data_3P46 # _entry.id 3P46 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3P46 pdb_00003p46 10.2210/pdb3p46/pdb RCSB RCSB061933 ? ? WWPDB D_1000061933 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2011-01-12 ? 2 'Structure model' 1 1 2011-07-13 ? 3 'Structure model' 1 2 2025-03-26 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3P46 _pdbx_database_status.recvd_initial_deposition_date 2010-10-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'McEwan, P.A.' 1 'Emsley, J.' 2 # _citation.id primary _citation.title 'End-stapled homo and hetero collagen triple helices: a click chemistry approach.' _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_volume 47 _citation.page_first 2589 _citation.page_last 2591 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1359-7345 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21173963 _citation.pdbx_database_id_DOI 10.1039/c0cc04795c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Byrne, C.' 1 ? primary 'McEwan, P.A.' 2 ? primary 'Emsley, J.' 3 ? primary 'Fischer, P.M.' 4 ? primary 'Chan, W.C.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Synthetic collagen peptide' 1651.754 3 ? ? ? ? 2 water nat water 18.015 80 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GP(HYP)GP(HYP)GL(HYP)GEAGP(HYP)GP(HYP)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XGPPGPPGLPGEAGPPGPPX _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 PRO n 1 4 HYP n 1 5 GLY n 1 6 PRO n 1 7 HYP n 1 8 GLY n 1 9 LEU n 1 10 HYP n 1 11 GLY n 1 12 GLU n 1 13 ALA n 1 14 GLY n 1 15 PRO n 1 16 HYP n 1 17 GLY n 1 18 PRO n 1 19 HYP n 1 20 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'artificial gene' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 HYP 4 4 4 HYP HYP A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 HYP 7 7 7 HYP HYP A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 HYP 10 10 10 HYP HYP A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 HYP 16 16 16 HYP HYP A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 HYP 19 19 19 HYP HYP A . n A 1 20 NH2 20 20 20 NH2 NH2 A . n B 1 1 ACE 1 1 1 ACE ACE B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 HYP 4 4 4 HYP HYP B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 HYP 7 7 7 HYP HYP B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 HYP 10 10 10 HYP HYP B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 PRO 15 15 15 PRO PRO B . n B 1 16 HYP 16 16 16 HYP HYP B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 HYP 19 19 19 HYP HYP B . n B 1 20 NH2 20 20 ? ? ? B . n C 1 1 ACE 1 1 ? ? ? C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 PRO 3 3 3 PRO PRO C . n C 1 4 HYP 4 4 4 HYP HYP C . n C 1 5 GLY 5 5 5 GLY GLY C . n C 1 6 PRO 6 6 6 PRO PRO C . n C 1 7 HYP 7 7 7 HYP HYP C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 HYP 10 10 10 HYP HYP C . n C 1 11 GLY 11 11 11 GLY GLY C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 ALA 13 13 13 ALA ALA C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 PRO 15 15 15 PRO PRO C . n C 1 16 HYP 16 16 16 HYP HYP C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 PRO 18 18 18 PRO PRO C . n C 1 19 HYP 19 19 19 HYP HYP C . n C 1 20 NH2 20 20 20 NH2 NH2 