HEADER HYDROLASE 10-OCT-10 3P5S TITLE STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF CD38: EVIDENCE FOR TITLE 2 A CONFORMATIONALLY FLEXIBLE COVALENT ENZYME-SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD38 MOLECULE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ECTO-NAD+ GLYCOHYDROLASE; COMPND 5 EC: 3.2.2.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS CD38, CYCLIC ADP RIBOSE, ECTO-ADP-RIBOSYL CYCLASE, GLYCOSIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,H.MULLER-STAUFFLER,I.KOHN,C.CAKOU-KEFIR,R.M.STROUD, AUTHOR 2 E.KELLENBERBURGER,F.SCHUBER REVDAT 8 16-OCT-24 3P5S 1 REMARK REVDAT 7 06-SEP-23 3P5S 1 HETSYN REVDAT 6 29-JUL-20 3P5S 1 COMPND REMARK HETNAM SITE REVDAT 5 17-JUL-19 3P5S 1 REMARK REVDAT 4 08-NOV-17 3P5S 1 REMARK REVDAT 3 23-JAN-13 3P5S 1 JRNL REVDAT 2 02-MAY-12 3P5S 1 REVDAT 1 19-OCT-11 3P5S 0 JRNL AUTH P.F.EGEA,H.MULLER-STEFFNER,I.KUHN,C.CAKIR-KIEFER, JRNL AUTH 2 N.J.OPPENHEIMER,R.M.STROUD,E.KELLENBERGER,F.SCHUBER JRNL TITL INSIGHTS INTO THE MECHANISM OF BOVINE JRNL TITL 2 CD38/NAD+GLYCOHYDROLASE FROM THE X-RAY STRUCTURES OF ITS JRNL TITL 3 MICHAELIS COMPLEX AND COVALENTLY-TRAPPED INTERMEDIATES. JRNL REF PLOS ONE V. 7 34918 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22529956 JRNL DOI 10.1371/JOURNAL.PONE.0034918 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 37543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.730 REMARK 3 FREE R VALUE TEST SET COUNT : 2902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0229 - 4.1998 0.88 3720 342 0.1938 0.2130 REMARK 3 2 4.1998 - 3.3340 0.83 3401 284 0.1823 0.2316 REMARK 3 3 3.3340 - 2.9127 0.84 3380 293 0.2017 0.2306 REMARK 3 4 2.9127 - 2.6464 0.86 3471 269 0.2061 0.2719 REMARK 3 5 2.6464 - 2.4568 0.86 3441 299 0.1967 0.2555 REMARK 3 6 2.4568 - 2.3120 0.88 3513 259 0.2089 0.2888 REMARK 3 7 2.3120 - 2.1962 0.89 3529 298 0.2161 0.2769 REMARK 3 8 2.1962 - 2.1006 0.88 3477 286 0.2362 0.3092 REMARK 3 9 2.1006 - 2.0197 0.87 3501 281 0.2530 0.3003 REMARK 3 10 2.0197 - 1.9500 0.82 3208 291 0.2871 0.3633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.46700 REMARK 3 B22 (A**2) : 1.56430 REMARK 3 B33 (A**2) : 3.90280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4025 REMARK 3 ANGLE : 1.192 5458 REMARK 3 CHIRALITY : 0.079 586 REMARK 3 PLANARITY : 0.005 699 REMARK 3 DIHEDRAL : 18.888 1582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 6.0 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : COULD NOT SEE THEM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 78.