HEADER SIGNALING PROTEIN 11-OCT-10 3P6A TITLE CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF P115-RHOGEF (R399E MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 377-748; COMPND 5 SYNONYM: 115 KDA GUANINE NUCLEOTIDE EXCHANGE FACTOR, P115-RHOGEF, COMPND 6 P115RHOGEF, SUB1.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS REGULATION OF RHOA GTPASE, RHOGEF, DH, PH, RHO, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,L.GUO,S.R.SPRANG,P.C.STERNWEIS REVDAT 2 06-SEP-23 3P6A 1 SEQADV REVDAT 1 05-JAN-11 3P6A 0 JRNL AUTH Z.CHEN,L.GUO,S.R.SPRANG,P.C.STERNWEIS JRNL TITL MODULATION OF A GEF SWITCH: AUTOINHIBITION OF THE INTRINSIC JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE ACTIVITY OF P115-RHOREF JRNL REF PROTEIN SCI. V. 20 107 2011 JRNL REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3282 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5755 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7746 ; 2.012 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 681 ; 6.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;35.159 ;23.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1133 ;19.352 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;23.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 881 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4231 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3445 ; 0.831 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5580 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2310 ; 3.073 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2166 ; 4.860 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2824 ; 0.37 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2824 ; 0.68 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 411 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6700 15.0460 -10.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.0134 REMARK 3 T33: 0.2220 T12: 0.0255 REMARK 3 T13: -0.0407 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.8770 L22: 2.5472 REMARK 3 L33: 4.9148 L12: 0.7609 REMARK 3 L13: 0.7104 L23: 1.4420 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: -0.0310 S13: 0.1670 REMARK 3 S21: 0.1384 S22: -0.0101 S23: 0.0941 REMARK 3 S31: -0.2158 S32: -0.1818 S33: 0.0720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 610 A 765 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6740 39.6070 -35.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.3296 REMARK 3 T33: 0.2743 T12: -0.1069 REMARK 3 T13: 0.1070 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.8535 L22: 9.3592 REMARK 3 L33: 3.9681 L12: -0.4009 REMARK 3 L13: 0.0210 L23: 0.0629 REMARK 3 S TENSOR REMARK 3 S11: 0.1458 S12: 0.2611 S13: -0.0551 REMARK 3 S21: -0.3824 S22: -0.1206 S23: -0.5873 REMARK 3 S31: 0.1497 S32: 0.4203 S33: -0.0252 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 411 B 609 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3700 65.7240 -23.