C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 21 7 HOH HOH A . D 2 HOH 2 22 22 HOH HOH A . D 2 HOH 3 23 23 HOH HOH A . D 2 HOH 4 24 10 HOH HOH A . D 2 HOH 5 25 25 HOH HOH A . D 2 HOH 6 26 18 HOH HOH A . D 2 HOH 7 27 19 HOH HOH A . D 2 HOH 8 28 20 HOH HOH A . D 2 HOH 9 29 29 HOH HOH A . D 2 HOH 10 30 30 HOH HOH A . D 2 HOH 11 31 13 HOH HOH A . D 2 HOH 12 35 35 HOH HOH A . D 2 HOH 13 38 38 HOH HOH A . D 2 HOH 14 39 39 HOH HOH A . D 2 HOH 15 41 41 HOH HOH A . D 2 HOH 16 42 42 HOH HOH A . D 2 HOH 17 44 44 HOH HOH A . D 2 HOH 18 45 45 HOH HOH A . D 2 HOH 19 46 46 HOH HOH A . D 2 HOH 20 47 47 HOH HOH A . D 2 HOH 21 53 53 HOH HOH A . D 2 HOH 22 57 57 HOH HOH A . D 2 HOH 23 59 59 HOH HOH A . D 2 HOH 24 64 64 HOH HOH A . D 2 HOH 25 70 70 HOH HOH A . D 2 HOH 26 74 74 HOH HOH A . D 2 HOH 27 77 77 HOH HOH A . E 2 HOH 1 21 3 HOH HOH B . E 2 HOH 2 22 4 HOH HOH B . E 2 HOH 3 23 6 HOH HOH B . E 2 HOH 4 24 24 HOH HOH B . E 2 HOH 5 25 8 HOH HOH B . E 2 HOH 6 26 26 HOH HOH B . E 2 HOH 7 27 27 HOH HOH B . E 2 HOH 8 28 28 HOH HOH B . E 2 HOH 9 29 12 HOH HOH B . E 2 HOH 10 31 31 HOH HOH B . E 2 HOH 11 32 16 HOH HOH B . E 2 HOH 12 33 33 HOH HOH B . E 2 HOH 13 34 17 HOH HOH B . E 2 HOH 14 48 48 HOH HOH B . E 2 HOH 15 49 49 HOH HOH B . E 2 HOH 16 52 52 HOH HOH B . E 2 HOH 17 54 54 HOH HOH B . E 2 HOH 18 56 56 HOH HOH B . E 2 HOH 19 58 58 HOH HOH B . E 2 HOH 20 59 5 HOH HOH B . E 2 HOH 21 60 60 HOH HOH B . E 2 HOH 22 61 61 HOH HOH B . E 2 HOH 23 62 34 HOH HOH B . E 2 HOH 24 67 67 HOH HOH B . E 2 HOH 25 68 68 HOH HOH B . E 2 HOH 26 71 71 HOH HOH B . E 2 HOH 27 72 72 HOH HOH B . E 2 HOH 28 75 75 HOH HOH B . E 2 HOH 29 76 76 HOH HOH B . E 2 HOH 30 80 80 HOH HOH B . F 2 HOH 1 21 21 HOH HOH C . F 2 HOH 2 22 1 HOH HOH C . F 2 HOH 3 23 2 HOH HOH C . F 2 HOH 4 25 9 HOH HOH C . F 2 HOH 5 26 11 HOH HOH C . F 2 HOH 6 27 14 HOH HOH C . F 2 HOH 7 28 15 HOH HOH C . F 2 HOH 8 32 32 HOH HOH C . F 2 HOH 9 36 36 HOH HOH C . F 2 HOH 10 37 37 HOH HOH C . F 2 HOH 11 40 40 HOH HOH C . F 2 HOH 12 43 43 HOH HOH C . F 2 HOH 13 50 50 HOH HOH C . F 2 HOH 14 51 51 HOH HOH C . F 2 HOH 15 55 55 HOH HOH C . F 2 HOH 16 62 62 HOH HOH C . F 2 HOH 17 63 63 HOH HOH C . F 2 HOH 18 65 65 HOH HOH C . F 2 HOH 19 66 66 HOH HOH C . F 2 HOH 20 69 69 HOH HOH C . F 2 HOH 21 73 73 HOH HOH C . F 2 HOH 22 78 78 HOH HOH C . F 2 HOH 23 79 79 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 # _cell.entry_id 3P46 _cell.length_a 84.018 _cell.length_b 17.288 _cell.length_c 26.048 _cell.angle_alpha 90.00 _cell.angle_beta 91.35 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3P46 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3P46 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.0 M ammonium sulfate, 50 mM Tris pH 7.5, 0.1 M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2008-03-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Ni _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3P46 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 22.37 _reflns.d_resolution_high 1.7 _reflns.number_obs 4110 _reflns.number_all 4110 _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.45 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3P46 _refine.ls_number_reflns_obs 3914 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.37 