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3GC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 4000, 50-250 MM AMMONIUM REMARK 280 SULFATE, 100 MM SODIUM CACODYLATE OR SODIUM ACETATE OR MES AT PH- REMARK 280 6.0-6.5, PH 6.0 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.10250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.86250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.01450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.86250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.10250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.01450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 CYS A 4 REMARK 465 CYS A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 CYS A 12 REMARK 465 TRP A 13 REMARK 465 CYS A 14 REMARK 465 VAL A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 PHE A 18 REMARK 465 PHE A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 ILE A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 ILE A 29 REMARK 465 GLY A 30 REMARK 465 ILE A 31 REMARK 465 TYR A 32 REMARK 465 LYS A 33 REMARK 465 TRP A 34 REMARK 465 HIS A 35 REMARK 465 TYR A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 ASN A 40 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 CYS B 4 REMARK 465 CYS B 5 REMARK 465 THR B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 LEU B 11 REMARK 465 CYS B 12 REMARK 465 TRP B 13 REMARK 465 CYS B 14 REMARK 465 VAL B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 PHE B 18 REMARK 465 PHE B 19 REMARK 465 LEU B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 ILE B 24 REMARK 465 THR B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 ILE B 29 REMARK 465 GLY B 30 REMARK 465 ILE B 31 REMARK 465 TYR B 32 REMARK 465 LYS B 33 REMARK 465 TRP B 34 REMARK 465 HIS B 35 REMARK 465 TYR B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 LEU B 39 REMARK 465 ASN B 40 REMARK 465 GLN B 276 REMARK 465 ARG B 277 REMARK 465 SER B 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 260 CB CG OD1 ND2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 LEU B 275 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 370 O HOH B 398 1.93 REMARK 500 O HOH B 321 O HOH B 337 1.93 REMARK 500 OG1 THR A 236 O HOH A 323 1.94 REMARK 500 O HOH A 326 O HOH A 338 1.96 REMARK 500 ND2 ASN A 201 C1 NAG A 501 1.99 REMARK 500 O HOH A 321 O HOH A 455 2.08 REMARK 500 NE2 GLN A 52 O HOH A 405 2.10 REMARK 500 O HOH A 318 O HOH A 399 2.11 REMARK 500 O GLY A 113 NH2 ARG A 197 2.12 REMARK 500 O HOH A 324 O HOH A 470 2.14 REMARK 500 OE1 GLU B 190 O HOH B 372 2.14 REMARK 500 O HOH B 383 O HOH B 390 2.15 REMARK 500 O HOH A 441 O HOH A 473 2.16 REMARK 500 O HOH A 400 O HOH A 437 2.16 REMARK 500 O HOH A 334 O HOH B 416 2.18 REMARK 500 NE2 GLN A 276 O HOH A 457 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 354 O HOH A 422 3545 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 -108.48 -83.48 REMARK 500 ALA A 106 78.91 -161.58 REMARK 500 THR A 121 31.71 -146.08 REMARK 500 ASN A 194 -137.24 66.46 REMARK 500 ARG A 277 96.89 -168.41 REMARK 500 ARG A 277 96.89 -161.71 REMARK 500 ALA B 106 72.58 -157.86 REMARK 500 ASP B 171 -67.73 -100.75 REMARK 500 THR B 174 55.32 -94.03 REMARK 500 ASN B 194 -144.56 56.13 REMARK 500 SER B 203 45.08 -97.46 REMARK 500 GLN B 225 -6.35 86.25 REMARK 500 PRO B 240 -166.73 -65.57 REMARK 500 SER B 241 -12.37 -154.48 REMARK 500 CYS B 244 10.45 -61.43 REMARK 500 ASN B 260 21.24 83.84 REMARK 500 ARG B 264 111.82 -166.17 REMARK 500 ASN B 268 94.63 15.