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.1832 REMARK 3 T33: 0.2270 T12: -0.0702 REMARK 3 T13: -0.0288 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.8539 L22: 2.6386 REMARK 3 L33: 4.8444 L12: 0.7445 REMARK 3 L13: -0.8687 L23: -1.2270 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.1193 S13: -0.0017 REMARK 3 S21: -0.0694 S22: 0.0112 S23: -0.1464 REMARK 3 S31: 0.0778 S32: 0.2820 S33: 0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 610 B 765 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9420 94.6630 1.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.4399 T22: 0.2552 REMARK 3 T33: 0.2739 T12: -0.0740 REMARK 3 T13: 0.1063 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 7.7927 L22: 2.9938 REMARK 3 L33: 4.1444 L12: 2.7448 REMARK 3 L13: 0.0440 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.5043 S13: 0.3680 REMARK 3 S21: 0.2320 S22: -0.0446 S23: 0.2730 REMARK 3 S31: -0.2732 S32: -0.4055 S33: -0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ODO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7-3.0M SODIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.71000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.85500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 390 REMARK 465 ILE A 391 REMARK 465 GLN A 392 REMARK 465 THR A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 PRO A 396 REMARK 465 GLY A 397 REMARK 465 TRP A 398 REMARK 465 GLU A 399 REMARK 465 GLU A 400 REMARK 465 LEU A 401 REMARK 465 VAL A 402 REMARK 465 PRO A 403 REMARK 465 PRO A 404 REMARK 465 ASP A 405 REMARK 465 THR A 406 REMARK 465 LEU A 407 REMARK 465 HIS A 408 REMARK 465 SER A 409 REMARK 465 LEU A 410 REMARK 465 GLY A 486 REMARK 465 TYR A 487 REMARK 465 THR A 693 REMARK 465 LEU A 694 REMARK 465 THR A 695 REMARK 465 PRO A 696 REMARK 465 THR A 697 REMARK 465 PRO A 698 REMARK 465 ASP A 699 REMARK 465 GLY A 700 REMARK 465 LYS A 701 REMARK 465 ALA A 766 REMARK 465 GLY B 390 REMARK 465 ILE B 391 REMARK 465 GLN B 392 REMARK 465 THR B 393 REMARK 465 SER B 394 REMARK 465 PRO B 395 REMARK 465 PRO B 396 REMARK 465 GLY B 397 REMARK 465 TRP B 398 REMARK 465 GLU B 399 REMARK 465 GLU B 400 REMARK 465 LEU B 401 REMARK 465 VAL B 402 REMARK 465 PRO B 403 REMARK 465 PRO B 404 REMARK 465 ASP B 405 REMARK 465 THR B 406 REMARK 465 LEU B 407 REMARK 465 HIS B 408 REMARK 465 SER B 409 REMARK 465 LEU B 410 REMARK 465 GLY B 486 REMARK 465 TYR B 487 REMARK 465 ARG B 692 REMARK 465 THR B 693 REMARK 465 LEU B 694 REMARK 465 THR B 695 REMARK 465 PRO B 696 REMARK 465 THR B 697 REMARK 465 PRO B 698 REMARK 465 ASP B 699 REMARK 465 GLY B 700 REMARK 465 LYS B 701 REMARK 465 ALA B 766 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 702 CB OG1 CG2 REMARK 470 THR B 702 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 516 CB CYS A 516 SG -0.097 REMARK 500 GLU B 469 CG GLU B 469 CD 0.102 REMARK 500 GLU B 524 CG GLU B 524 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 450 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 SER A 463 C - N - CA ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG A 499 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 564 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 564 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 680 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU B 457 