HEADER SUGAR BINDING PROTEIN 11-OCT-10 3P6B TITLE THE CRYSTAL STRUCTURE OF CELK CBM4 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE 1,4-BETA-CELLOBIOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-210; COMPND 5 EC: 3.2.1.91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 GENE: CELK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-SANDWICH, CARBOHYDRATE BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.M.ALAHUHTA,Y.LUO,V.V.LUNIN REVDAT 3 06-SEP-23 3P6B 1 REMARK SEQADV LINK REVDAT 2 27-MAR-13 3P6B 1 REMARK REVDAT 1 24-AUG-11 3P6B 0 JRNL AUTH M.ALAHUHTA,Y.LUO,S.Y.DING,M.E.HIMMEL,V.V.LUNIN JRNL TITL STRUCTURE OF CBM4 FROM CLOSTRIDIUM THERMOCELLUM CELLULASE K. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 527 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21543854 JRNL DOI 10.1107/S1744309111003307 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2107 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3203 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2124 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4368 ; 1.875 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5150 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 7.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.318 ;24.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;13.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.255 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3582 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1885 ; 1.026 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 754 ; 0.307 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3051 ; 1.717 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 2.875 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 4.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : HELIOS MIRRORS REMARK 200 OPTICS : HELIOS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.95 REMARK 200 R MERGE FOR SHELL (I) : 0.53960 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3K4Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.5 M TRIS, REMARK 280 12% GLYCEROL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.21800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.97450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.97450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.10900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.97450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.97450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.32700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.97450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.97450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.10900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.97450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.97450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 204.32700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 136.21800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY OF THIS MODULE REMARK 300 PROTEIN IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 65.94900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 VAL B 14 REMARK 465 PRO B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 19 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 20 CG SD CE REMARK 470 LYS A 25 CD CE NZ REMARK 470 PRO A 204 CB CG CD REMARK 470 HIS B 19 