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 94.90 _refine.ls_R_factor_obs 0.19837 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19624 _refine.ls_R_factor_R_free 0.24016 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 195 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 21.184 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] -0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.06 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.140 _refine.overall_SU_ML 0.090 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.971 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 350 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 430 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 22.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.028 0.021 ? 374 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.816 2.471 ? 533 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.143 5.000 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.652 30.000 ? 3 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.004 15.000 ? 12 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.165 0.200 ? 54 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.030 ? 324 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.326 1.500 ? 284 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.976 2.000 ? 455 'X-RAY DIFFRACTION' ? r_scbond_it 3.225 3.000 ? 90 'X-RAY DIFFRACTION' ? r_scangle_it 5.534 4.500 ? 78 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 210 _refine_ls_shell.R_factor_R_work 0.382 _refine_ls_shell.percent_reflns_obs 67.38 _refine_ls_shell.R_factor_R_free 0.421 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3P46 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3P46 _struct.title 'Integrin binding collagen peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P46 _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'collagen, integrin recognition, integrin alpha 1 beta 1, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3P46 _struct_ref.pdbx_db_accession 3P46 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code XGPPGPPGLPGEAGPPGPPX _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3P46 A 1 ? 20 ? 3P46 1 ? 20 ? 1 20 2 1 3P46 B 1 ? 20 ? 3P46 1 ? 20 ? 1 20 3 1 3P46 C 1 ? 20 ? 3P46 1 ? 20 ? 1 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3640 ? 1 MORE -14 ? 1 'SSA (A^2)' 3340 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A PRO 3 C ? ? ? 1_555 A HYP 4 N ? ? A PRO 3 A HYP 4 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale3 covale both ? A HYP 4 C ? ? ? 1_555 A GLY 5 N ? ? A HYP 4 A GLY 5 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? A PRO 6 C ? ? ? 1_555 A HYP 7 N ? ? A PRO 6 A HYP 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A HYP 7 C ? ? ? 1_555 A GLY 8 N ? ? A HYP 7 A GLY 8 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A LEU 9 C ? ? ? 1_555 A HYP 10 N ? ? A LEU 9 A HYP 10 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale7 covale both ? A HYP 10 C ? ? ? 1_555 A GLY 11 N ? ? A HYP 10 A GLY 11 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? A PRO 15 C ? ? ? 1_555 A HYP 16 N ? ? A PRO 15 A HYP 16 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale9 covale both ? A HYP 16 C ? ? ? 