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 499 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 499 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 MET B 562 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 MET B 714 CG - SD - CE ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 442 -67.64 -120.87 REMARK 500 LEU A 450 57.98 28.43 REMARK 500 GLU A 491 107.18 78.35 REMARK 500 ILE A 492 -20.97 -140.98 REMARK 500 PHE A 638 50.64 -92.35 REMARK 500 ASN A 640 -12.65 87.71 REMARK 500 ASP A 673 10.11 -144.85 REMARK 500 ASP A 682 -123.82 43.70 REMARK 500 HIS A 690 119.97 -29.18 REMARK 500 SER A 691 99.13 -160.03 REMARK 500 ASP A 721 98.56 -160.36 REMARK 500 ALA A 735 71.96 51.80 REMARK 500 GLN A 736 69.55 97.33 REMARK 500 PHE B 442 -66.76 -121.17 REMARK 500 ILE B 489 -77.07 -85.40 REMARK 500 GLU B 490 115.46 76.32 REMARK 500 GLU B 491 101.66 69.39 REMARK 500 ILE B 492 -13.49 -141.94 REMARK 500 ARG B 551 -2.14 65.30 REMARK 500 PHE B 638 42.60 -97.08 REMARK 500 ASN B 640 -21.28 88.96 REMARK 500 ASP B 682 -127.62 50.46 REMARK 500 MET B 703 -25.30 -141.92 REMARK 500 ASP B 721 94.38 -164.89 REMARK 500 GLN B 733 -21.58 82.77 REMARK 500 ALA B 735 80.84 32.82 REMARK 500 GLN B 736 66.07 104.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ODO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF P115-RHOGEF REMARK 900 RELATED ID: 3ODW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LINKER-DH/PH DOMAINS OF P115-RHOGEF REMARK 900 RELATED ID: 3ODX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINALLY TRUNCATED LINKER-DH/PH REMARK 900 DOMAINS OF P115-RHOGEF REMARK 900 RELATED ID: 1X86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF LEUKEMIA-ASSOCIATED REMARK 900 RHOGEF IN COMPLEX WITH RHOA REMARK 900 RELATED ID: 1TXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF LEUKEMIA-ASSOCIATED RHOGEF REMARK 900 RELATED ID: 1XCG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF PDZ-RHOGEF IN COMPLEX REMARK 900 WITH RHOA DBREF 3P6A A 395 766 UNP Q92888 ARHG1_HUMAN 395 766 DBREF 3P6A B 395 766 UNP Q92888 ARHG1_HUMAN 395 766 SEQADV 3P6A GLY A 390 UNP Q92888 EXPRESSION TAG SEQADV 3P6A ILE A 391 UNP Q92888 EXPRESSION TAG SEQADV 3P6A GLN A 392 UNP Q92888 EXPRESSION TAG SEQADV 3P6A THR A 393 UNP Q92888 EXPRESSION TAG SEQADV 3P6A SER A 394 UNP Q92888 EXPRESSION TAG SEQADV 3P6A GLU A 399 UNP Q92888 ARG 399 ENGINEERED MUTATION SEQADV 3P6A GLY B 390 UNP Q92888 EXPRESSION TAG SEQADV 3P6A ILE B 391 UNP Q92888 EXPRESSION TAG SEQADV 3P6A GLN B 392 UNP Q92888 EXPRESSION TAG SEQADV 3P6A THR B 393 UNP Q92888 EXPRESSION TAG SEQADV 3P6A SER B 394 UNP Q92888 EXPRESSION TAG SEQADV 3P6A GLU B 399 UNP Q92888 ARG 399 ENGINEERED MUTATION SEQRES 1 A 377 GLY ILE GLN THR SER PRO PRO GLY TRP GLU GLU LEU VAL SEQRES 2 A 377 PRO PRO ASP THR LEU HIS SER LEU PRO LYS SER GLN VAL SEQRES 3 A 377 LYS ARG GLN GLU VAL ILE SER GLU LEU LEU VAL THR GLU SEQRES 4 A 377 ALA ALA HIS VAL ARG MET LEU ARG VAL LEU HIS ASP LEU SEQRES 5 A 377 PHE PHE GLN PRO MET ALA GLU CYS LEU PHE PHE PRO LEU SEQRES 6 A 377 GLU GLU LEU GLN ASN ILE PHE PRO SER LEU ASP GLU LEU SEQRES 7 A 377 ILE GLU VAL HIS SER LEU PHE LEU ASP ARG LEU MET LYS SEQRES 