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 501 REMARK 610 NAG B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GH3 RELATED DB: PDB REMARK 900 RELATED ID: 3KOU RELATED DB: PDB REMARK 900 RELATED ID: 3GC6 RELATED DB: PDB REMARK 900 RELATED ID: 3GHH RELATED DB: PDB DBREF 3P5S A 1 278 UNP Q9TTF5 Q9TTF5_BOVIN 1 278 DBREF 3P5S B 1 278 UNP Q9TTF5 Q9TTF5_BOVIN 1 278 SEQRES 1 A 278 MET ALA ASP CYS CYS THR PRO ARG LYS LYS LEU CYS TRP SEQRES 2 A 278 CYS VAL LEU LEU PHE PHE LEU VAL ALA GLY ILE THR GLY SEQRES 3 A 278 GLY ALA ILE GLY ILE TYR LYS TRP HIS TYR SER GLY LEU SEQRES 4 A 278 ASN ARG TRP HIS GLY ALA GLY SER THR ALA ASP PHE GLN SEQRES 5 A 278 LYS ILE ILE GLN GLU ARG CYS ASP THR TYR THR GLN THR SEQRES 6 A 278 ILE ARG PRO GLY SER ARG SER ARG ASN CYS GLN ALA ILE SEQRES 7 A 278 ARG GLN ALA PHE MET SER ALA PHE ILE SER LYS ASP PRO SEQRES 8 A 278 CYS LYS ALA THR LYS GLU ASP TYR ASN SER LEU ILE ASN SEQRES 9 A 278 LEU ALA PRO PRO THR VAL PRO CYS GLY GLN GLN VAL PHE SEQRES 10 A 278 TRP SER LYS THR LYS GLU LEU ALA HIS GLU TYR ALA LYS SEQRES 11 A 278 ARG ARG ARG LEU MET THR LEU GLU ASP THR LEU LEU GLY SEQRES 12 A 278 TYR LEU ALA ASP GLY LEU ARG TRP CYS GLY GLU PRO GLY SEQRES 13 A 278 SER SER ASP LEU ASN ILE TRP SER CYS PRO ASP TRP ARG SEQRES 14 A 278 LYS ASP CYS ARG THR ASN TYR LEU SER VAL PHE TRP GLU SEQRES 15 A 278 VAL LEU SER GLU ARG PHE ALA GLU SER ALA CYS ASN THR SEQRES 16 A 278 VAL ARG VAL VAL LEU ASN GLY SER LEU GLU ASN ALA PHE SEQRES 17 A 278 ASP SER MET SER ILE PHE GLY ARG VAL GLU ALA PRO ASN SEQRES 18 A 278 LEU ARG PRO GLN VAL GLU LEU GLU ALA TRP LEU VAL HIS SEQRES 19 A 278 ASP THR GLY LYS PRO PRO SER ASP SER CYS SER GLY SER SEQRES 20 A 278 SER ILE ARG LYS LEU LYS SER ILE LEU ASP GLY ARG ASN SEQRES 21 A 278 VAL LYS PHE ARG CYS MET ASP ASN LEU SER ARG ASP GLN SEQRES 22 A 278 PHE LEU GLN ARG SER SEQRES 1 B 278 MET ALA ASP CYS CYS THR PRO ARG LYS LYS LEU CYS TRP SEQRES 2 B 278 CYS VAL LEU LEU PHE PHE LEU VAL ALA GLY ILE THR GLY SEQRES 3 B 278 GLY ALA ILE GLY ILE TYR LYS TRP HIS TYR SER GLY LEU SEQRES 4 B 278 ASN ARG TRP HIS GLY ALA GLY SER THR ALA ASP PHE GLN SEQRES 5 B 278 LYS ILE ILE GLN GLU ARG CYS ASP THR TYR THR GLN THR SEQRES 6 B 278 ILE ARG PRO GLY SER ARG SER ARG ASN CYS GLN ALA ILE SEQRES 7 B 278 ARG GLN ALA PHE MET SER ALA PHE ILE SER LYS ASP PRO SEQRES 8 B 278 CYS LYS ALA THR LYS GLU ASP TYR ASN SER LEU ILE ASN SEQRES 9 B 278 LEU ALA PRO PRO THR VAL PRO CYS GLY GLN GLN VAL PHE SEQRES 10 B 278 TRP SER LYS THR LYS GLU LEU ALA HIS GLU TYR ALA LYS SEQRES 11 B 278 ARG ARG ARG LEU MET THR LEU GLU ASP THR LEU LEU GLY SEQRES 12 B 278 TYR LEU ALA ASP GLY LEU ARG TRP CYS GLY GLU PRO GLY SEQRES 13 B 278 SER SER ASP LEU ASN ILE TRP SER CYS PRO ASP TRP ARG SEQRES 14 B 278 LYS ASP CYS ARG THR ASN TYR LEU SER VAL PHE TRP GLU SEQRES 15 B 278 VAL LEU SER GLU ARG PHE ALA GLU SER ALA CYS ASN THR SEQRES 