1_555 A GLY 17 N ? ? A HYP 16 A GLY 17 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale10 covale both ? A PRO 18 C ? ? ? 1_555 A HYP 19 N ? ? A PRO 18 A HYP 19 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale11 covale both ? A HYP 19 C ? ? ? 1_555 A NH2 20 N ? ? A HYP 19 A NH2 20 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale12 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale13 covale both ? B PRO 3 C ? ? ? 1_555 B HYP 4 N ? ? B PRO 3 B HYP 4 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale14 covale both ? B HYP 4 C ? ? ? 1_555 B GLY 5 N ? ? B HYP 4 B GLY 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? B PRO 6 C ? ? ? 1_555 B HYP 7 N ? ? B PRO 6 B HYP 7 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale16 covale both ? B HYP 7 C ? ? ? 1_555 B GLY 8 N ? ? B HYP 7 B GLY 8 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? B LEU 9 C ? ? ? 1_555 B HYP 10 N ? ? B LEU 9 B HYP 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? B HYP 10 C ? ? ? 1_555 B GLY 11 N ? ? B HYP 10 B GLY 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale19 covale both ? B PRO 15 C ? ? ? 1_555 B HYP 16 N ? ? B PRO 15 B HYP 16 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale20 covale both ? B HYP 16 C ? ? ? 1_555 B GLY 17 N ? ? B HYP 16 B GLY 17 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale21 covale both ? B PRO 18 C ? ? ? 1_555 B HYP 19 N ? ? B PRO 18 B HYP 19 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale22 covale both ? C PRO 3 C ? ? ? 1_555 C HYP 4 N ? ? C PRO 3 C HYP 4 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale23 covale both ? C HYP 4 C ? ? ? 1_555 C GLY 5 N ? ? C HYP 4 C GLY 5 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale24 covale both ? C PRO 6 C ? ? ? 1_555 C HYP 7 N ? ? C PRO 6 C HYP 7 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale25 covale both ? C HYP 7 C ? ? ? 1_555 C GLY 8 N ? ? C HYP 7 C GLY 8 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale26 covale both ? C LEU 9 C ? ? ? 1_555 C HYP 10 N ? ? C LEU 9 C HYP 10 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale27 covale both ? C HYP 10 C ? ? ? 1_555 C GLY 11 N ? ? C HYP 10 C GLY 11 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale28 covale both ? C PRO 15 C ? ? ? 1_555 C HYP 16 N ? ? C PRO 15 C HYP 16 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale29 covale both ? C HYP 16 C ? ? ? 1_555 C GLY 17 N ? ? C HYP 16 C GLY 17 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? C PRO 18 C ? ? ? 1_555 C HYP 19 N ? ? C PRO 18 C HYP 19 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale31 covale both ? C HYP 19 C ? ? ? 1_555 C NH2 20 N ? ? C HYP 19 C NH2 20 1_555 ? ? ? ? ? ? ? 