HEADER HYDROLASE 11-OCT-10 3P5V TITLE ACTINIDIN FROM ACTINIDIA ARGUTA PLANCH (SARUSASHI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTINIDIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIDIA ARGUTA; SOURCE 3 ORGANISM_COMMON: SARUSASHI; SOURCE 4 ORGANISM_TAXID: 64478 KEYWDS SAD, CYSTEINE PROTEINASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MANICKAM,N.NIRMAL,A.SUZUKI,Y.SUGIYAMA,T.YAMANE,V.DEVADASAN,A.SHARMA REVDAT 2 22-DEC-10 3P5V 1 JRNL REVDAT 1 03-NOV-10 3P5V 0 JRNL AUTH M.YOGAVEL,N.NITHYA,A.SUZUKI,Y.SUGIYAMA,T.YAMANE, JRNL AUTH 2 D.VELMURUGAN,A.SHARMA JRNL TITL STRUCTURAL ANALYSIS OF ACTINIDIN AND A COMPARISON OF CADMIUM JRNL TITL 2 AND SULFUR ANOMALOUS SIGNALS FROM ACTINIDIN CRYSTALS JRNL TITL 3 MEASURED USING IN-HOUSE COPPER- AND CHROMIUM-ANODE X-RAY JRNL TITL 4 SOURCES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 1323 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 21123873 JRNL DOI 10.1107/S0907444910040394 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1763 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2408 ; 0.983 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 5.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;35.796 ;25.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;13.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;16.932 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1395 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 842 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1225 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.336 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 0.439 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1753 ; 0.765 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 762 ; 1.142 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 649 ; 1.689 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P5V COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB061994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M SODIUM ACETATE, 30MM REMARK 280 CADMIUM CHLORIDE , PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.63450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.11250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.11250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.63450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 211 58.43 -145.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 24 18.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 222 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 315 O REMARK 620 2 HOH A 314 O 99.3 REMARK 620 3 ASP A 176 OD2 101.2 103.2 REMARK 620 4 HOH A 290 O 82.6 168.1 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 223 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 327 O REMARK 620 2 HOH A 326 O 169.2 REMARK 620 3 HOH A 401 O 89.8 83.7 REMARK 620 4 GLU A 191 OE2 87.7 94.5 154.9 REMARK 620 5 GLU A 191 OE1 83.2 89.5 100.3 54.6 REMARK 620 6 HOH A 402 O 92.0 98.7 118.3 86.7 141.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 227 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 307 O REMARK 620 2 HOH A 309 O 138.5 REMARK 620 3 HOH A 306 O 81.4 83.9 REMARK 620 4 HOH A 308 O 79.9 102.3 157.6 REMARK 620 5 HOH A 305 O 146.3 63.7 76.3 125.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 221 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 241 O REMARK 620 2 HOH A 400 O 91.3 REMARK 620 3 HIS A 162 ND1 93.3 116.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 224 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 303 O REMARK 620 2 HOH A 328 O 97.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 225 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD2 REMARK 620 2 ASP A 111 OD1 57.4 REMARK 620 3 HOH A 403 O 127.0 69.6 REMARK 620 4 HOH A 278 O 108.8 138.8 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 226 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 329 O REMARK 620 2 ASP A 72 OD1 102.0 REMARK 620 3 HOH A 269 O 100.2 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 228 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 15 OD1 49.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AEC RELATED DB: PDB REMARK 900 RELATED ID: 2ACT RELATED DB: PDB REMARK 900 RELATED ID: 3P5U RELATED DB: PDB REMARK 900 RELATED ID: 3P5W RELATED DB: PDB REMARK 900 RELATED ID: 3P5X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. DBREF 3P5V A 1 220 PDB 3P5V 3P5V 1 220 SEQRES 1 A 220 LEU PRO ASP TYR VAL ASP TRP ARG SER SER GLY ALA VAL SEQRES 2 A 220 VAL ASP ILE LYS ASP GLN GLY GLN CYS GLY SER CSO TRP SEQRES 3 A 220 ALA PHE SER THR ILE ALA ALA VAL GLU GLY ILE ASN LYS SEQRES 4 A 220 ILE ALA THR GLY ASP LEU ILE SER LEU SER GLU GLN GLU SEQRES 5 A 220 LEU VAL ASP CYS GLY ARG THR GLN ASN THR ARG GLY CYS SEQRES 6 A 220 ASP GLY GLY PHE MET THR ASP GLY PHE GLN PHE ILE ILE SEQRES 7 A 220 ASN ASN GLY GLY ILE ASN THR GLU ALA ASN TYR PRO TYR SEQRES 8 A 220 THR ALA GLU GLU GLY GLN CYS ASN LEU ASP LEU GLN GLN SEQRES 9 A 220 GLU LYS TYR VAL SER ILE ASP THR TYR GLU ASN VAL PRO SEQRES 10 A 220 TYR ASN ASN GLU TRP ALA LEU GLN THR ALA VAL ALA TYR SEQRES 11 A 220 GLN PRO VAL SER VAL ALA LEU GLU ALA ALA GLY TYR ASN SEQRES 12 A 220 PHE GLN HIS TYR SER SER GLY ILE PHE THR GLY PRO CYS SEQRES 13 A 220 GLY THR ALA VAL ASP HIS ALA VAL THR ILE VAL GLY TYR SEQRES 14 A 220 GLY THR GLU GLY GLY ILE ASP TYR TRP ILE VAL LYS ASN SEQRES 15 A 220 SER TRP GLY THR THR TRP GLY GLU GLU GLY TYR MET ARG SEQRES 16 A 220 ILE GLN ARG ASN VAL GLY GLY VAL GLY GLN CYS GLY ILE SEQRES 17 A 220 ALA LYS LYS ALA SER TYR PRO VAL LYS TYR TYR ASN MODRES 3P5V CSO A 25 CYS S-HYDROXYCYSTEINE HET CSO A 25 7 HET CD A 221 1 HET CD A 222 1 HET CD A 223 1 HET CD A 224 1 HET CD A 225 1 HET CD A 226 1 HET CD A 227 1 HET CD A 228 1 HET CD A 229 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CD CADMIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 CD 9(CD 2+) FORMUL 11 HOH *216(H2 O) HELIX 1 1 ARG A 8 GLY A 11 5 4 HELIX 2 2 SER A 24 GLY A 43 1 20 HELIX 3 3 SER A 49 GLY A 57 1 9 HELIX 4 4 ARG A 63 