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 20 CG SD CE REMARK 470 LYS B 25 CD CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 152 O HOH B 217 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 163 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 VAL B 188 CB - CA - C ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 42 9.32 52.71 REMARK 500 ARG A 95 -158.07 -91.82 REMARK 500 PHE A 109 147.00 -174.68 REMARK 500 ASN A 135 27.05 -158.71 REMARK 500 ARG B 40 -34.59 -131.28 REMARK 500 PHE B 42 12.99 57.53 REMARK 500 SER B 56 46.79 39.38 REMARK 500 ASN B 135 33.13 -166.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 41 O REMARK 620 2 ASP A 43 OD1 73.6 REMARK 620 3 ASN A 73 OD1 150.2 77.4 REMARK 620 4 LYS A 74 O 83.1 82.5 86.6 REMARK 620 5 ASP A 186 OD1 76.3 149.9 132.6 95.1 REMARK 620 6 ASP A 186 OD2 127.5 155.2 79.6 87.1 53.3 REMARK 620 7 HOH A 248 O 101.6 93.7 86.7 172.9 91.2 94.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 41 O REMARK 620 2 ASP B 43 OD1 77.0 REMARK 620 3 ASN B 73 OD1 155.7 78.7 REMARK 620 4 LYS B 74 O 82.0 84.0 97.7 REMARK 620 5 ASP B 186 OD1 75.5 152.4 128.6 94.4 REMARK 620 6 ASP B 186 OD2 125.2 155.9 79.0 89.7 51.2 REMARK 620 7 HOH B 236 O 103.3 95.3 76.8 174.4 88.8 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K4Z RELATED DB: PDB REMARK 900 CBHA CBM4 MODULE DBREF 3P6B A 21 204 UNP P0C2S1 CELK_CLOTM 27 210 DBREF 3P6B B 21 204 UNP P0C2S1 CELK_CLOTM 27 210 SEQADV 3P6B MET A 0 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY A 1 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER A 2 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER A 3 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 4 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 5 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 6 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 7 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 8 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 9 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER A 10 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER A 11 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY A 12 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B LEU A 13 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B VAL A 14 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B PRO A 15 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B ARG A 16 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY A 17 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER A 18 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS A 19 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B MET A 20 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B MET B 0 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY B 1 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER B 2 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER B 3 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 4 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 5 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 6 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 7 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 8 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 9 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER B 10 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER B 11 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY B 12 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B LEU B 13 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B VAL B 14 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B PRO B 15 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B ARG B 16 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B GLY B 17 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B SER B 18 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B HIS B 19 UNP P0C2S1 EXPRESSION TAG SEQADV 3P6B MET B 20 UNP P0C2S1 EXPRESSION TAG SEQRES 1 A 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 205 LEU VAL PRO ARG GLY SER HIS MET ALA LEU GLU ASP LYS SEQRES 3 A 205 SER SER LYS LEU PRO ASP TYR LYS ASN ASP LEU LEU TYR SEQRES 4 A 205 GLU ARG THR PHE ASP GLU GLY LEU CYS PHE PRO TRP HIS SEQRES 5 A 205 THR CYS GLU ASP SER GLY GLY LYS CYS ASP PHE ALA VAL SEQRES 6 A 205 VAL ASP VAL PRO GLY GLU PRO GLY ASN LYS ALA PHE ARG SEQRES 7 A 205 LEU THR VAL ILE ASP LYS GLY GLN ASN LYS TRP SER VAL SEQRES 8 A 205 GLN MET ARG HIS ARG GLY ILE THR LEU GLU GLN GLY HIS SEQRES 9 A 205 THR TYR THR VAL ARG PHE THR ILE TRP SER ASP LYS SER SEQRES 10 A 205 CYS ARG VAL TYR ALA LYS ILE GLY GLN MET GLY GLU PRO SEQRES 11 A 205 TYR THR GLU TYR TRP ASN ASN ASN TRP ASN PRO PHE ASN SEQRES 12 A 205 LEU THR PRO GLY GLN LYS LEU THR VAL GLU GLN ASN PHE SEQRES 13 A 205 THR MET ASN TYR PRO THR ASP ASP THR CYS GLU PHE THR SEQRES 14 A 205 PHE HIS LEU GLY GLY GLU LEU ALA ALA GLY THR PRO TYR SEQRES 15 A 205 TYR VAL TYR LEU ASP ASP VAL SER LEU TYR ASP PRO ARG SEQRES 16 A 205 PHE VAL LYS PRO VAL GLU TYR VAL LEU PRO SEQRES 1 B 205 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 205 LEU VAL PRO ARG GLY SER HIS MET ALA LEU GLU ASP LYS SEQRES 3 B 205 SER SER LYS LEU PRO ASP TYR LYS ASN ASP LEU LEU TYR SEQRES 4 B 205 GLU ARG THR PHE ASP GLU GLY LEU CYS PHE PRO TRP HIS SEQRES 5 B 205 THR CYS GLU ASP SER GLY GLY LYS CYS ASP PHE ALA VAL SEQRES 6 B 205 VAL ASP VAL PRO GLY GLU PRO GLY ASN LYS ALA PHE ARG SEQRES 7 B 205 LEU THR VAL ILE ASP LYS GLY GLN ASN LYS TRP SER VAL SEQRES 8 B 205 GLN MET ARG HIS ARG GLY ILE THR LEU GLU GLN GLY HIS SEQRES 9 B 205 THR TYR THR VAL ARG PHE THR ILE TRP SER ASP LYS SER SEQRES 10 B 205 CYS ARG VAL TYR ALA LYS ILE GLY GLN MET GLY GLU PRO SEQRES 11 B 205 TYR THR GLU TYR TRP ASN ASN ASN TRP ASN PRO PHE ASN SEQRES 12 B 205 LEU THR PRO GLY GLN LYS LEU THR VAL GLU GLN ASN PHE SEQRES 13 B 205 THR MET ASN TYR PRO THR ASP ASP THR CYS GLU PHE THR SEQRES 14 B 205 PHE HIS LEU GLY GLY GLU LEU ALA ALA GLY THR PRO TYR SEQRES 15 B 205 TYR VAL TYR LEU ASP ASP VAL SER LEU TYR ASP PRO ARG SEQRES 16 B 205 PHE VAL LYS PRO VAL GLU TYR VAL LEU PRO HET CA A 205 1 HET ACT A 206 4 HET ACT A 207 4 HET ACT A 208 4 HET GOL A 209 6 HET SO4 A 210 5 HET SO4 A 211 5 HET SO4 A 212 5 HET SO4 A 213 5 HET CA B 205 1 HET GOL B 206 6 HET SO4 B 207 5 HET SO4 B 208 5 HET SO4 B 209 5 HET SO4 B 210 5 HET SO4 B 211 5 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 SO4 9(O4 S 2-) FORMUL 19 HOH *346(H2 O) HELIX 1 1 ASP A 31 ASP A 35 5 5 HELIX 2 2 ASN A 86 TRP A 88 5 3 HELIX 3 3 GLY A 172 ALA A 176 5 5 HELIX 4 4 ASP B 31 ASP B 35 5 5 HELIX 5 5 ASN B 86 TRP B 88 5 3 HELIX 6 6 GLY B 172 ALA B 176 5 5 SHEET 1 A 5 HIS A 51 GLU A 54 0 SHEET 2 A 5 VAL A 90 LEU A 99 -1 O ARG A 93 N HIS A 51 SHEET 3 A 5 ASP A 162 