1.368 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 HYP A 4 ? . . . . HYP A 4 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 2 HYP A 7 ? . . . . HYP A 7 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 3 HYP A 10 ? . . . . HYP A 10 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 4 HYP A 16 ? . . . . HYP A 16 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 5 HYP A 19 ? . . . . HYP A 19 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 6 HYP B 4 ? . . . . HYP B 4 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 7 HYP B 7 ? . . . . HYP B 7 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 8 HYP B 10 ? . . . . HYP B 10 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 9 HYP B 16 ? . . . . HYP B 16 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 10 HYP B 19 ? . . . . HYP B 19 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 11 HYP C 4 ? . . . . HYP C 4 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 12 HYP C 7 ? . . . . HYP C 7 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 13 HYP C 10 ? . . . . HYP C 10 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 14 HYP C 16 ? . . . . HYP C 16 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 15 HYP C 19 ? . . . . HYP C 19 ? 1_555 . . . . . . . PRO 1 HYP Hydroxylation 'Named protein modification' 16 ACE A 1 ? GLY A 2 ? ACE A 1 ? 1_555 GLY A 2 ? 1_555 . . GLY 12 ACE None 'Terminal acetylation' 17 ACE B 1 ? GLY B 2 ? ACE B 1 ? 1_555 GLY B 2 ? 1_555 . . GLY 12 ACE None 'Terminal acetylation' 18 NH2 A 20 ? HYP A 19 ? NH2 A 20 ? 1_555 HYP A 19 ? 1_555 . . HYP 42 NH2 None 'Terminal amidation' 19 NH2 C 20 ? HYP C 19 ? NH2 C 20 ? 1_555 HYP C 19 ? 1_555 . . HYP 42 NH2 None 'Terminal amidation' # _pdbx_entry_details.entry_id 3P46 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 HYP _pdbx_validate_symm_contact.auth_seq_id_1 4 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 24 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_456 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A HYP 19 ? ? C A HYP 19 ? ? N A NH2 20 ? ? 110.18 122.70 -12.52 1.60 Y 2 1 CA C HYP 19 ? ? C C HYP 19 ? ? N C NH2 20 ? ? 101.16 117.20 -16.04 2.20 Y 3 1 O C HYP 19 ? ? C C HYP 19 ? ? N C NH2 20 ? ? 139.25 122.70 16.55 1.60 Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 4 A HYP 4 ? PRO 4-HYDROXYPROLINE 2 A HYP 7 A HYP 7 ? PRO 4-HYDROXYPROLINE 3 A HYP 10 A HYP 10 ? PRO 4-HYDROXYPROLINE 4 A HYP 16 A HYP 16 ? PRO 4-HYDROXYPROLINE 5 A HYP 19 A HYP 19 ? PRO 4-HYDROXYPROLINE 6 B HYP 4 B HYP 4 ? PRO 4-HYDROXYPROLINE 7 B HYP 7 B HYP 7 ? PRO 4-HYDROXYPROLINE 8 B HYP 10 B HYP 10 ? PRO 4-HYDROXYPROLINE 9 B HYP 16 B HYP 16 ? PRO 4-HYDROXYPROLINE 10 B HYP 19 B HYP 19 ? PRO 4-HYDROXYPROLINE 11 C HYP 4 C HYP 4 ? PRO 4-HYDROXYPROLINE 12 C HYP 7 C HYP 7 ? PRO 4-HYDROXYPROLINE 13 C HYP 10 C HYP 10 ? PRO 4-HYDROXYPROLINE 14 C HYP 16 C HYP 16 ? PRO 4-HYDROXYPROLINE 15 C HYP 19 C HYP 19 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B NH2 20 ? B NH2 20 2 1 Y 1 C ACE 1 ? C ACE 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 GLU N N N N 21 GLU CA C N S 22 GLU C C N N 23 GLU O O N N 24 GLU CB C N N 25 GLU CG C N N 26 GLU CD C N N 27 GLU OE1 O N N 28 GLU OE2 O N N 29 GLU OXT O N N 30 GLU H H N N 31 GLU H2 H N N 32 GLU HA H N N 33 GLU HB2 H N N 34 GLU HB3 H N N 35 GLU HG2 H N N 36 GLU HG3 H N N 37 GLU HE2 H N N 38 GLU HXT H N N 39 GLY N N N N 40 GLY CA C N N 41 GLY C C N N 42 GLY O O N N 43 GLY OXT O N N 44 GLY H H N N 45 GLY H2 H N N 46 GLY HA2 H N N 47 GLY HA3 H N N 48 GLY HXT H N N 49 HOH O O N N 50 HOH H1 H N N 51 HOH H2 H N N 52 HYP N N N N 53 HYP CA C N S 54 HYP C C N N 55 HYP O O N N 56 HYP CB C N N 57 HYP CG