8 A 377 ARG ARG GLN GLU SER GLY TYR LEU ILE GLU GLU ILE GLY SEQRES 9 A 377 ASP VAL LEU LEU ALA ARG PHE ASP GLY ALA GLU GLY SER SEQRES 10 A 377 TRP PHE GLN LYS ILE SER SER ARG PHE CYS SER ARG GLN SEQRES 11 A 377 SER PHE ALA LEU GLU GLN LEU LYS ALA LYS GLN ARG LYS SEQRES 12 A 377 ASP PRO ARG PHE CYS ALA PHE VAL GLN GLU ALA GLU SER SEQRES 13 A 377 ARG PRO ARG CYS ARG ARG LEU GLN LEU LYS ASP MET ILE SEQRES 14 A 377 PRO THR GLU MET GLN ARG LEU THR LYS TYR PRO LEU LEU SEQRES 15 A 377 LEU GLN SER ILE GLY GLN ASN THR GLU GLU PRO THR GLU SEQRES 16 A 377 ARG GLU LYS VAL GLU LEU ALA ALA GLU CYS CYS ARG GLU SEQRES 17 A 377 ILE LEU HIS HIS VAL ASN GLN ALA VAL ARG ASP MET GLU SEQRES 18 A 377 ASP LEU LEU ARG LEU LYS ASP TYR GLN ARG ARG LEU ASP SEQRES 19 A 377 LEU SER HIS LEU ARG GLN SER SER ASP PRO MET LEU SER SEQRES 20 A 377 GLU PHE LYS ASN LEU ASP ILE THR LYS LYS LYS LEU VAL SEQRES 21 A 377 HIS GLU GLY PRO LEU THR TRP ARG VAL THR LYS ASP LYS SEQRES 22 A 377 ALA VAL GLU VAL HIS VAL LEU LEU LEU ASP ASP LEU LEU SEQRES 23 A 377 LEU LEU LEU GLN ARG GLN ASP GLU ARG LEU LEU LEU LYS SEQRES 24 A 377 SER HIS SER ARG THR LEU THR PRO THR PRO ASP GLY LYS SEQRES 25 A 377 THR MET LEU ARG PRO VAL LEU ARG LEU THR SER ALA MET SEQRES 26 A 377 THR ARG GLU VAL ALA THR ASP HIS LYS ALA PHE TYR VAL SEQRES 27 A 377 LEU PHE THR TRP ASP GLN GLU ALA GLN ILE TYR GLU LEU SEQRES 28 A 377 VAL ALA GLN THR VAL SER GLU ARG LYS ASN TRP CYS ALA SEQRES 29 A 377 LEU ILE THR GLU THR ALA GLY SER LEU LYS VAL PRO ALA SEQRES 1 B 377 GLY ILE GLN THR SER PRO PRO GLY TRP GLU GLU LEU VAL SEQRES 2 B 377 PRO PRO ASP THR LEU HIS SER LEU PRO LYS SER GLN VAL SEQRES 3 B 377 LYS ARG GLN GLU VAL ILE SER GLU LEU LEU VAL THR GLU SEQRES 4 B 377 ALA ALA HIS VAL ARG MET LEU ARG VAL LEU HIS ASP LEU SEQRES 5 B 377 PHE PHE GLN PRO MET ALA GLU CYS LEU PHE PHE PRO LEU SEQRES 6 B 377 GLU GLU LEU GLN ASN ILE PHE PRO SER LEU ASP GLU LEU SEQRES 7 B 377 ILE GLU VAL HIS SER LEU PHE LEU ASP ARG LEU MET LYS SEQRES 8 B 377 ARG ARG GLN GLU SER GLY TYR LEU ILE GLU GLU ILE GLY SEQRES 9 B 377 ASP VAL LEU LEU ALA ARG PHE ASP GLY ALA GLU GLY SER SEQRES 10 B 377 TRP PHE GLN LYS ILE SER SER ARG PHE CYS SER ARG GLN SEQRES 11 B 377 SER PHE ALA LEU GLU GLN LEU LYS ALA LYS GLN ARG LYS SEQRES 12 B 377 ASP PRO ARG PHE CYS ALA PHE VAL GLN GLU ALA GLU SER SEQRES 13 B 377 ARG PRO ARG CYS ARG ARG LEU GLN LEU LYS ASP MET ILE SEQRES 14 B 377 PRO THR GLU MET GLN ARG LEU THR LYS TYR PRO LEU LEU SEQRES 15 B 377 LEU GLN SER ILE GLY GLN ASN THR GLU GLU PRO THR GLU SEQRES 16 B 377 ARG GLU LYS VAL GLU LEU ALA ALA GLU CYS CYS ARG GLU SEQRES 17 B 377 ILE LEU HIS HIS VAL ASN GLN ALA VAL ARG ASP MET GLU SEQRES 18 B 377 ASP LEU LEU ARG LEU LYS ASP TYR GLN ARG ARG LEU ASP SEQRES 19 B 377 LEU SER HIS LEU ARG GLN SER SER ASP PRO MET LEU SER SEQRES 20 B 377 GLU PHE LYS ASN LEU ASP ILE THR LYS LYS LYS LEU VAL SEQRES 21 B 377 HIS GLU GLY PRO LEU THR TRP ARG VAL THR LYS ASP LYS SEQRES 22 B 377 ALA VAL GLU VAL HIS VAL LEU LEU LEU ASP ASP LEU LEU SEQRES 23 B 377 LEU LEU LEU GLN ARG GLN ASP GLU ARG LEU LEU LEU LYS SEQRES 24 B 377 SER HIS SER ARG THR LEU THR PRO THR PRO ASP GLY LYS SEQRES 25 B 377 THR MET