GLY A 67 5 5 HELIX 5 5 PHE A 69 GLY A 81 1 13 HELIX 6 6 ASN A 99 GLN A 104 1 6 HELIX 7 7 ASN A 120 ALA A 129 1 10 HELIX 8 8 GLY A 141 HIS A 146 1 6 HELIX 9 9 GLY A 204 ILE A 208 5 5 SHEET 1 A 3 VAL A 5 ASP A 6 0 SHEET 2 A 3 HIS A 162 GLU A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 A 3 VAL A 133 LEU A 137 -1 N VAL A 133 O ILE A 166 SHEET 1 B 5 VAL A 5 ASP A 6 0 SHEET 2 B 5 HIS A 162 GLU A 172 -1 O TYR A 169 N VAL A 5 SHEET 3 B 5 ILE A 175 LYS A 181 -1 O LYS A 181 N THR A 165 SHEET 4 B 5 TYR A 193 GLN A 197 -1 O MET A 194 N VAL A 180 SHEET 5 B 5 ILE A 151 PHE A 152 1 N PHE A 152 O ARG A 195 SHEET 1 C 2 THR A 112 ASN A 115 0 SHEET 2 C 2 SER A 213 VAL A 216 -1 O VAL A 216 N THR A 112 SSBOND 1 CYS A 22 CYS A 65 1555 1555 2.04 SSBOND 2 CYS A 56 CYS A 98 1555 1555 2.04 SSBOND 3 CYS A 156 CYS A 206 1555 1555 2.05 LINK C SER A 24 N CSO A 25 1555 1555 1.26 LINK C CSO A 25 N TRP A 26 1555 1555 1.43 LINK CD CD A 222 O HOH A 315 1555 1555 2.05 LINK CD CD A 222 O HOH A 314 1555 1555 2.07 LINK CD CD A 223 O HOH A 327 1555 1555 2.07 LINK CD CD A 227 O HOH A 307 1555 1555 2.11 LINK CD CD A 227 O HOH A 309 1555 1555 2.17 LINK CD CD A 223 O HOH A 326 1555 1555 2.18 LINK OD2 ASP A 176 CD CD A 222 1555 1555 2.18 LINK CD CD A 221 O HOH A 241 1555 1555 2.22 LINK CD CD A 224 O HOH A 303 1555 1555 2.24 LINK CD CD A 221 O HOH A 400 1555 1555 2.25 LINK CD CD A 223 O HOH A 401 1555 1555 2.25 LINK OD2 ASP A 111 CD CD A 225 1555 1555 2.25 LINK CD CD A 226 O HOH A 329 1555 1555 2.26 LINK ND1 HIS A 162 CD CD A 221 1555 1555 2.32 LINK OD1 ASP A 111 CD CD A 225 1555 1555 2.32 LINK CD CD A 222 O HOH A 290 1555 1555 2.33 LINK OD1 ASP A 72 CD CD A 226 1555 1555 2.33 LINK CD CD A 227 O HOH A 306 1555 1555 2.36 LINK OE2 GLU A 191 CD CD A 223 1555 1555 2.37 LINK OE1 GLU A 191 CD CD A 223 1555 1555 2.42 LINK CD CD A 227 O HOH A 308 1555 1555 2.46 LINK CD CD A 224 O HOH A 328 1555 1555 2.50 LINK CD CD A 229 O HOH A 445 1555 1555 2.51 LINK CD CD A 223 O HOH A 402 1555 1555 2.51 LINK CD CD A 225 O BHOH A 403 1555 1555 2.55 LINK CD CD A 226 O HOH A 269 1555 1555 2.57 LINK CD CD A 225 O HOH A 278 1555 1555 2.60 LINK OD2 ASP A 15 CD CD A 228 1555 1555 2.61 LINK OD1 ASP A 15 CD CD A 228 1555 1555 2.70 LINK CD CD A 227 O BHOH A 305 1555 1555 2.70 CISPEP 1 GLY A 154 PRO A 155 0 -1.18 SITE 1 AC1 5 CSO A 25 HIS A 162 ASN A 220 HOH A 241 SITE 2 AC1 5 HOH A 400 SITE 1 AC2 5 GLU A 114 ASP A 176 HOH A 290 HOH A 314 SITE 2 AC2 5 HOH A 315 SITE 1 AC3 5 GLU A 191 HOH A 326 HOH A 327 HOH A 401 SITE 2 AC3 5 HOH A 402 SITE 1 AC4 5 ASP A 44 ASP A 101 CD A 229 HOH A 303 SITE 2 AC4 5 HOH A 328 SITE 1 AC5 5 ASP A 111 HIS A 146 HOH A 278 HOH A 302 SITE 2 AC5 5 HOH A 403 SITE 1 AC6 4 ASP A 72 HOH A 269 HOH A 329 HOH A 405 SITE 1 AC7 6 THR A 186 HOH A 305 HOH A 306 HOH A 307 SITE 2 AC7 6 HOH A 308 HOH A 309 SITE 1 AC8 2 ASP A 15 HOH A 407 SITE 1 AC9 5 ASP A 44 ASP A 101 CD A 224 HOH A 320 SITE 2 AC9 5 HOH A 445 CRYST1 47.269 55.812 70.225 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014240 0.00000