16 B 278 VAL ARG VAL VAL LEU ASN GLY SER LEU GLU ASN ALA PHE SEQRES 17 B 278 ASP SER MET SER ILE PHE GLY ARG VAL GLU ALA PRO ASN SEQRES 18 B 278 LEU ARG PRO GLN VAL GLU LEU GLU ALA TRP LEU VAL HIS SEQRES 19 B 278 ASP THR GLY LYS PRO PRO SER ASP SER CYS SER GLY SER SEQRES 20 B 278 SER ILE ARG LYS LEU LYS SER ILE LEU ASP GLY ARG ASN SEQRES 21 B 278 VAL LYS PHE ARG CYS MET ASP ASN LEU SER ARG ASP GLN SEQRES 22 B 278 PHE LEU GLN ARG SER HET NAG A 501 14 HET SO4 A 279 5 HET AVU A 280 35 HET NAG B 501 14 HET SO4 B 279 5 HET AVU B 280 35 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM AVU [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 AVU DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R)-4- HETNAM 3 AVU FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 4 AVU DIPHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN AVU ARABINOSYL-2-FLUORO-DEOXY-ADENOSINE DIPHOSPHATE RIBOSE, HETSYN 2 AVU ARA-2'F-ADPR FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 AVU 2(C15 H22 F N5 O12 P2) FORMUL 9 HOH *341(H2 O) HELIX 1 1 ASP A 50 ILE A 66 1 17 HELIX 2 2 ASN A 74 ILE A 87 1 14 HELIX 3 3 THR A 95 ASP A 98 5 4 HELIX 4 4 TYR A 99 ALA A 106 1 8 HELIX 5 5 THR A 121 ARG A 133 1 13 HELIX 6 6 THR A 136 ASP A 139 5 4 HELIX 7 7 THR A 140 ASP A 147 1 8 HELIX 8 8 ASN A 175 ALA A 192 1 18 HELIX 9 9 SER A 212 VAL A 217 1 6 HELIX 10 10 GLU A 218 LEU A 222 5 5 HELIX 11 11 GLY A 246 ARG A 259 1 14 HELIX 12 12 ARG A 271 ARG A 277 1 7 HELIX 13 13 ASP B 50 THR B 65 1 16 HELIX 14 14 ASN B 74 ILE B 87 1 14 HELIX 15 15 THR B 95 ASP B 98 5 4 HELIX 16 16 TYR B 99 ALA B 106 1 8 HELIX 17 17 THR B 121 ARG B 132 1 12 HELIX 18 18 THR B 136 ASP B 139 5 4 HELIX 19 19 THR B 140 ASP B 147 1 8 HELIX 20 20 ASN B 175 SER B 191 1 17 HELIX 21 21 SER B 212 VAL B 217 1 6 HELIX 22 22 GLU B 218 LEU B 222 5 5 HELIX 23 23 GLY B 246 GLY B 258 1 13 HELIX 24 24 ARG B 271 LEU B 275 1 5 SHEET 1 A 2 GLY A 44 ALA A 45 0 SHEET 2 A 2 SER A 164 CYS A 165 -1 O CYS A 165 N GLY A 44 SHEET 1 B 4 GLN A 115 SER A 119 0 SHEET 2 B 4 THR A 195 ASN A 201 1 O ARG A 197 N PHE A 117 SHEET 3 B 4 GLU A 227 HIS A 234 1 O TRP A 231 N LEU A 200 SHEET 4 B 4 LYS A 262 SER A 270 1 O LYS A 262 N LEU A 228 SHEET 1 C 4 VAL B 116 SER B 119 0 SHEET 2 C 4 THR B 195 LEU B 200 1 O ARG B 197 N PHE B 117 SHEET 3 C 4 GLU B 227 HIS B 234 1 O GLU B 227 N VAL B 196 SHEET 4 C 4 CYS B 265 SER B 270 1 O MET B 266 N ALA B 230 SSBOND 1 CYS A 59 CYS A 75 1555 1555 2.07 SSBOND 2 CYS A 92 CYS A 172 1555 1555 2.05 SSBOND 3 CYS A 112 CYS A 193 1555 1555 2.05 SSBOND 4 CYS A 152 CYS A 165 1555 1555 2.05 SSBOND 5 CYS A 244 CYS A 265 1555 1555 2.04 SSBOND 6 CYS B 59 CYS B 75 1555 1555 2.07 SSBOND 7 CYS B 92 CYS B 172 1555 1555 2.03 SSBOND 8 CYS B 112 CYS B 193 1555 1555 2.03 SSBOND 9 CYS B 152 CYS B 165 1555 1555 2.04 SSBOND 10 CYS B 244 CYS B 265 1555 1555 2.07 CISPEP 1 THR B 236 GLY B 237 0 -5.54 CRYST1 46.205 80.029 157.725 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006340 0.00000