13: 0.0529 REMARK 3 S21: -0.0307 S22: -0.0544 S23: -0.0803 REMARK 3 S31: 0.0678 S32: 0.0905 S33: 0.1489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 373 B 590 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5870 1.7590 -2.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.2569 REMARK 3 T33: 0.1185 T12: 0.0008 REMARK 3 T13: 0.0470 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.3503 L22: 4.4734 REMARK 3 L33: 2.9012 L12: 0.8160 REMARK 3 L13: 0.3306 L23: -1.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1249 S13: -0.1176 REMARK 3 S21: -0.1676 S22: -0.1342 S23: 0.2831 REMARK 3 S31: 0.0534 S32: -0.0041 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 373 C 590 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3050 0.0340 37.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.3038 REMARK 3 T33: 0.1035 T12: 0.0316 REMARK 3 T13: 0.0431 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.8785 L22: 4.0689 REMARK 3 L33: 2.9841 L12: 0.6993 REMARK 3 L13: -0.2737 L23: -0.9003 REMARK 3 S TENSOR REMARK 3 S11: -0.2038 S12: -0.1796 S13: 0.1145 REMARK 3 S21: -0.0543 S22: 0.0306 S23: 0.2845 REMARK 3 S31: 0.0090 S32: 0.1315 S33: 0.1732 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25445 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 62.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UMW (CHAIN A) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 30% PEG 400, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.32900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 PHE B 8 REMARK 465 ASP B 371 REMARK 465 CYS B 372 REMARK 465 GLY B 502 REMARK 465 ASP B 503 REMARK 465 GLU B 504 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 GLY C 4 REMARK 465 SER C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 PHE C 8 REMARK 465 ASP C 371 REMARK 465 CYS C 372 REMARK 465 GLY C 502 REMARK 465 ASP C 503 REMARK 465 NH2 E 80 REMARK 465 NH2 F 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 371 CG OD1 OD2 REMARK 470 LYS A 388 CE NZ REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 LYS A 420 CD CE NZ REMARK 470 ARG A 456 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 468 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 470 CG OD1 ND2 REMARK 470 LYS A 474 CD CE NZ REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 LEU A 505 CG CD1 CD2 REMARK 470 ARG A 512 NE CZ NH1 NH2 REMARK 470 ARG A 518 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 ARG A 557 NE CZ NH1 NH2 REMARK 470 ARG A 563 NE CZ NH1 NH2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 ARG A 594 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 373 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 379 CG CD OE1 NE2 REMARK 470 GLU B 391 CG CD OE1 OE2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 GLU B 455 CG CD OE1 OE2 REMARK 470 LEU B 463 CG CD1 CD2 REMARK 470 HIS B 468 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 470 CG OD1 ND2 REMARK 470 GLU B 501 CG CD OE1 OE2 REMARK 470 ARG B 518 NE CZ NH1 NH2 REMARK 470 GLU B 555 CG CD OE1 OE2 REMARK 470 GLU B 569 CG CD OE1 OE2 REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 HIS C 373 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 379 CG CD OE1 NE2 REMARK 470 LYS C 388 CG CD CE NZ REMARK 470 ASP C 449 CG OD1 OD2 REMARK 470 LEU C 463 CG CD1 CD2 REMARK 470 HIS C 468 CG ND1 CD2 CE1 NE2 REMARK 470 ASN C 470 CG OD1 ND2 REMARK 470 MET C 473 CG SD CE REMARK 470 LYS C 474 CG CD CE NZ REMARK 470 LYS C 480 CG CD CE NZ REMARK 470 GLU C 501 CG CD OE1 OE2 REMARK 470 GLU C 504 CG CD OE1 OE2 REMARK 470 LEU C 505 CG CD1 CD2 REMARK 470 ARG C 507 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 516 NE CZ NH1 NH2 REMARK 470 ARG C 518 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 556 CD CE NZ REMARK 470 LYS C 574 CG CD CE NZ REMARK 470 LYS C 589 CE NZ REMARK 470 ARG C 594 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 391 49.94 -88.78 REMARK 500 LYS A 420 -53.49 -123.54 REMARK 500 ASN A 430 5.02 85.30 REMARK 500 ASP A 449 -43.04 -138.43 REMARK 500 LEU A 463 -159.99 -151.61 REMARK 500 LYS B 388 74.35 50.76 REMARK 500 SER B 418 -9.51 -58.43 REMARK 500 LYS B 420 -55.10 -136.88 REMARK 500 ASP B 449 -47.30 -141.07 REMARK 500 HIS B 468 71.62 54.74 REMARK 500 LYS C 388 72.46 49.84 REMARK 500 GLU C 391 48.39 -92.93 REMARK 500 ARG C 396 72.46 -111.61 REMARK 500 TYR C 421 -49.76 -133.37 REMARK 500 SER C 439 18.84 57.99 REMARK 500 ASP C 449 -44.09 -130.11 REMARK 500 SER E 77 -178.13 -66.