C N R 58 HYP CD C N N 59 HYP OD1 O N N 60 HYP OXT O N N 61 HYP H H N N 62 HYP HA H N N 63 HYP HB2 H N N 64 HYP HB3 H N N 65 HYP HG H N N 66 HYP HD22 H N N 67 HYP HD23 H N N 68 HYP HD1 H N N 69 HYP HXT H N N 70 LEU N N N N 71 LEU CA C N S 72 LEU C C N N 73 LEU O O N N 74 LEU CB C N N 75 LEU CG C N N 76 LEU CD1 C N N 77 LEU CD2 C N N 78 LEU OXT O N N 79 LEU H H N N 80 LEU H2 H N N 81 LEU HA H N N 82 LEU HB2 H N N 83 LEU HB3 H N N 84 LEU HG H N N 85 LEU HD11 H N N 86 LEU HD12 H N N 87 LEU HD13 H N N 88 LEU HD21 H N N 89 LEU HD22 H N N 90 LEU HD23 H N N 91 LEU HXT H N N 92 NH2 N N N N 93 NH2 HN1 H N N 94 NH2 HN2 H N N 95 PRO N N N N 96 PRO CA C N S 97 PRO C C N N 98 PRO O O N N 99 PRO CB C N N 100 PRO CG C N N 101 PRO CD C N N 102 PRO OXT O N N 103 PRO H H N N 104 PRO HA H N N 105 PRO HB2 H N N 106 PRO HB3 H N N 107 PRO HG2 H N N 108 PRO HG3 H N N 109 PRO HD2 H N N 110 PRO HD3 H N N 111 PRO HXT H N N 112 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 GLU N CA sing N N 19 GLU N H sing N N 20 GLU N H2 sing N N 21 GLU CA C sing N N 22 GLU CA CB sing N N 23 GLU CA HA sing N N 24 GLU C O doub N N 25 GLU C OXT sing N N 26 GLU CB CG sing N N 27 GLU CB HB2 sing N N 28 GLU CB HB3 sing N N 29 GLU CG CD sing N N 30 GLU CG HG2 sing N N 31 GLU CG HG3 sing N N 32 GLU CD OE1 doub N N 33 GLU CD OE2 sing N N 34 GLU OE2 HE2 sing N N 35 GLU OXT HXT sing N N 36 GLY N CA sing N N 37 GLY N H sing N N 38 GLY N H2 sing N N 39 GLY CA C sing N N 40 GLY CA HA2 sing N N 41 GLY CA HA3 sing N N 42 GLY C O doub N N 43 GLY C OXT sing N N 44 GLY OXT HXT sing N N 45 HOH O H1 sing N N 46 HOH O H2 sing N N 47 HYP N CA sing N N 48 HYP N CD sing N N 49 HYP N H sing N N 50 HYP CA C sing N N 51 HYP CA CB sing N N 52 HYP CA HA sing N N 53 HYP C O doub N N 54 HYP C OXT sing N N 55 HYP CB CG sing N N 56 HYP CB HB2 sing N N 57 HYP CB HB3 sing N N 58 HYP CG CD sing N N 59 HYP CG OD1 sing N N 60 HYP CG HG sing N N 61 HYP CD HD22 sing N N 62 HYP CD HD23 sing N N 63 HYP OD1 HD1 sing N N 64 HYP OXT HXT sing N N 65 LEU N CA sing N N 66 LEU N H sing N N 67 LEU N H2 sing N N 68 LEU CA C sing N N 69 LEU CA CB sing N N 70 LEU CA HA sing N N 71 LEU C O doub N N 72 LEU C OXT sing N N 73 LEU CB CG sing N N 74 LEU CB HB2 sing N N 75 LEU CB HB3 sing N N 76 LEU CG CD1 sing N N 77 LEU CG CD2 sing N N 78 LEU CG HG sing N N 79 LEU CD1 HD11 sing N N 80 LEU CD1 HD12 sing N N 81 LEU CD1 HD13 sing N N 82 LEU CD2 HD21 sing N N 83 LEU CD2 HD22 sing N N 84 LEU CD2 HD23 sing N N 85 LEU OXT HXT sing N N 86 NH2 N HN1 sing N N 87 NH2 N HN2 sing N N 88 PRO N CA sing N N 89 PRO N CD sing N N 90 PRO N H sing N N 91 PRO CA C sing N N 92 PRO CA CB sing N N 93 PRO CA HA sing N N 94 PRO C O doub N N 95 PRO C OXT sing N N 96 PRO CB CG sing N N 97 PRO CB HB2 sing N N 98 PRO CB HB3 sing N N 99 PRO CG CD sing N N 100 PRO CG HG2 sing N N 101 PRO CG HG3 sing N N 102 PRO CD HD2 sing N N 103 PRO CD HD3 sing N N 104 PRO OXT HXT sing N N 105 # _atom_sites.entry_id 3P46 _atom_sites.fract_transf_matrix[1][1] 0.011902 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000280 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.057844 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.038401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ #