data_3P8D # _entry.id 3P8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3P8D pdb_00003p8d 10.2210/pdb3p8d/pdb RCSB RCSB062084 ? ? WWPDB D_1000062084 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-08-15 4 'Structure model' 1 3 2012-09-26 5 'Structure model' 1 4 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_entry_details 5 5 'Structure model' pdbx_modification_feature 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3P8D _pdbx_database_status.recvd_initial_deposition_date 2010-10-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cui, G.' 1 'Lee, J.' 2 'Thompson, J.R.' 3 'Botuyan, M.V.' 4 'Mer, G.' 5 # _citation.id primary _citation.title 'PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 916 _citation.page_last 924 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22864287 _citation.pdbx_database_id_DOI 10.1038/nsmb.2353 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cui, G.' 1 ? primary 'Park, S.' 2 ? primary 'Badeaux, A.I.' 3 ? primary 'Kim, D.' 4 ? primary 'Lee, J.' 5 ? primary 'Thompson, J.R.' 6 ? primary 'Yan, F.' 7 ? primary 'Kaneko, S.' 8 ? primary 'Yuan, Z.' 9 ? primary 'Botuyan, M.V.' 10 ? primary 'Bedford, M.T.' 11 ? primary 'Cheng, J.Q.' 12 ? primary 'Mer, G.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Medulloblastoma antigen MU-MB-50.72' 7589.581 2 ? ? 'UNP residues 84-147' ? 2 water nat water 18.015 147 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PHD FINGER PROTEIN 20' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GHMSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNAR _entity_poly.pdbx_seq_one_letter_code_can GHMSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNAR _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 SER n 1 5 SER n 1 6 GLU n 1 7 PHE n 1 8 GLN n 1 9 ILE n 1 10 ASN n 1 11 GLU n 1 12 GLN n 1 13 VAL n 1 14 LEU n 1 15 ALA n 1 16 CYS n 1 17 TRP n 1 18 SER n 1 19 ASP n 1 20 CYS n 1 21 ARG n 1 22 PHE n 1 23 TYR n 1 24 PRO n 1 25 ALA n 1 26 LYS n 1 27 VAL n 1 28 THR n 1 29 ALA n 1 30 VAL n 1 31 ASN n 1 32 LYS n 1 33 ASP n 1 34 GLY n 1 35 THR n 1 36 TYR n 1 37 THR n 1 38 VAL n 1 39 LYS n 1 40 PHE n 1 41 TYR n 1 42 ASP n 1 43 GLY n 1 44 VAL n 1 45 VAL n 1 46 GLN n 1 47 THR n 1 48 VAL n 1 49 LYS n 1 50 HIS n 1 51 ILE n 1 52 HIS n 1 53 VAL n 1 54 LYS n 1 55 ALA n 1 56 PHE n 1 57 SER n 1 58 LYS n 1 59 ASP n 1 60 GLN n 1 61 ASN n 1 62 ILE n 1 63 VAL n 1 64 GLY n 1 65 ASN n 1 66 ALA n 1 67 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 81 ? ? ? A . n A 1 2 HIS 2 82 ? ? ? A . n A 1 3 MET 3 83 ? ? ? A . n A 1 4 SER 4 84 ? ? ? A . n A 1 5 SER 5 85 85 SER SER A . n A 1 6 GLU 6 86 86 GLU GLU A . n A 1 7 PHE 7 87 87 PHE PHE A . n A 1 8 GLN 8 88 88 GLN GLN A . n A 1 9 ILE 9 89 89 ILE ILE A . n A 1 10 ASN 10 90 90 ASN ASN A . n A 1 11 GLU 11 91 91 GLU GLU A . n A 1 12 GLN 12 92 92 GLN GLN A . n A 1 13 VAL 13 93 93 VAL VAL A . n A 1 14 LEU 14 94 94 LEU LEU A . n A 1 15 ALA 15 95 95 ALA ALA A . n A 1 16 CYS 16 96 96 CYS CYS A . n A 1 17 TRP 17 97 97 TRP TRP A . n A 1 18 SER 18 98 98 SER SER A . n A 1 19 ASP 19 99 99 ASP ASP A . n A 1 20 CYS 20 100 100 CYS CYS A . n A 1 21 ARG 21 101 101 ARG ARG A . n A 1 22 PHE 22 102 102 PHE PHE A . n A 1 23 TYR 23 103 103 TYR TYR A . n A 1 24 PRO 24 104 104 PRO PRO A . n A 1 25 ALA 25 105 105 ALA ALA A . n A 1 26 LYS 26 106 106 LYS LYS A . n A 1 27 VAL 27 107 107 VAL VAL A . n A 1 28 THR 28 108 108 THR THR A . n A 1 29 ALA 29 109 109 ALA ALA A . n A 1 30 VAL 30 110 110 VAL VAL A . n A 1 31 ASN 31 111 111 ASN ASN A . n A 1 32 LYS 32 112 112 LYS LYS A . n A 1 33 ASP 33 113 113 ASP ASP A . n A 1 34 GLY 34 114 114 GLY GLY A . n A 1 35 THR 35 115 115 THR THR A . n A 1 36 TYR 36 116 116 TYR TYR A . n A 1 37 THR 37 117 117 THR THR A . n A 1 38 VAL 38 118 118 VAL VAL A . n A 1 39 LYS 39 119 119 LYS LYS A . n A 1 40 PHE 40 120 120 PHE PHE A . n A 1 41 TYR 41 121 121 TYR TYR A . n A 1 42 ASP 42 122 122 ASP ASP A . n A 1 43 GLY 43 123 123 GLY GLY A . n A 1 44 VAL 44 124 124 VAL VAL A . n A 1 45 VAL 45 125 125 VAL VAL A . n A 1 46 GLN 46 126 126 GLN GLN A . n A 1 47 THR 47 127 127 THR THR A . n A 1 48 VAL 48 128 128 VAL VAL A . n A 1 49 LYS 49 129 129 LYS LYS A . n A 1 50 HIS 50 130 130 HIS HIS A . n A 1 51 ILE 51 131 131 ILE ILE A . n A 1 52 HIS 52 132 132 HIS HIS A . n A 1 53 VAL 53 133 133 VAL VAL A . n A 1 54 LYS 54 134 134 LYS LYS A . n A 1 55 ALA 55 135 135 ALA ALA A . n A 1 56 PHE 56 136 136 PHE PHE A . n A 1 57 SER 57 137 137 SER SER A . n A 1 58 LYS 58 138 ? ? ? A . n A 1 59 ASP 59 139 ? ? ? A . n A 1 60 GLN 60 140 ? ? ? A . n A 1 61 ASN 61 141 ? ? ? A . n A 1 62 ILE 62 142 ? ? ? A . n A 1 63 VAL 63 143 ? ? ? A . n A 1 64 GLY 64 144 ? ? ? A . n A 1 65 ASN 65 145 ? ? ? A . n A 1 66 ALA 66 146 ? ? ? A . n A 1 67 ARG 67 147 ? ? ? A . n B 1 1 GLY 1 81 ? ? ? B . n B 1 2 HIS 2 82 ? ? ? B . n B 1 3 MET 3 83 ? ? ? B . n B 1 4 SER 4 84 ? ? ? B . n B 1 5 SER 5 85 85 SER SER B . n B 1 6 GLU 6 86 86 GLU GLU B . n B 1 7 PHE 7 87 87 PHE PHE B . n B 1 8 GLN 8 88 88 GLN GLN B . n B 1 9 ILE 9 89 89 ILE ILE B . n B 1 10 ASN 10 90 90 ASN ASN B . n B 1 11 GLU 11 91 91 GLU GLU B . n B 1 12 GLN 12 92 92 GLN GLN B . n B 1 13 VAL 13 93 93 VAL VAL B . n B 1 14 LEU 14 94 94 LEU LEU B . n B 1 15 ALA 15 95 95 ALA ALA B . n B 1 16 CYS 16 96 96 CYS CYS B . n B 1 17 TRP 17 97 97 TRP TRP B . n B 1 18 SER 18 98 98 SER SER B . n B 1 19 ASP 19 99 99 ASP ASP B . n B 1 20 CYS 20 100 100 CYS CYS B . n B 1 21 ARG 21 101 101 ARG ARG B . n B 1 22 PHE 22 102 102 PHE PHE B . n B 1 23 TYR 23 103 103 TYR TYR B . n B 1 24 PRO 24 104 104 PRO PRO B . n B 1 25 ALA 25 105 105 ALA ALA B . n B 1 26 LYS 26 106 106 LYS LYS B . n B 1 27 VAL 27 107 107 VAL VAL B . n B 1 28 THR 28 108 108 THR THR B . n B 1 29 ALA 29 109 109 ALA ALA B . n B 1 30 VAL 30 110 110 VAL VAL B . n B 1 31 ASN 31 111 111 ASN ASN B . n B 1 32 LYS 32 112 112 LYS LYS B . n B 1 33 ASP 33 113 113 ASP ASP B . n B 1 34 GLY 34 114 114 GLY GLY B . n B 1 35 THR 35 115 115 THR THR B . n B 1 36 TYR 36 116 116 TYR TYR B . n B 1 37 THR 37 117 117 THR THR B . n B 1 38 VAL 38 118 118 VAL VAL B . n B 1 39 LYS 39 119 119 LYS LYS B . n B 1 40 PHE 40 120 120 PHE PHE B . n B 1 41 TYR 41 121 121 TYR TYR B . n B 1 42 ASP 42 122 122 ASP ASP B . n B 1 43 GLY 43 123 123 GLY GLY B . n B 1 44 VAL 44 124 124 VAL VAL B . n B 1 45 VAL 45 125 125 VAL VAL B . n B 1 46 GLN 46 126 126 GLN GLN B . n B 1 47 THR 47 127 127 THR THR B . n B 1 48 VAL 48 128 128 VAL VAL B . n B 1 49 LYS 49 129 129 LYS LYS B . n B 1 50 HIS 50 130 130 HIS HIS B . n B 1 51 ILE 51 131 131 ILE ILE B . n B 1 52 HIS 52 132 132 HIS HIS B . n B 1 53 VAL 53 133 133 VAL VAL B . n B 1 54 LYS 54 134 134 LYS LYS B . n B 1 55 ALA 55 135 135 ALA ALA B . n B 1 56 PHE 56 136 136 PHE PHE B . n B 1 57 SER 57 137 137 SER SER B . n B 1 58 LYS 58 138 ? ? ? B . n B 1 59 ASP 59 139 ? ? ? B . n B 1 60 GLN 60 140 ? ? ? B . n B 1 61 ASN 61 141 ? ? ? B . n B 1 62 ILE 62 142 ? ? ? B . n B 1 63 VAL 63 143 ? ? ? B . n B 1 64 GLY 64 144 ? ? ? B . n B 1 65 ASN 65 145 ? ? ? B . n B 1 66 ALA 66 146 ? ? ? B . n B 1 67 ARG 67 147 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 3 3 HOH HOH A . C 2 HOH 2 9 9 HOH HOH A . C 2 HOH 3 10 10 HOH HOH A . C 2 HOH 4 11 11 HOH HOH A . C 2 HOH 5 13 13 HOH HOH A . C 2 HOH 6 15 15 HOH HOH A . C 2 HOH 7 16 16 HOH HOH A . C 2 HOH 8 17 17 HOH HOH A . C 2 HOH 9 20 20 HOH HOH A . C 2 HOH 10 21 21 HOH HOH A . C 2 HOH 11 23 23 HOH HOH A . C 2 HOH 12 25 25 HOH HOH A . C 2 HOH 13 30 30 HOH HOH A . C 2 HOH 14 33 33 HOH HOH A . C 2 HOH 15 34 34 HOH HOH A . C 2 HOH 16 36 36 HOH HOH A . C 2 HOH 17 38 38 HOH HOH A . C 2 HOH 18 40 40 HOH HOH A . C 2 HOH 19 41 41 HOH HOH A . C 2 HOH 20 42 42 HOH HOH A . C 2 HOH 21 43 43 HOH HOH A . C 2 HOH 22 45 45 HOH HOH A . C 2 HOH 23 49 49 HOH HOH A . C 2 HOH 24 51 51 HOH HOH A . C 2 HOH 25 52 52 HOH HOH A . C 2 HOH 26 55 55 HOH HOH A . C 2 HOH 27 56 56 HOH HOH A . C 2 HOH 28 57 57 HOH HOH A . C 2 HOH 29 59 59 HOH HOH A . C 2 HOH 30 61 61 HOH HOH A . C 2 HOH 31 65 65 HOH HOH A . C 2 HOH 32 70 70 HOH HOH A . C 2 HOH 33 72 72 HOH HOH A . C 2 HOH 34 73 73 HOH HOH A . C 2 HOH 35 74 74 HOH HOH A . C 2 HOH 36 76 76 HOH HOH A . C 2 HOH 37 78 78 HOH HOH A . C 2 HOH 38 148 148 HOH HOH A . C 2 HOH 39 149 149 HOH HOH A . C 2 HOH 40 150 87 HOH HOH A . C 2 HOH 41 151 89 HOH HOH A . C 2 HOH 42 152 90 HOH HOH A . C 2 HOH 43 153 92 HOH HOH A . C 2 HOH 44 154 93 HOH HOH A . C 2 HOH 45 155 94 HOH HOH A . C 2 HOH 46 156 95 HOH HOH A . C 2 HOH 47 157 96 HOH HOH A . C 2 HOH 48 158 99 HOH HOH A . C 2 HOH 49 159 101 HOH HOH A . C 2 HOH 50 160 103 HOH HOH A . C 2 HOH 51 161 104 HOH HOH A . C 2 HOH 52 162 107 HOH HOH A . C 2 HOH 53 163 108 HOH HOH A . C 2 HOH 54 164 114 HOH HOH A . C 2 HOH 55 165 116 HOH HOH A . C 2 HOH 56 166 118 HOH HOH A . C 2 HOH 57 167 119 HOH HOH A . C 2 HOH 58 168 120 HOH HOH A . C 2 HOH 59 169 121 HOH HOH A . C 2 HOH 60 170 125 HOH HOH A . C 2 HOH 61 171 126 HOH HOH A . C 2 HOH 62 172 127 HOH HOH A . C 2 HOH 63 173 135 HOH HOH A . C 2 HOH 64 174 136 HOH HOH A . C 2 HOH 65 175 137 HOH HOH A . C 2 HOH 66 176 138 HOH HOH A . C 2 HOH 67 177 139 HOH HOH A . C 2 HOH 68 178 140 HOH HOH A . C 2 HOH 69 179 141 HOH HOH A . C 2 HOH 70 180 147 HOH HOH A . D 2 HOH 1 1 1 HOH HOH B . D 2 HOH 2 2 2 HOH HOH B . D 2 HOH 3 4 4 HOH HOH B . D 2 HOH 4 5 5 HOH HOH B . D 2 HOH 5 6 6 HOH HOH B . D 2 HOH 6 7 7 HOH HOH B . D 2 HOH 7 8 8 HOH HOH B . D 2 HOH 8 12 12 HOH HOH B . D 2 HOH 9 14 14 HOH HOH B . D 2 HOH 10 18 18 HOH HOH B . D 2 HOH 11 19 19 HOH HOH B . D 2 HOH 12 22 22 HOH HOH B . D 2 HOH 13 24 24 HOH HOH B . D 2 HOH 14 26 26 HOH HOH B . D 2 HOH 15 27 27 HOH HOH B . D 2 HOH 16 28 28 HOH HOH B . D 2 HOH 17 29 29 HOH HOH B . D 2 HOH 18 31 31 HOH HOH B . D 2 HOH 19 32 32 HOH HOH B . D 2 HOH 20 35 35 HOH HOH B . D 2 HOH 21 37 37 HOH HOH B . D 2 HOH 22 39 39 HOH HOH B . D 2 HOH 23 44 44 HOH HOH B . D 2 HOH 24 46 46 HOH HOH B . D 2 HOH 25 47 47 HOH HOH B . D 2 HOH 26 48 48 HOH HOH B . D 2 HOH 27 50 50 HOH HOH B . D 2 HOH 28 53 53 HOH HOH B . D 2 HOH 29 54 54 HOH HOH B . D 2 HOH 30 58 58 HOH HOH B . D 2 HOH 31 60 60 HOH HOH B . D 2 HOH 32 62 62 HOH HOH B . D 2 HOH 33 63 63 HOH HOH B . D 2 HOH 34 64 64 HOH HOH B . D 2 HOH 35 66 66 HOH HOH B . D 2 HOH 36 67 67 HOH HOH B . D 2 HOH 37 69 69 HOH HOH B . D 2 HOH 38 71 71 HOH HOH B . D 2 HOH 39 75 75 HOH HOH B . D 2 HOH 40 79 79 HOH HOH B . D 2 HOH 41 80 80 HOH HOH B . D 2 HOH 42 148 81 HOH HOH B . D 2 HOH 43 149 82 HOH HOH B . D 2 HOH 44 150 83 HOH HOH B . D 2 HOH 45 151 84 HOH HOH B . D 2 HOH 46 152 85 HOH HOH B . D 2 HOH 47 153 86 HOH HOH B . D 2 HOH 48 154 88 HOH HOH B . D 2 HOH 49 155 91 HOH HOH B . D 2 HOH 50 156 97 HOH HOH B . D 2 HOH 51 157 98 HOH HOH B . D 2 HOH 52 158 100 HOH HOH B . D 2 HOH 53 159 102 HOH HOH B . D 2 HOH 54 160 105 HOH HOH B . D 2 HOH 55 161 106 HOH HOH B . D 2 HOH 56 162 109 HOH HOH B . D 2 HOH 57 163 110 HOH HOH B . D 2 HOH 58 164 111 HOH HOH B . D 2 HOH 59 165 112 HOH HOH B . D 2 HOH 60 166 113 HOH HOH B . D 2 HOH 61 167 115 HOH HOH B . D 2 HOH 62 168 117 HOH HOH B . D 2 HOH 63 169 122 HOH HOH B . D 2 HOH 64 170 123 HOH HOH B . D 2 HOH 65 171 124 HOH HOH B . D 2 HOH 66 172 128 HOH HOH B . D 2 HOH 67 173 129 HOH HOH B . D 2 HOH 68 174 130 HOH HOH B . D 2 HOH 69 175 131 HOH HOH B . D 2 HOH 70 176 132 HOH HOH B . D 2 HOH 71 177 133 HOH HOH B . D 2 HOH 72 178 134 HOH HOH B . D 2 HOH 73 179 142 HOH HOH B . D 2 HOH 74 180 143 HOH HOH B . D 2 HOH 75 181 144 HOH HOH B . D 2 HOH 76 182 145 HOH HOH B . D 2 HOH 77 183 146 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3P8D _cell.length_a 48.548 _cell.length_b 48.548 _cell.length_c 96.149 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3P8D _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3P8D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.73 _exptl_crystal.density_percent_sol 67.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '12% PEG8000, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2007-02-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.992349 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.992349 # _reflns.entry_id 3P8D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 23.54 _reflns.d_resolution_high 2.00 _reflns.number_obs 14859 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_netI_over_sigmaI 31.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.315 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3P8D _refine.ls_number_reflns_obs 14859 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.54 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 98.63 _refine.ls_R_factor_obs 0.2301 _refine.ls_R_factor_R_work 0.2284 _refine.ls_R_factor_R_free 0.2622 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 753 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -2.5201 _refine.aniso_B[2][2] -2.5201 _refine.aniso_B[3][3] 5.0403 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.371 _refine.solvent_model_param_bsol 78.366 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.ls_R_factor_all ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 856 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 1003 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 23.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 912 'X-RAY DIFFRACTION' ? f_angle_d 0.654 ? ? 1234 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.573 ? ? 316 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 138 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 154 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.0 2.1542 2742 0.3146 97.00 0.3559 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.1542 2.3708 2851 0.2794 100.00 0.3706 . . 154 . . . . 'X-RAY DIFFRACTION' . 2.3708 2.7135 2805 0.2959 99.00 0.3593 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.7135 3.4170 2838 0.2019 99.00 0.2352 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.4170 23.54 2870 0.1847 99.00 0.2090 . . 135 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3P8D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3P8D _struct.title 'Crystal structure of the second Tudor domain of human PHF20 (homodimer form)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P8D _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'Tudor domain, LYSINE-METHYLATED P53 BINDING, HISTONE BINDING, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7Z5E2_HUMAN _struct_ref.pdbx_db_accession Q7Z5E2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKDQNIVGNAR _struct_ref.pdbx_align_begin 84 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3P8D A 4 ? 67 ? Q7Z5E2 84 ? 147 ? 84 147 2 1 3P8D B 4 ? 67 ? Q7Z5E2 84 ? 147 ? 84 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3P8D GLY A 1 ? UNP Q7Z5E2 ? ? 'expression tag' 81 1 1 3P8D HIS A 2 ? UNP Q7Z5E2 ? ? 'expression tag' 82 2 1 3P8D MET A 3 ? UNP Q7Z5E2 ? ? 'expression tag' 83 3 2 3P8D GLY B 1 ? UNP Q7Z5E2 ? ? 'expression tag' 81 4 2 3P8D HIS B 2 ? UNP Q7Z5E2 ? ? 'expression tag' 82 5 2 3P8D MET B 3 ? UNP Q7Z5E2 ? ? 'expression tag' 83 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 670 ? 1 MORE -11 ? 1 'SSA (A^2)' 6800 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 16 SG ? ? ? 1_555 B CYS 20 SG ? ? A CYS 96 B CYS 100 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 20 SG ? ? ? 1_555 B CYS 16 SG ? ? A CYS 100 B CYS 96 1_555 ? ? ? ? ? ? ? 2.027 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 16 ? CYS B 20 ? CYS A 96 ? 1_555 CYS B 100 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 20 ? CYS B 16 ? CYS A 100 ? 1_555 CYS B 96 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 45 ? LYS A 49 ? VAL A 125 LYS A 129 A 2 THR A 35 ? PHE A 40 ? THR A 115 PHE A 120 A 3 PHE A 22 ? VAL A 30 ? PHE A 102 VAL A 110 A 4 GLN A 12 ? CYS A 16 ? GLN A 92 CYS A 96 A 5 VAL A 53 ? ALA A 55 ? VAL A 133 ALA A 135 B 1 VAL B 45 ? LYS B 49 ? VAL B 125 LYS B 129 B 2 THR B 35 ? PHE B 40 ? THR B 115 PHE B 120 B 3 PHE B 22 ? VAL B 30 ? PHE B 102 VAL B 110 B 4 GLN B 12 ? CYS B 16 ? GLN B 92 CYS B 96 B 5 VAL B 53 ? LYS B 54 ? VAL B 133 LYS B 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 48 ? O VAL A 128 N TYR A 36 ? N TYR A 116 A 2 3 O THR A 37 ? O THR A 117 N THR A 28 ? N THR A 108 A 3 4 O TYR A 23 ? O TYR A 103 N ALA A 15 ? N ALA A 95 A 4 5 N LEU A 14 ? N LEU A 94 O LYS A 54 ? O LYS A 134 B 1 2 O VAL B 48 ? O VAL B 128 N TYR B 36 ? N TYR B 116 B 2 3 O THR B 37 ? O THR B 117 N THR B 28 ? N THR B 108 B 3 4 O TYR B 23 ? O TYR B 103 N ALA B 15 ? N ALA B 95 B 4 5 N LEU B 14 ? N LEU B 94 O LYS B 54 ? O LYS B 134 # _pdbx_entry_details.entry_id 3P8D _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 86 ? A 54.29 132.96 2 1 ASN A 90 ? ? 74.78 -13.50 3 1 GLU B 86 ? A 52.82 127.35 4 1 ASN B 90 ? ? 71.88 -7.41 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.5338 -2.3582 -17.6074 0.9220 0.7486 0.6020 -0.0131 -0.1531 -0.1606 0.3541 0.2508 0.0445 -0.3349 0.0802 -0.0908 1.9291 0.4283 -1.1914 -0.9243 -0.6527 0.5149 3.2373 -2.4777 0.0126 'X-RAY DIFFRACTION' 2 ? refined 4.2324 -2.8300 -8.4939 0.7497 0.4427 0.6905 -0.1421 0.0035 -0.0491 0.5049 0.5343 0.3185 -0.3822 0.1538 -0.4600 0.2487 -0.4236 -1.5902 -0.1342 -0.2065 0.8685 0.9293 -1.1935 0.0002 'X-RAY DIFFRACTION' 3 ? refined 14.6217 7.1522 -2.3348 0.3625 0.3854 0.4818 -0.0362 0.0415 -0.0264 0.4442 0.4408 0.5065 0.5022 0.4904 0.5737 0.0745 -0.9442 -0.4668 1.0122 -0.0324 0.6650 0.7220 0.4477 0.0004 'X-RAY DIFFRACTION' 4 ? refined 13.5760 0.9939 -2.6138 0.4484 0.4099 0.4634 0.1019 0.0050 0.0504 0.2113 1.0089 0.7609 -0.3628 -0.2642 -0.0660 -0.2917 -1.1667 -0.8129 0.2224 -0.0267 -1.0815 0.9743 0.9872 0.0001 'X-RAY DIFFRACTION' 5 ? refined -0.3874 2.0191 -9.6166 0.5457 0.6926 0.4593 -0.2410 -0.1034 0.1467 0.1674 0.3810 0.2123 -0.0141 -0.2118 0.2228 -0.2158 0.7293 0.4771 0.1134 -0.1016 0.7098 1.2242 -1.3197 0.0006 'X-RAY DIFFRACTION' 6 ? refined 1.6344 7.6490 -17.7239 0.4183 0.5544 0.4414 -0.0386 -0.0555 0.0686 0.3856 -0.0790 0.1882 0.0598 0.3946 0.0191 -0.0131 -0.8765 -0.6566 0.0676 -0.3671 0.3187 0.3818 0.1176 0.0015 'X-RAY DIFFRACTION' 7 ? refined 3.1008 2.9747 -3.4333 0.4400 0.4232 0.4736 -0.0356 -0.0530 0.0344 0.6346 0.4978 0.8162 0.6217 0.1561 0.4802 0.1818 0.0725 -0.6491 0.6259 0.4886 0.4240 0.1652 -0.8435 -0.0034 'X-RAY DIFFRACTION' 8 ? refined 3.8821 7.7661 -2.9272 0.3867 0.4173 0.4977 0.0800 0.0573 0.1106 0.4675 0.5367 0.1984 -0.1500 -0.1003 0.3542 0.3213 0.5460 0.1657 0.2837 -0.3560 -0.1650 -1.2237 0.1381 -0.0018 'X-RAY DIFFRACTION' 9 ? refined 9.2040 5.7745 -16.0777 0.6337 0.6467 0.4525 -0.2069 -0.0430 -0.0655 0.6927 0.1902 0.2449 -0.3460 -0.2056 -0.0074 -0.8018 1.7634 0.6199 -1.6955 0.6652 0.1176 1.8698 -0.8097 0.0006 'X-RAY DIFFRACTION' 10 ? refined 11.0883 -2.1838 -10.6369 0.8259 0.3387 0.5013 0.0434 -0.0044 -0.0912 1.4460 0.4689 0.8439 0.1736 0.5280 0.6527 -0.7873 0.4502 -0.9395 -0.3821 0.9464 -1.0484 2.2226 -0.4344 -0.0000 'X-RAY DIFFRACTION' 11 ? refined 26.7946 22.5329 4.3303 0.7166 1.0352 0.6611 -0.2687 -0.2604 -0.2058 0.8446 0.6596 0.0985 -0.7914 -0.2894 0.1182 0.0740 -1.7249 1.9291 0.2862 0.2206 -2.0912 -1.5239 2.8325 0.0100 'X-RAY DIFFRACTION' 12 ? refined 25.6360 17.1429 -4.0941 0.3674 0.5936 0.5298 -0.0934 -0.0210 0.0164 0.4422 0.8313 1.0891 -0.4721 -0.6019 0.1202 0.4730 -0.5565 0.1041 -0.1255 -0.5803 -0.9149 -0.2437 0.7548 0.0001 'X-RAY DIFFRACTION' 13 ? refined 19.0749 9.0862 -10.0193 0.3710 0.4173 0.5029 0.0251 0.0544 0.0661 0.4916 0.9349 0.4958 0.6255 0.4810 0.6090 -0.1751 0.8834 0.4689 -1.1482 0.0071 -1.2780 0.2403 1.0857 0.0030 'X-RAY DIFFRACTION' 14 ? refined 23.7191 19.9945 -6.9967 0.4338 0.5176 0.4009 -0.1176 0.0173 -0.0142 0.5255 0.5500 0.9281 0.3073 -0.0555 -0.7426 0.1370 0.1007 0.5892 -0.0476 -0.0416 -0.3709 -0.8486 1.3945 -0.0007 'X-RAY DIFFRACTION' 15 ? refined 16.6150 24.5281 5.8488 0.6023 0.4693 0.4848 -0.1586 0.0589 -0.0524 0.0111 0.1190 0.3081 -0.0076 -0.0653 0.1541 -0.2775 0.5067 0.1641 -1.3631 0.8250 0.8466 0.0676 0.1120 -0.0013 'X-RAY DIFFRACTION' 16 ? refined 20.5485 21.0593 -5.3199 0.4678 0.4234 0.3150 -0.0120 0.0682 -0.0849 0.6549 1.1482 0.5980 0.5643 0.3375 0.0749 0.2716 0.0269 0.2274 0.6407 0.0301 0.2693 -0.6911 0.2640 0.0006 'X-RAY DIFFRACTION' 17 ? refined 16.5155 20.3747 -9.2567 0.4335 0.4299 0.4488 0.0978 0.0753 0.0391 0.6529 0.1557 0.3682 0.3401 0.3662 0.0605 -0.2455 0.0559 -0.1765 0.3599 0.2253 -0.3962 -0.5538 -0.5713 -0.0010 'X-RAY DIFFRACTION' 18 ? refined 18.5430 15.2066 3.8289 0.5246 0.7309 0.3887 -0.1477 -0.0243 -0.0095 0.5892 0.7327 0.3117 -0.4590 0.0587 -0.3967 0.7770 -2.8831 0.8602 1.3308 -0.7838 0.3977 -2.0139 1.3281 -0.0008 'X-RAY DIFFRACTION' 19 ? refined 26.7397 13.4994 -1.6413 0.2675 0.9634 0.5408 -0.0170 -0.0719 -0.0516 0.8058 1.8620 1.5575 -0.5267 1.0919 0.0791 -0.2789 0.7132 1.0379 -0.0164 0.3645 -1.1178 -0.2456 2.0001 -0.0013 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 25:29)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 30:35)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 36:40)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 41:44)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 45:50)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 51:56)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 57:61)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain A and resid 62:67)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 68:71)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 72:77)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(chain B and resid 25:30)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(chain B and resid 31:36)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(chain B and resid 37:42)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(chain B and resid 43:48)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(chain B and resid 49:54)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(chain B and resid 55:61)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(chain B and resid 62:67)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(chain B and resid 68:71)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(chain B and resid 72:77)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 81 ? A GLY 1 2 1 Y 1 A HIS 82 ? A HIS 2 3 1 Y 1 A MET 83 ? A MET 3 4 1 Y 1 A SER 84 ? A SER 4 5 1 Y 1 A LYS 138 ? A LYS 58 6 1 Y 1 A ASP 139 ? A ASP 59 7 1 Y 1 A GLN 140 ? A GLN 60 8 1 Y 1 A ASN 141 ? A ASN 61 9 1 Y 1 A ILE 142 ? A ILE 62 10 1 Y 1 A VAL 143 ? A VAL 63 11 1 Y 1 A GLY 144 ? A GLY 64 12 1 Y 1 A ASN 145 ? A ASN 65 13 1 Y 1 A ALA 146 ? A ALA 66 14 1 Y 1 A ARG 147 ? A ARG 67 15 1 Y 1 B GLY 81 ? B GLY 1 16 1 Y 1 B HIS 82 ? B HIS 2 17 1 Y 1 B MET 83 ? B MET 3 18 1 Y 1 B SER 84 ? B SER 4 19 1 Y 1 B LYS 138 ? B LYS 58 20 1 Y 1 B ASP 139 ? B ASP 59 21 1 Y 1 B GLN 140 ? B GLN 60 22 1 Y 1 B ASN 141 ? B ASN 61 23 1 Y 1 B ILE 142 ? B ILE 62 24 1 Y 1 B VAL 143 ? B VAL 63 25 1 Y 1 B GLY 144 ? B GLY 64 26 1 Y 1 B ASN 145 ? B ASN 65 27 1 Y 1 B ALA 146 ? B ALA 66 28 1 Y 1 B ARG 147 ? B ARG 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 3P8D _atom_sites.fract_transf_matrix[1][1] 0.020598 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020598 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_