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P2W RELATED DB: PDB REMARK 900 RELATED ID: 3P2Z RELATED DB: PDB REMARK 900 RELATED ID: 3P34 RELATED DB: PDB REMARK 900 RELATED ID: 3P35 RELATED DB: PDB REMARK 900 RELATED ID: 3P36 RELATED DB: PDB DBREF 3P37 A 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P37 B 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P37 C 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P37 E 70 80 PDB 3P37 3P37 70 80 DBREF 3P37 D 70 80 PDB 3P37 3P37 70 80 DBREF 3P37 F 70 80 PDB 3P37 3P37 70 80 SEQADV 3P37 GLY A 1 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO A 2 UNP P53350 EXPRESSION TAG SEQADV 3P37 LEU A 3 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLY A 4 UNP P53350 EXPRESSION TAG SEQADV 3P37 SER A 5 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO A 6 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLU A 7 UNP P53350 EXPRESSION TAG SEQADV 3P37 PHE A 8 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLY B 1 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO B 2 UNP P53350 EXPRESSION TAG SEQADV 3P37 LEU B 3 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLY B 4 UNP P53350 EXPRESSION TAG SEQADV 3P37 SER B 5 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO B 6 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLU B 7 UNP P53350 EXPRESSION TAG SEQADV 3P37 PHE B 8 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLY C 1 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO C 2 UNP P53350 EXPRESSION TAG SEQADV 3P37 LEU C 3 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLY C 4 UNP P53350 EXPRESSION TAG SEQADV 3P37 SER C 5 UNP P53350 EXPRESSION TAG SEQADV 3P37 PRO C 6 UNP P53350 EXPRESSION TAG SEQADV 3P37 GLU C 7 UNP P53350 EXPRESSION TAG SEQADV 3P37 PHE C 8 UNP P53350 EXPRESSION TAG SEQRES 1 A 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 A 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 A 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 A 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 A 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 A 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 A 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 A 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 A 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 A 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 A 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 A 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 A 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 A 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 A 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 A 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 A 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 A 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 B 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 B 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 B 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 B 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 B 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 B 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 B 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 B 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 B 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 B 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 B 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 B 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 B 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 B 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 B 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 B 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 B 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 B 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 C 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 C 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 C 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 C 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 C 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 C 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 C 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 C 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 C 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 C 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 C 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 C 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 C 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 C 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 C 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 C 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 C 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 C 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 E 11 ACE PHE ASP PRO PRO LEU HIS SER TPO ALA NH2 SEQRES 1 D 11 ACE PHE ASP PRO PRO LEU HIS SER TPO ALA NH2 SEQRES 1 F 11 ACE PHE ASP PRO PRO LEU HIS SER TPO ALA NH2 MODRES 3P37 TPO E 78 THR PHOSPHOTHREONINE MODRES 3P37 TPO D 78 THR PHOSPHOTHREONINE MODRES 3P37 TPO F 78 THR PHOSPHOTHREONINE HET ACE E 70 3 HET TPO E 78 11 HET ACE D 70 3 HET TPO D 78 11 HET NH2 D 80 1 HET ACE F 70 3 HET TPO F 78 11 HET GOL A 3 6 HET GOL A 5 6 HET GOL B 2 6 HET GOL C 1 6 HETNAM ACE ACETYL GROUP HETNAM TPO PHOSPHOTHREONINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ACE 3(C2 H4 O) FORMUL 4 TPO 3(C4 H10 N O6 P) FORMUL 5 NH2 H2 N FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 HOH *116(H2 O) HELIX 1 1 ASP A 371 SER A 387 1 17 HELIX 2 2 ARG A 396 GLU A 401 5 6 HELIX 3 3 ASP A 402 ILE A 406 5 5 HELIX 4 4 SER A 466 HIS A 468 5 3 HELIX 5 5 PRO A 469 SER A 471 5 3 HELIX 6 6 LEU A 472 LEU A 490 1 19 HELIX 7 7 LEU A 564 GLY A 571 1 8 HELIX 8 8 CYS A 573 SER A 593 1 21 HELIX 9 9 HIS B 373 SER B 387 1 15 HELIX 10 10 ARG B 396 GLU B 401 5 6 HELIX 11 11 ASP B 402 ILE B 406 5 5 HELIX 12 12 LEU B 472 LEU B 490 1 19 HELIX 13 13 LEU B 564 GLY B 571 1 8 HELIX 14 14 CYS B 573 SER B 593 1 21 HELIX 15 15 HIS C 373 SER C 387 1 15 HELIX 16 16 ARG C 396 GLU C 401 5 6 HELIX 17 17 ASP C 402 ILE C 406 5 5 HELIX 18 18 PRO C 469 SER C 471 5 3 HELIX 19 19 LEU C 472 LEU C 490 1 19 HELIX 20 20 LEU C 564 GLY C 571 1 8 HELIX 21 21 CYS C 573 SER C 593 1 21 SHEET 1 A 7 GLU A 460 THR A 464 0 SHEET 2 A 7 SER A 450 ILE A 454 -1 N LEU A 451 O LEU A 463 SHEET 3 A 7 ARG A 441 LEU A 444 -1 N ARG A 441 O ILE A 454 SHEET 4 A 7 VAL A 432 PHE A 436 -1 N VAL A 432 O LEU A 444 SHEET 5 A 7 GLY A 422 LEU A 427 -1 N LEU A 423 O LEU A 435 SHEET 6 A 7 VAL A 411 ASP A 416 -1 N VAL A 415 O GLY A 424 SHEET 7 A 7 LEU E 75 HIS E 76 -1 O LEU E 75 N ASP A 416 SHEET 1 B 6 LEU A 511 ARG A 516 0 SHEET 2 B 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 B 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 B 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 B 6 ALA A 549 ILE A 553 -1 O THR A 551 N ILE A 542 SHEET 6 B 6 PHE A 559 ARG A 563 -1 O TYR A 562 N VAL A 550 SHEET 1 C 7 GLU B 460 THR B 464 0 SHEET 2 C 7 SER B 450 ILE B 454 -1 N LEU B 451 O LEU B 463 SHEET 3 C 7 ARG B 441 LEU B 444 -1 N ARG B 441 O ILE B 454 SHEET 4 C 7 VAL B 432 PHE B 436 -1 N VAL B 432 O LEU B 444 SHEET 5 C 7 GLY B 422 LEU B 427 -1 N LEU B 423 O LEU B 435 SHEET 6 C 7 VAL B 411 ASP B 416 -1 N VAL B 415 O GLY B 424 SHEET 7 C 7 LEU D 75 HIS D 76 -1 O LEU D 75 N ASP B 416 SHEET 1 D 6 LEU B 511 ARG B 516 0 SHEET 2 D 6 ALA B 520 LEU B 525 -1 O ILE B 522 N PHE B 515 SHEET 3 D 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 D 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 D 6 ALA B 549 ILE B 553 -1 O ALA B 549 N CYS B 544 SHEET 6 D 6 PHE B 559 ARG B 563 -1 O TYR B 562 N VAL B 550 SHEET 1 E 7 GLU C 460 SER C 461 0 SHEET 2 E 7 LEU C 451 ILE C 454 -1 N TYR C 453 O SER C 461 SHEET 3 E 7 ARG C 441 LEU C 444 -1 N ARG C 441 O ILE C 454 SHEET 4 E 7 VAL C 432 PHE C 436 -1 N VAL C 432 O LEU C 444 SHEET 5 E 7 GLY C 422 LEU C 427 -1 N LEU C 423 O LEU C 435 SHEET 6 E 7 VAL C 411 TYR C 417 -1 N VAL C 415 O GLY C 424 SHEET 7 E 7 LEU F 75 HIS F 76 -1 O LEU F 75 N ASP C 416 SHEET 1 F 6 LEU C 511 ARG C 516 0 SHEET 2 F 6 ALA C 520 LEU C 525 -1 O ILE C 522 N PHE C 515 SHEET 3 F 6 VAL C 530 PHE C 534 -1 O GLN C 531 N LEU C 523 SHEET 4 F 6 LYS C 540 CYS C 544 -1 O LEU C 543 N VAL C 530 SHEET 5 F 6 ALA C 549 ILE C 553 -1 O ALA C 549 N CYS C 544 SHEET 6 F 6 PHE C 559 ARG C 563 -1 O TYR C 562 N VAL C 550 LINK C ACE E 70 N PHE E 71 1555 1555 1.34 LINK C SER E 77 N TPO E 78 1555 1555 1.34 LINK C TPO E 78 N ALA E 79 1555 1555 1.33 LINK C ACE D 70 N PHE D 71 1555 1555 1.33 LINK C SER D 77 N TPO D 78 1555 1555 1.33 LINK C TPO D 78 N ALA D 79 1555 1555 1.34 LINK C ALA D 79 N NH2 D 80 1555 1555 1.34 LINK C ACE F 70 N PHE F 71 1555 1555 1.34 LINK C SER F 77 N TPO F 78 1555 1555 1.33 LINK C TPO F 78 N ALA F 79 1555 1555 1.34 SITE 1 AC1 1 GLU A 455 SITE 1 AC2 2 HOH A 135 TRP A 514 SITE 1 AC3 4 HOH B 131 ASP B 376 GLN B 380 PRO B 545 CRYST1 58.969 88.658 67.590 90.00 113.48 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016958 0.000000 0.007367 0.00000 SCALE2 0.000000 0.011279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016131 0.00000