HIS A 170 -1 O PHE A 167 N HIS A 94 SHEET 4 A 5 CYS A 117 GLN A 125 -1 N TYR A 120 O HIS A 170 SHEET 5 A 5 GLU A 132 TRP A 134 -1 O TRP A 134 N ILE A 123 SHEET 1 B 5 HIS A 51 GLU A 54 0 SHEET 2 B 5 VAL A 90 LEU A 99 -1 O ARG A 93 N HIS A 51 SHEET 3 B 5 ASP A 162 HIS A 170 -1 O PHE A 167 N HIS A 94 SHEET 4 B 5 CYS A 117 GLN A 125 -1 N TYR A 120 O HIS A 170 SHEET 5 B 5 PHE A 141 LEU A 143 -1 O LEU A 143 N CYS A 117 SHEET 1 C10 GLY A 58 ASP A 66 0 SHEET 2 C10 LYS A 74 LYS A 83 -1 O ALA A 75 N VAL A 65 SHEET 3 C10 TYR A 181 TYR A 191 -1 O VAL A 183 N LEU A 78 SHEET 4 C10 THR A 104 SER A 113 -1 N TRP A 112 O TYR A 184 SHEET 5 C10 GLN A 147 THR A 156 -1 O GLN A 153 N VAL A 107 SHEET 6 C10 GLN B 147 THR B 156 -1 O THR B 150 N LYS A 148 SHEET 7 C10 THR B 104 SER B 113 -1 N TYR B 105 O PHE B 155 SHEET 8 C10 TYR B 181 TYR B 191 -1 O TYR B 184 N TRP B 112 SHEET 9 C10 LYS B 74 LYS B 83 -1 N LEU B 78 O VAL B 183 SHEET 10 C10 GLY B 58 ASP B 66 -1 N ALA B 63 O ARG B 77 SHEET 1 D 5 HIS B 51 GLU B 54 0 SHEET 2 D 5 VAL B 90 LEU B 99 -1 O ARG B 93 N HIS B 51 SHEET 3 D 5 ASP B 162 HIS B 170 -1 O PHE B 167 N HIS B 94 SHEET 4 D 5 CYS B 117 GLN B 125 -1 N TYR B 120 O HIS B 170 SHEET 5 D 5 GLU B 132 TRP B 134 -1 O TRP B 134 N ILE B 123 SHEET 1 E 5 HIS B 51 GLU B 54 0 SHEET 2 E 5 VAL B 90 LEU B 99 -1 O ARG B 93 N HIS B 51 SHEET 3 E 5 ASP B 162 HIS B 170 -1 O PHE B 167 N HIS B 94 SHEET 4 E 5 CYS B 117 GLN B 125 -1 N TYR B 120 O HIS B 170 SHEET 5 E 5 PHE B 141 LEU B 143 -1 O PHE B 141 N VAL B 119 LINK O THR A 41 CA CA A 205 1555 1555 2.27 LINK OD1 ASP A 43 CA CA A 205 1555 1555 2.56 LINK OD1 ASN A 73 CA CA A 205 1555 1555 2.33 LINK O LYS A 74 CA CA A 205 1555 1555 2.33 LINK OD1 ASP A 186 CA CA A 205 1555 1555 2.41 LINK OD2 ASP A 186 CA CA A 205 1555 1555 2.44 LINK CA CA A 205 O HOH A 248 1555 1555 2.45 LINK O THR B 41 CA CA B 205 1555 1555 2.27 LINK OD1 ASP B 43 CA CA B 205 1555 1555 2.54 LINK OD1 ASN B 73 CA CA B 205 1555 1555 2.22 LINK O LYS B 74 CA CA B 205 1555 1555 2.23 LINK OD1 ASP B 186 CA CA B 205 1555 1555 2.51 LINK OD2 ASP B 186 CA CA B 205 1555 1555 2.54 LINK CA CA B 205 O HOH B 236 1555 1555 2.40 CISPEP 1 PHE A 48 PRO A 49 0 2.66 CISPEP 2 GLU A 128 PRO A 129 0 6.21 CISPEP 3 THR A 179 PRO A 180 0 5.55 CISPEP 4 LEU A 203 PRO A 204 0 4.98 CISPEP 5 PHE B 48 PRO B 49 0 2.49 CISPEP 6 GLU B 128 PRO B 129 0 1.75 CISPEP 7 THR B 179 PRO B 180 0 -3.00 SITE 1 AC1 6 THR A 41 ASP A 43 ASN A 73 LYS A 74 SITE 2 AC1 6 ASP A 186 HOH A 248 SITE 1 AC2 2 SER A 27 HOH A 244 SITE 1 AC3 4 PRO A 129 THR A 131 THR B 131 TYR B 159 SITE 1 AC4 2 ARG A 194 HOH A 449 SITE 1 AC5 5 TRP A 88 LYS A 122 TYR A 130 HIS A 170 SITE 2 AC5 5 HOH A 300 SITE 1 AC6 3 LYS A 87 ARG A 118 GLU A 174 SITE 1 AC7 4 ASN A 142 HOH A 263 ASN B 142 GOL B 206 SITE 1 AC8 1 ARG A 77 SITE 1 AC9 6 LYS A 115 ALA A 177 GLY A 178 HOH A 387 SITE 2 AC9 6 LYS B 115 SO4 B 209 SITE 1 BC1 6 THR B 41 ASP B 43 ASN B 73 LYS B 74 SITE 2 BC1 6 ASP B 186 HOH B 236 SITE 1 BC2 8 THR A 144 GLN A 147 SO4 A 211 ASN B 136 SITE 2 BC2 8 PRO B 140 PHE B 141 ASN B 142 HOH B 445 SITE 1 BC3 3 LYS B 87 ARG B 118 GLU B 174 SITE 1 BC4 1 ARG B 77 SITE 1 BC5 6 LYS A 115 SO4 A 213 LYS B 115 ALA B 177 SITE 2 BC5 6 GLY B 178 HOH B 396 SITE 1 BC6 3 ARG B 194 HOH B 275 HOH B 428 SITE 1 BC7 2 ARG B 93 ARG B 95 CRYST1 65.949 65.949 272.436 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003671 0.00000