LEU ARG PRO VAL LEU ARG LEU THR SER ALA MET SEQRES 26 B 377 THR ARG GLU VAL ALA THR ASP HIS LYS ALA PHE TYR VAL SEQRES 27 B 377 LEU PHE THR TRP ASP GLN GLU ALA GLN ILE TYR GLU LEU SEQRES 28 B 377 VAL ALA GLN THR VAL SER GLU ARG LYS ASN TRP CYS ALA SEQRES 29 B 377 LEU ILE THR GLU THR ALA GLY SER LEU LYS VAL PRO ALA HELIX 1 1 LYS A 412 PHE A 442 1 31 HELIX 2 2 PHE A 442 LEU A 450 1 9 HELIX 3 3 PRO A 453 PHE A 461 1 9 HELIX 4 4 SER A 463 SER A 485 1 23 HELIX 5 5 ILE A 492 ASP A 501 1 10 HELIX 6 6 ASP A 501 ARG A 518 1 18 HELIX 7 7 ARG A 518 ASP A 533 1 16 HELIX 8 8 ASP A 533 SER A 545 1 13 HELIX 9 9 ARG A 546 ARG A 550 5 5 HELIX 10 10 GLN A 553 ILE A 558 1 6 HELIX 11 11 PRO A 559 ASN A 578 1 20 HELIX 12 12 GLU A 581 ARG A 621 1 41 HELIX 13 13 LEU A 624 SER A 630 1 7 HELIX 14 14 ASP A 632 SER A 636 5 5 HELIX 15 15 THR A 744 SER A 761 1 18 HELIX 16 16 PRO B 411 PHE B 442 1 32 HELIX 17 17 PHE B 442 LEU B 450 1 9 HELIX 18 18 PRO B 453 PHE B 461 1 9 HELIX 19 19 SER B 463 SER B 485 1 23 HELIX 20 20 ILE B 492 ASP B 501 1 10 HELIX 21 21 ASP B 501 ARG B 518 1 18 HELIX 22 22 ARG B 518 ASP B 533 1 16 HELIX 23 23 ASP B 533 SER B 545 1 13 HELIX 24 24 ARG B 546 ARG B 550 5 5 HELIX 25 25 GLN B 553 ILE B 558 1 6 HELIX 26 26 PRO B 559 GLN B 577 1 19 HELIX 27 27 GLU B 581 ARG B 621 1 41 HELIX 28 28 LEU B 624 SER B 630 1 7 HELIX 29 29 ASP B 632 LYS B 639 5 8 HELIX 30 30 THR B 744 LEU B 762 1 19 SHEET 1 A 4 LEU A 622 ASP A 623 0 SHEET 2 A 4 ARG A 684 LEU A 686 1 O LEU A 685 N ASP A 623 SHEET 3 A 4 LEU A 674 GLN A 681 -1 N GLN A 681 O ARG A 684 SHEET 4 A 4 VAL A 707 ARG A 709 -1 O LEU A 708 N LEU A 675 SHEET 1 B 8 LEU A 622 ASP A 623 0 SHEET 2 B 8 ARG A 684 LEU A 686 1 O LEU A 685 N ASP A 623 SHEET 3 B 8 LEU A 674 GLN A 681 -1 N GLN A 681 O ARG A 684 SHEET 4 B 8 ALA A 663 LEU A 671 -1 N HIS A 667 O LEU A 678 SHEET 5 B 8 LEU A 648 ARG A 657 -1 N TRP A 656 O VAL A 664 SHEET 6 B 8 ILE A 737 VAL A 741 -1 O VAL A 741 N THR A 655 SHEET 7 B 8 ALA A 724 PHE A 729 -1 N PHE A 725 O LEU A 740 SHEET 8 B 8 ALA A 713 GLU A 717 -1 N ARG A 716 O TYR A 726 SHEET 1 C 4 LEU B 622 ASP B 623 0 SHEET 2 C 4 ARG B 684 LEU B 686 1 O LEU B 685 N ASP B 623 SHEET 3 C 4 LEU B 674 GLN B 681 -1 N GLN B 681 O ARG B 684 SHEET 4 C 4 VAL B 707 ARG B 709 -1 O LEU B 708 N LEU B 675 SHEET 1 D 8 LEU B 622 ASP B 623 0 SHEET 2 D 8 ARG B 684 LEU B 686 1 O LEU B 685 N ASP B 623 SHEET 3 D 8 LEU B 674 GLN B 681 -1 N GLN B 681 O ARG B 684 SHEET 4 D 8 LYS B 662 LEU B 671 -1 N HIS B 667 O LEU B 678 SHEET 5 D 8 LEU B 648 THR B 659 -1 N TRP B 656 O VAL B 664 SHEET 6 D 8 ILE B 737 VAL B 741 -1 O GLU B 739 N ARG B 657 SHEET 7 D 8 ALA B 724 PHE B 729 -1 N PHE B 725 O LEU B 740 SHEET 8 D 8 ALA B 713 GLU B 717 -1 N MET B 714 O LEU B 728 CISPEP 1 PRO A 411 LYS A 412 0 -4.99 CISPEP 2 LYS A 639 ASN A 640 0 2.64 CISPEP 3 ALA A 735 GLN A 736 0 11.69 CISPEP 4 LYS B 639 ASN B 640 0 13.18 CISPEP 5 HIS B 690 SER B 691 0 11.41 CISPEP 6 ALA B 735 GLN B 736 0 8.61 CRYST1 110.823 110.823 98.565 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009023 0.005210 0.000000 0.00000 SCALE2 0.000000 0.010419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010146 0.00000